Wall clock time and date at job start Tue Mar 31 2020 06:33:02 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46899 * 1 3 3 C 1.46899 * 111.00006 * 2 1 4 4 C 1.38859 * 110.99941 * 123.94847 * 2 1 3 5 5 C 1.39585 * 120.56569 * 300.27942 * 4 2 1 6 6 C 1.38201 * 118.42174 * 180.24132 * 5 4 2 7 7 C 1.38832 * 119.47852 * 359.74811 * 6 5 4 8 8 N 1.31345 * 121.12062 * 359.97438 * 7 6 5 9 9 C 1.32886 * 121.71431 * 0.02562 * 8 7 6 10 10 C 1.47720 * 119.80613 * 179.97438 * 9 8 7 11 11 O 1.21569 * 120.00427 * 179.97438 * 10 9 8 12 12 N 1.34779 * 119.99724 * 0.02562 * 10 9 8 13 13 C 1.47066 * 136.05579 * 180.02562 * 12 10 9 14 14 C 1.53504 * 88.04678 * 207.05024 * 13 12 10 15 15 O 1.42902 * 114.20451 * 87.54970 * 14 13 12 16 16 C 1.50703 * 114.20523 * 220.37340 * 14 13 12 17 17 H 1.08004 * 119.99655 * 0.02562 * 16 14 13 18 18 C 1.37874 * 119.99845 * 180.02562 * 16 14 13 19 19 N 1.31519 * 119.99837 * 359.97438 * 18 16 14 20 20 Si 1.86801 * 119.99979 * 180.02562 * 18 16 14 21 21 H 1.48500 * 109.46984 * 59.99712 * 20 18 16 22 22 H 1.48497 * 109.47149 * 179.97438 * 20 18 16 23 23 H 1.48502 * 109.46659 * 299.99467 * 20 18 16 24 24 C 1.47064 * 136.05760 * 359.94049 * 12 10 9 25 25 H 1.08995 * 109.46911 * 296.05026 * 1 2 3 26 26 H 1.09001 * 109.46828 * 56.05048 * 1 2 3 27 27 H 1.08996 * 109.46917 * 176.04344 * 1 2 3 28 28 H 1.09007 * 109.47482 * 183.95046 * 3 2 1 29 29 H 1.09000 * 109.47088 * 303.95079 * 3 2 1 30 30 H 1.08995 * 109.47463 * 63.95095 * 3 2 1 31 31 H 1.07998 * 120.79146 * 359.97438 * 5 4 2 32 32 H 1.07997 * 120.26044 * 179.72645 * 6 5 4 33 33 H 1.07999 * 119.44054 * 180.02562 * 7 6 5 34 34 H 1.09002 * 113.46793 * 321.85996 * 13 12 10 35 35 H 1.08999 * 113.46805 * 92.24363 * 13 12 10 36 36 H 0.96697 * 113.99512 * 180.02562 * 15 14 13 37 37 H 0.97004 * 119.99468 * 180.02562 * 19 18 16 38 38 H 1.08999 * 113.47096 * 267.69948 * 24 12 10 39 39 H 1.09005 * 113.46966 * 38.08340 * 24 12 10 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4690 0.0000 0.0000 3 6 1.9954 1.3714 0.0000 4 6 1.9666 -0.7240 1.0754 5 6 1.6552 -0.3543 2.3849 6 6 2.1786 -1.1031 3.4219 7 6 2.9873 -2.1947 3.1359 8 7 3.2634 -2.5288 1.8961 9 6 2.7850 -1.8414 0.8643 10 6 3.1231 -2.2541 -0.5132 11 8 2.6870 -1.6282 -1.4597 12 7 3.9142 -3.3254 -0.7206 13 6 4.4600 -4.0277 -1.8918 14 6 4.5077 -5.3032 -1.0390 15 8 3.2973 -6.0627 -1.0526 16 6 5.7428 -6.1409 -1.2488 17 1 6.4982 -5.8225 -1.9520 18 6 5.9083 -7.3137 -0.5431 19 7 4.9885 -7.7011 0.3135 20 14 7.4395 -8.3518 -0.8026 21 1 8.6431 -7.5530 -0.4585 22 1 7.3770 -9.5526 0.0688 23 1 7.5156 -8.7746 -2.2241 24 6 4.6128 -4.3054 0.1245 25 1 -0.3633 0.4513 0.9232 26 1 -0.3633 0.5739 -0.8525 27 1 -0.3633 -1.0252 -0.0709 28 1 3.0828 1.3433 -0.0708 29 1 1.5898 1.9163 -0.8525 30 1 1.7044 1.8724 0.9232 31 1 1.0239 0.4992 2.5831 32 1 1.9605 -0.8409 4.4466 33 1 3.3956 -2.7797 3.9468 34 1 3.7609 -4.0891 -2.7259 35 1 5.4445 -3.6697 -2.1928 36 1 3.3306 -6.8652 -0.5141 37 1 5.1052 -8.5261 0.8102 38 1 5.6384 -4.0220 0.3608 39 1 4.0440 -4.6023 1.0058 RHF calculation, no. of doubly occupied orbitals= 54 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001332113883.mol2 39 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 06:33:02 Heat of formation + Delta-G solvation = 2.530709 kcal Electronic energy + Delta-G solvation = -23663.465778 eV Core-core repulsion = 20186.879214 eV Total energy + Delta-G solvation = -3476.586564 eV No. of doubly occupied orbitals = 54 Molecular weight (most abundant/longest-lived isotopes) = 291.137 amu Computer time = 0.53 seconds Orbital eigenvalues (eV) -41.90931 -40.75609 -38.74404 -38.23870 -35.81556 -34.10040 -33.34597 -31.63549 -30.24335 -28.56790 -27.41462 -26.72691 -25.92337 -25.16524 -22.52996 -22.01166 -20.35038 -19.39352 -18.24736 -18.07519 -17.46282 -17.09489 -16.70531 -16.58677 -15.98028 -15.86231 -15.79857 -14.98258 -14.91795 -14.63621 -14.54467 -14.20254 -13.86727 -13.67786 -13.52825 -13.37028 -13.26562 -12.95684 -12.73483 -12.72525 -12.71334 -12.20145 -12.13059 -11.43259 -10.97554 -10.88876 -10.74421 -10.60529 -10.11819 -10.02559 -9.45418 -9.22633 -8.23653 -6.41335 -0.36552 0.14628 1.50183 1.51323 1.59579 1.84913 1.99629 2.43168 2.76652 2.84666 2.97227 3.21414 3.66977 3.80612 3.82970 3.98200 4.09739 4.21875 4.30634 4.38185 4.43933 4.52334 4.54515 4.54959 4.66226 4.85436 4.89461 4.90715 4.92819 4.99776 5.10965 5.17172 5.29433 5.46083 5.75316 5.94171 5.95883 6.24247 6.63705 6.80758 6.91493 7.28575 7.34581 7.51185 8.82708 Molecular weight = 291.14amu Principal moments of inertia in cm(-1) A = 0.026215 B = 0.004370 C = 0.004010 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1067.853255 B = 6405.562696 C = 6981.230073 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.037 3.963 2 N -0.522 5.522 3 C 0.039 3.961 4 C 0.092 3.908 5 C -0.115 4.115 6 C -0.118 4.118 7 C 0.081 3.919 8 N -0.473 5.473 9 C 0.066 3.934 10 C 0.573 3.427 11 O -0.548 6.548 12 N -0.627 5.627 13 C 0.109 3.891 14 C 0.217 3.783 15 O -0.587 6.587 16 C -0.554 4.554 17 H 0.075 0.925 18 C 0.031 3.969 19 N -0.918 5.918 20 Si 0.974 3.026 21 H -0.267 1.267 22 H -0.281 1.281 23 H -0.273 1.273 24 C 0.110 3.890 25 H 0.055 0.945 26 H 0.086 0.914 27 H 0.046 0.954 28 H 0.048 0.952 29 H 0.085 0.915 30 H 0.054 0.946 31 H 0.172 0.828 32 H 0.187 0.813 33 H 0.188 0.812 34 H 0.054 0.946 35 H 0.101 0.899 36 H 0.388 0.612 37 H 0.276 0.724 38 H 0.076 0.924 39 H 0.063 0.937 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -5.555 14.715 9.500 18.375 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.109 4.109 2 N -0.244 5.244 3 C -0.106 4.106 4 C -0.007 4.007 5 C -0.142 4.142 6 C -0.138 4.138 7 C -0.080 4.080 8 N -0.185 5.185 9 C -0.071 4.071 10 C 0.362 3.638 11 O -0.426 6.426 12 N -0.360 5.360 13 C -0.014 4.014 14 C 0.175 3.825 15 O -0.400 6.400 16 C -0.592 4.592 17 H 0.093 0.907 18 C -0.169 4.169 19 N -0.559 5.559 20 Si 0.798 3.202 21 H -0.192 1.192 22 H -0.206 1.206 23 H -0.198 1.198 24 C -0.013 4.013 25 H 0.074 0.926 26 H 0.105 0.895 27 H 0.065 0.935 28 H 0.067 0.933 29 H 0.104 0.896 30 H 0.072 0.928 31 H 0.189 0.811 32 H 0.204 0.796 33 H 0.204 0.796 34 H 0.072 0.928 35 H 0.119 0.881 36 H 0.244 0.756 37 H 0.086 0.914 38 H 0.094 0.906 39 H 0.082 0.918 Dipole moment (debyes) X Y Z Total from point charges -5.495 14.639 8.082 17.601 hybrid contribution 0.128 -0.211 0.893 0.927 sum -5.366 14.427 8.975 17.818 Atomic orbital electron populations 1.22413 0.84212 1.01900 1.02393 1.59031 1.09579 1.15127 1.40657 1.22389 0.99976 0.85980 1.02287 1.19755 0.95645 0.93908 0.91346 1.22484 0.99523 1.01017 0.91198 