Wall clock time and date at job start Tue Mar 31 2020 06:33:03 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46899 * 1 3 3 C 1.46899 * 111.00006 * 2 1 4 4 C 1.38859 * 110.99941 * 123.94847 * 2 1 3 5 5 C 1.39585 * 120.56569 * 300.27942 * 4 2 1 6 6 C 1.38201 * 118.42174 * 180.24132 * 5 4 2 7 7 C 1.38832 * 119.47852 * 359.74811 * 6 5 4 8 8 N 1.31345 * 121.12062 * 359.97438 * 7 6 5 9 9 C 1.32886 * 121.71431 * 0.02562 * 8 7 6 10 10 C 1.47720 * 119.80613 * 179.97438 * 9 8 7 11 11 O 1.21569 * 120.00427 * 179.97438 * 10 9 8 12 12 N 1.34779 * 119.99724 * 0.02562 * 10 9 8 13 13 C 1.47066 * 136.05579 * 180.02562 * 12 10 9 14 14 C 1.53504 * 88.04678 * 207.05024 * 13 12 10 15 15 O 1.42902 * 114.20451 * 87.54970 * 14 13 12 16 16 C 1.50703 * 114.20523 * 220.37340 * 14 13 12 17 17 H 1.08004 * 119.99655 * 0.02562 * 16 14 13 18 18 C 1.37874 * 119.99845 * 180.02562 * 16 14 13 19 19 N 1.31519 * 119.99837 * 359.97438 * 18 16 14 20 20 Si 1.86801 * 119.99979 * 180.02562 * 18 16 14 21 21 H 1.48500 * 109.46984 * 59.99712 * 20 18 16 22 22 H 1.48497 * 109.47149 * 179.97438 * 20 18 16 23 23 H 1.48502 * 109.46659 * 299.99467 * 20 18 16 24 24 C 1.47064 * 136.05760 * 359.94049 * 12 10 9 25 25 H 1.08995 * 109.46911 * 296.05026 * 1 2 3 26 26 H 1.09001 * 109.46828 * 56.05048 * 1 2 3 27 27 H 1.08996 * 109.46917 * 176.04344 * 1 2 3 28 28 H 1.09007 * 109.47482 * 183.95046 * 3 2 1 29 29 H 1.09000 * 109.47088 * 303.95079 * 3 2 1 30 30 H 1.08995 * 109.47463 * 63.95095 * 3 2 1 31 31 H 1.07998 * 120.79146 * 359.97438 * 5 4 2 32 32 H 1.07997 * 120.26044 * 179.72645 * 6 5 4 33 33 H 1.07999 * 119.44054 * 180.02562 * 7 6 5 34 34 H 1.09002 * 113.46793 * 321.85996 * 13 12 10 35 35 H 1.08999 * 113.46805 * 92.24363 * 13 12 10 36 36 H 0.96697 * 113.99512 * 180.02562 * 15 14 13 37 37 H 0.97004 * 119.99468 * 180.02562 * 19 18 16 38 38 H 1.08999 * 113.47096 * 267.69948 * 24 12 10 39 39 H 1.09005 * 113.46966 * 38.08340 * 24 12 10 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4690 0.0000 0.0000 3 6 1.9954 1.3714 0.0000 4 6 1.9666 -0.7240 1.0754 5 6 1.6552 -0.3543 2.3849 6 6 2.1786 -1.1031 3.4219 7 6 2.9873 -2.1947 3.1359 8 7 3.2634 -2.5288 1.8961 9 6 2.7850 -1.8414 0.8643 10 6 3.1231 -2.2541 -0.5132 11 8 2.6870 -1.6282 -1.4597 12 7 3.9142 -3.3254 -0.7206 13 6 4.4600 -4.0277 -1.8918 14 6 4.5077 -5.3032 -1.0390 15 8 3.2973 -6.0627 -1.0526 16 6 5.7428 -6.1409 -1.2488 17 1 6.4982 -5.8225 -1.9520 18 6 5.9083 -7.3137 -0.5431 19 7 4.9885 -7.7011 0.3135 20 14 7.4395 -8.3518 -0.8026 21 1 8.6431 -7.5530 -0.4585 22 1 7.3770 -9.5526 0.0688 23 1 7.5156 -8.7746 -2.2241 24 6 4.6128 -4.3054 0.1245 25 1 -0.3633 0.4513 0.9232 26 1 -0.3633 0.5739 -0.8525 27 1 -0.3633 -1.0252 -0.0709 28 1 3.0828 1.3433 -0.0708 29 1 1.5898 1.9163 -0.8525 30 1 1.7044 1.8724 0.9232 31 1 1.0239 0.4992 2.5831 32 1 1.9605 -0.8409 4.4466 33 1 3.3956 -2.7797 3.9468 34 1 3.7609 -4.0891 -2.7259 35 1 5.4445 -3.6697 -2.1928 36 1 3.3306 -6.8652 -0.5141 37 1 5.1052 -8.5261 0.8102 38 1 5.6384 -4.0220 0.3608 39 1 4.0440 -4.6023 1.0058 RHF calculation, no. of doubly occupied orbitals= 54 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001332113883.mol2 39 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 06:33:03 Heat of formation + Delta-G solvation = 25.162419 kcal Electronic energy + Delta-G solvation = -23662.484393 eV Core-core repulsion = 20186.879214 eV Total energy + Delta-G solvation = -3475.605180 eV No. of doubly occupied orbitals = 54 Molecular weight (most abundant/longest-lived isotopes) = 291.137 amu Computer time = 0.46 seconds Orbital eigenvalues (eV) -40.68245 -39.04149 -37.27953 -36.88206 -33.83507 -32.25101 -32.07259 -30.47614 -28.48166 -27.64591 -25.64023 -24.92398 -24.80330 -23.82865 -21.46023 -20.32438 -18.67682 -17.48503 -16.93945 -16.67950 -16.28323 -15.31403 -15.22423 -15.06296 -14.66619 -14.40275 -14.06022 -13.93666 -13.56480 -13.40553 -12.89432 -12.70648 -12.47302 -12.36202 -12.11950 -11.94171 -11.77773 -11.74328 -11.43365 -10.97904 -10.87815 -10.41042 -10.14049 -9.86134 -9.71768 -9.45717 -9.12817 -8.90162 -8.67781 -8.30012 -8.08610 -7.60500 -6.29561 -4.39295 0.78989 1.15194 3.22377 3.24781 3.27616 3.30209 3.60270 3.78648 4.16914 4.26112 4.47473 4.69427 4.78628 4.92625 5.00106 5.09219 5.16850 5.33756 5.38097 5.45299 5.52942 5.73309 5.81041 5.83868 5.93812 6.00051 6.18459 6.33817 6.40057 6.57816 6.77769 6.85109 6.87921 7.08268 7.25326 7.28063 7.73397 7.93112 7.95090 8.61932 8.68651 9.00550 9.31212 9.62318 10.76979 Molecular weight = 291.14amu Principal moments of inertia in cm(-1) A = 0.026215 B = 0.004370 C = 0.004010 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1067.853255 B = 6405.562696 C = 6981.230073 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.034 3.966 2 N -0.484 5.484 3 C 0.036 3.964 4 C 0.090 3.910 5 C -0.120 4.120 6 C -0.151 4.151 7 C 0.094 3.906 8 N -0.436 5.436 9 C 0.116 3.884 10 C 0.581 3.419 11 O -0.521 6.521 12 N -0.618 5.618 13 C 0.108 3.892 14 C 0.235 3.765 15 O -0.572 6.572 16 C -0.532 4.532 17 H 0.071 0.929 18 C 0.072 3.928 19 N -0.898 5.898 20 Si 0.908 3.092 21 H -0.274 1.274 22 H -0.285 1.285 23 H -0.274 1.274 24 C 0.088 3.912 25 H 0.024 0.976 26 H 0.075 0.925 27 H 0.070 0.930 28 H 0.068 0.932 29 H 0.075 0.925 30 H 0.024 0.976 31 H 0.133 0.867 32 H 0.136 0.864 33 H 0.162 0.838 34 H 0.065 0.935 35 H 0.084 0.916 36 H 0.393 0.607 37 H 0.273 0.727 38 H 0.074 0.926 39 H 0.076 0.924 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -5.371 13.210 7.142 15.949 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.113 4.113 2 N -0.204 5.204 3 C -0.111 4.111 4 C -0.008 4.008 5 C -0.148 4.148 6 C -0.171 4.171 7 C -0.066 4.066 8 N -0.147 5.147 9 C -0.023 4.023 10 C 0.368 3.632 11 O -0.397 6.397 12 N -0.351 5.351 13 C -0.014 4.014 14 C 0.193 3.807 15 O -0.385 6.385 16 C -0.570 4.570 17 H 0.089 0.911 18 C -0.130 4.130 19 N -0.538 5.538 20 Si 0.735 3.265 21 H -0.199 1.199 22 H -0.211 1.211 23 H -0.199 1.199 24 C -0.035 4.035 25 H 0.043 0.957 26 H 0.094 0.906 27 H 0.088 0.912 28 H 0.087 0.913 29 H 0.094 0.906 30 H 0.042 0.958 31 H 0.151 0.849 32 H 0.154 0.846 33 H 0.179 0.821 34 H 0.083 0.917 35 H 0.102 0.898 36 H 0.249 0.751 37 H 0.083 0.917 38 H 0.092 0.908 39 H 0.094 0.906 Dipole moment (debyes) X Y Z Total from point charges -5.301 13.108 5.732 15.257 hybrid contribution 0.154 0.189 1.543 1.562 sum -5.147 13.297 7.276 16.008 Atomic orbital electron populations 1.22420 0.85692 1.02869 1.00300 1.59168 1.08032 1.13529 1.39677 1.22393 1.01234 0.87142 1.00284 1.19632 0.96719 0.95066 0.89432 1.22114 0.99650 1.00074 0.92979 1.22209 0.98367 0.96526 1.00035 1.22941 0.94982 0.94652 0.94039 