1.22720 0.94985 0.93955 1.02177 1.23522 0.95522 0.96006 0.92952 1.67778 1.21092 1.28802 1.00806 1.21107 0.99038 0.94686 0.92222 1.17827 0.78890 0.78501 0.88561 1.90731 1.54708 1.53988 1.43157 1.49637 1.46392 1.27314 1.12678 1.23317 0.97889 0.89842 0.90303 1.19903 0.83989 0.87334 0.91247 1.86017 1.37480 1.42248 1.74266 1.21633 1.04520 1.07666 1.25371 0.90704 1.25812 0.99899 0.97976 0.93192 1.69350 1.35885 1.24411 1.26253 0.85369 0.78982 0.77663 0.78172 1.19181 1.20612 1.19803 1.23769 0.94881 0.85611 0.97085 0.92620 0.89539 0.93532 0.93279 0.89603 0.92776 0.81082 0.79594 0.79559 0.92788 0.88071 0.75617 0.91364 0.90556 0.91805 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.04 0.85 9.34 127.69 1.19 2.04 16 2 N -0.52 -15.43 2.91 -744.02 -2.17 -17.59 16 3 C 0.04 0.88 9.38 127.69 1.20 2.08 16 4 C 0.09 2.78 4.72 38.81 0.18 2.97 16 5 C -0.11 -2.29 8.68 22.59 0.20 -2.10 16 6 C -0.12 -2.05 10.10 22.40 0.23 -1.82 16 7 C 0.08 2.00 11.17 84.91 0.95 2.95 16 8 N -0.47 -17.06 8.01 -184.51 -1.48 -18.54 16 9 C 0.07 2.58 6.76 41.95 0.28 2.87 16 10 C 0.57 26.91 8.05 86.75 0.70 27.61 16 11 O -0.55 -27.36 15.78 -3.93 -0.06 -27.43 16 12 N -0.63 -30.30 3.69 -861.58 -3.18 -33.48 16 13 C 0.11 5.25 8.03 83.18 0.67 5.92 16 14 C 0.22 11.30 1.59 -11.16 -0.02 11.28 16 15 O -0.59 -33.17 13.54 -148.98 -2.02 -35.19 16 16 C -0.55 -29.07 8.69 25.60 0.22 -28.85 16 17 H 0.07 3.76 7.81 -2.91 -0.02 3.74 16 18 C 0.03 1.60 5.40 84.65 0.46 2.06 16 19 N -0.92 -48.35 11.01 21.45 0.24 -48.12 16 20 Si 0.97 40.40 29.54 68.60 2.03 42.42 16 21 H -0.27 -10.72 7.11 99.48 0.71 -10.01 16 22 H -0.28 -11.38 7.11 99.48 0.71 -10.67 16 23 H -0.27 -11.22 7.11 99.48 0.71 -10.51 16 24 C 0.11 5.32 6.91 83.23 0.58 5.90 16 25 H 0.06 0.90 7.16 -2.39 -0.02 0.89 16 26 H 0.09 1.74 8.12 -2.39 -0.02 1.72 16 27 H 0.05 1.26 8.14 -2.39 -0.02 1.24 16 28 H 0.05 1.26 8.14 -2.38 -0.02 1.24 16 29 H 0.09 1.68 8.12 -2.39 -0.02 1.67 16 30 H 0.05 0.86 7.41 -2.39 -0.02 0.84 16 31 H 0.17 2.13 7.16 -2.91 -0.02 2.11 16 32 H 0.19 1.40 8.06 -2.91 -0.02 1.38 16 33 H 0.19 3.42 8.06 -2.91 -0.02 3.40 16 34 H 0.05 2.66 8.14 -2.39 -0.02 2.64 16 35 H 0.10 4.41 8.10 -2.39 -0.02 4.39 16 36 H 0.39 22.02 6.33 -74.06 -0.47 21.55 16 37 H 0.28 13.70 8.31 -92.71 -0.77 12.93 16 38 H 0.08 3.58 8.10 -2.39 -0.02 3.56 16 39 H 0.06 3.22 7.15 -2.38 -0.02 3.20 16 Total: -1.00 -70.53 328.94 0.79 -69.74 By element: Atomic # 1 Polarization: 34.69 SS G_CDS: 0.60 Total: 35.29 kcal Atomic # 6 Polarization: 26.06 SS G_CDS: 6.83 Total: 32.89 kcal Atomic # 7 Polarization: -111.14 SS G_CDS: -6.59 Total: -117.73 kcal Atomic # 8 Polarization: -60.53 SS G_CDS: -2.08 Total: -62.61 kcal Atomic # 14 Polarization: 40.40 SS G_CDS: 2.03 Total: 42.42 kcal Total: -70.53 0.79 -69.74 kcal The number of atoms in the molecule is 39 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001332113883.mol2 39 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 72.268 kcal (2) G-P(sol) polarization free energy of solvation -70.532 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 1.736 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 0.794 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -69.737 kcal (6) G-S(sol) free energy of system = (1) + (5) 2.531 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.53 seconds