1.67969 1.19775 1.27640 0.99343 1.21523 0.95097 0.91809 0.93850 1.17079 0.80030 0.79360 0.86718 1.90784 1.53975 1.53315 1.41658 1.49562 1.45657 1.26605 1.13281 1.23330 0.97203 0.90284 0.90553 1.19630 0.84598 0.86830 0.89647 1.86034 1.36113 1.42181 1.74176 1.21399 1.04175 1.06757 1.24671 0.91098 1.25059 0.97113 0.97129 0.93695 1.69277 1.34544 1.24066 1.25933 0.86396 0.82428 0.79297 0.78404 1.19927 1.21057 1.19900 1.24111 0.95020 0.86065 0.98267 0.95731 0.90601 0.91161 0.91308 0.90616 0.95782 0.84877 0.84635 0.82087 0.91652 0.89822 0.75106 0.91664 0.90827 0.90575 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.03 0.42 9.34 60.06 0.56 0.98 16 2 N -0.48 -7.35 2.91 -186.52 -0.54 -7.90 16 3 C 0.04 0.43 9.38 60.06 0.56 1.00 16 4 C 0.09 1.41 4.72 -83.48 -0.39 1.02 16 5 C -0.12 -1.44 8.68 -39.09 -0.34 -1.78 16 6 C -0.15 -1.65 10.10 -39.38 -0.40 -2.05 16 7 C 0.09 1.27 11.17 -17.54 -0.20 1.07 16 8 N -0.44 -7.85 8.01 -9.67 -0.08 -7.93 16 9 C 0.12 2.22 6.76 -82.84 -0.56 1.66 16 10 C 0.58 13.07 8.05 -12.39 -0.10 12.97 16 11 O -0.52 -12.44 15.78 5.31 0.08 -12.36 16 12 N -0.62 -14.31 3.69 -186.16 -0.69 -15.00 16 13 C 0.11 2.51 8.03 -8.50 -0.07 2.44 16 14 C 0.23 5.92 1.59 -91.18 -0.14 5.78 16 15 O -0.57 -15.50 13.54 -35.23 -0.48 -15.98 16 16 C -0.53 -13.74 8.69 -34.44 -0.30 -14.04 16 17 H 0.07 1.77 7.81 -52.48 -0.41 1.36 16 18 C 0.07 1.84 5.40 -17.82 -0.10 1.75 16 19 N -0.90 -23.37 11.01 55.43 0.61 -22.76 16 20 Si 0.91 19.79 29.54 -169.99 -5.02 14.76 16 21 H -0.27 -5.90 7.11 56.52 0.40 -5.50 16 22 H -0.29 -6.17 7.11 56.52 0.40 -5.77 16 23 H -0.27 -5.97 7.11 56.52 0.40 -5.57 16 24 C 0.09 2.07 6.91 -8.43 -0.06 2.01 16 25 H 0.02 0.24 7.16 -51.93 -0.37 -0.13 16 26 H 0.08 0.82 8.12 -51.93 -0.42 0.40 16 27 H 0.07 0.95 8.14 -51.93 -0.42 0.53 16 28 H 0.07 0.90 8.14 -51.92 -0.42 0.47 16 29 H 0.08 0.80 8.12 -51.93 -0.42 0.38 16 30 H 0.02 0.23 7.41 -51.93 -0.38 -0.15 16 31 H 0.13 1.23 7.16 -52.49 -0.38 0.86 16 32 H 0.14 0.99 8.06 -52.49 -0.42 0.57 16 33 H 0.16 1.70 8.06 -52.49 -0.42 1.28 16 34 H 0.06 1.53 8.14 -51.93 -0.42 1.11 16 35 H 0.08 1.77 8.10 -51.93 -0.42 1.35 16 36 H 0.39 10.70 6.33 45.56 0.29 10.98 16 37 H 0.27 6.75 8.31 -40.82 -0.34 6.41 16 38 H 0.07 1.67 8.10 -51.93 -0.42 1.25 16 39 H 0.08 1.84 7.15 -51.93 -0.37 1.47 16 LS Contribution 328.94 15.07 4.96 4.96 Total: -1.00 -30.87 328.94 -7.24 -38.11 By element: Atomic # 1 Polarization: 15.84 SS G_CDS: -4.56 Total: 11.29 kcal Atomic # 6 Polarization: 14.33 SS G_CDS: -1.53 Total: 12.80 kcal Atomic # 7 Polarization: -52.88 SS G_CDS: -0.70 Total: -53.58 kcal Atomic # 8 Polarization: -27.94 SS G_CDS: -0.39 Total: -28.34 kcal Atomic # 14 Polarization: 19.79 SS G_CDS: -5.02 Total: 14.76 kcal Total LS contribution 4.96 Total: 4.96 kcal Total: -30.87 -7.24 -38.11 kcal The number of atoms in the molecule is 39 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001332113883.mol2 39 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 63.271 kcal (2) G-P(sol) polarization free energy of solvation -30.866 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 32.405 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.242 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -38.108 kcal (6) G-S(sol) free energy of system = (1) + (5) 25.162 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.47 seconds