Wall clock time and date at job start Tue Mar 31 2020 06:05:57 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52997 * 1 3 3 N 1.46503 * 109.46728 * 2 1 4 4 C 1.46501 * 120.00262 * 274.96944 * 3 2 1 5 5 C 1.50695 * 109.47449 * 264.56595 * 4 3 2 6 6 H 1.08007 * 119.99787 * 359.97438 * 5 4 3 7 7 C 1.37877 * 120.00390 * 179.97438 * 5 4 3 8 8 N 1.31512 * 120.00318 * 179.97438 * 7 5 4 9 9 Si 1.86803 * 119.99693 * 0.02562 * 7 5 4 10 10 H 1.48506 * 109.47120 * 89.99544 * 9 7 5 11 11 H 1.48496 * 109.46992 * 209.99768 * 9 7 5 12 12 H 1.48505 * 109.47211 * 329.99860 * 9 7 5 13 13 C 1.34781 * 120.00093 * 94.97902 * 3 2 1 14 14 O 1.21566 * 119.99451 * 354.41409 * 13 3 2 15 15 C 1.47764 * 120.00330 * 174.70005 * 13 3 2 16 16 C 1.41173 * 126.17261 * 184.58263 * 15 13 3 17 17 C 1.36846 * 104.89636 * 179.97438 * 16 15 13 18 18 N 1.37819 * 107.44844 * 0.02562 * 17 16 15 19 19 N 1.28075 * 109.00677 * 359.69885 * 18 17 16 20 20 C 1.46771 * 123.00078 * 179.97438 * 18 17 16 21 21 C 1.52974 * 109.78518 * 338.48425 * 20 18 17 22 22 C 1.53284 * 110.60097 * 53.54042 * 21 20 18 23 23 C 1.46824 * 130.33504 * 180.02562 * 17 16 15 24 24 O 1.21349 * 122.51885 * 349.50843 * 23 17 16 25 25 H 1.08999 * 109.47418 * 179.97438 * 1 2 3 26 26 H 1.09004 * 109.47614 * 300.00181 * 1 2 3 27 27 H 1.09002 * 109.47138 * 60.00133 * 1 2 3 28 28 H 1.08996 * 109.47473 * 240.00440 * 2 1 3 29 29 H 1.09002 * 109.47138 * 119.99867 * 2 1 3 30 30 H 1.08998 * 109.46746 * 24.56828 * 4 3 2 31 31 H 1.09000 * 109.46873 * 144.56074 * 4 3 2 32 32 H 0.97003 * 119.99945 * 179.97438 * 8 7 5 33 33 H 1.08004 * 127.55025 * 0.03439 * 16 15 13 34 34 H 1.08997 * 109.42069 * 218.38376 * 20 18 17 35 35 H 1.09006 * 109.36285 * 98.54872 * 20 18 17 36 36 H 1.08997 * 109.24559 * 293.24748 * 21 20 18 37 37 H 1.08999 * 109.21598 * 173.80714 * 21 20 18 38 38 H 1.09001 * 109.77612 * 176.57074 * 22 21 20 39 39 H 1.09000 * 109.78353 * 55.76442 * 22 21 20 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 7 2.0182 1.3813 0.0000 4 6 2.1587 2.1086 -1.2639 5 6 3.5797 1.9963 -1.7529 6 1 4.3058 1.4392 -1.1792 7 6 3.9531 2.6047 -2.9325 8 7 5.1933 2.5072 -3.3589 9 14 2.6975 3.5688 -3.9243 10 1 2.6998 4.9863 -3.4816 11 1 3.0469 3.4998 -5.3659 12 1 1.3476 2.9867 -3.7136 13 6 2.3383 1.9829 1.1628 14 8 2.1269 1.4175 2.2180 15 6 2.9404 3.3323 1.1553 16 6 3.4073 4.0426 2.2825 17 6 3.8720 5.2289 1.7830 18 7 3.6806 5.2060 0.4183 19 7 3.1446 4.0898 0.0910 20 6 4.0610 6.3179 -0.4610 21 6 4.1638 7.6094 0.3523 22 6 5.1001 7.4189 1.5509 23 6 4.4770 6.3772 2.4694 24 8 4.4809 6.4869 3.6779 25 1 -0.3634 -1.0276 -0.0005 26 1 -0.3634 0.5139 0.8900 27 1 -0.3633 0.5138 -0.8900 28 1 1.8934 -0.5137 -0.8900 29 1 1.8933 -0.5138 0.8900 30 1 1.4843 1.6812 -2.0059 31 1 1.9097 3.1583 -1.1086 32 1 5.4558 2.9349 -4.1890 33 1 3.4003 3.7200 3.3132 34 1 3.3074 6.4386 -1.2392 35 1 5.0253 6.1014 -0.9209 36 1 3.1729 7.8880 0.7109 37 1 4.5522 8.4043 -0.2844 38 1 5.2114 8.3623 2.0855 39 1 6.0744 7.0722 1.2065 RHF calculation, no. of doubly occupied orbitals= 54 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001339358201.mol2 39 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 06:05:57 Heat of formation + Delta-G solvation = 17.887514 kcal Electronic energy + Delta-G solvation = -24024.563134 eV Core-core repulsion = 20548.642491 eV Total energy + Delta-G solvation = -3475.920643 eV No. of doubly occupied orbitals = 54 Molecular weight (most abundant/longest-lived isotopes) = 291.137 amu Computer time = 0.44 seconds Orbital eigenvalues (eV) -42.33182 -39.18975 -38.67398 -35.84111 -35.30348 -32.64822 -31.68847 -31.04532 -29.66314 -28.09947 -27.54028 -24.39697 -22.79267 -22.62458 -22.44429 -21.21780 -19.36147 -18.07671 -17.01582 -16.94757 -16.58442 -15.85329 -15.60417 -15.23569 -14.78857 -14.56184 -14.48802 -14.11808 -13.90113 -13.50771 -13.15546 -12.99336 -12.77646 -12.50833 -12.34796 -12.13089 -11.82707 -11.67965 -11.58891 -11.43659 -10.92664 -10.76906 -10.47676 -10.23599 -10.15821 -9.71709 -9.52707 -9.36203 -8.91916 -8.75156 -8.58604 -7.71568 -6.12967 -4.08531 1.11566 2.23080 2.56601 2.89034 3.14960 3.25813 3.28357 3.68448 3.95351 4.07433 4.20012 4.32507 4.47427 4.60161 4.83317 5.04908 5.20264 5.24944 5.32553 5.38722 5.42595 5.55214 5.65797 5.71476 5.75200 5.82566 5.86319 5.96778 6.21713 6.35073 6.55445 6.59044 6.64235 6.78126 7.02687 7.36085 7.45146 7.56276 8.13123 8.29684 8.48876 8.89155 8.94779 9.48205 11.00392 Molecular weight = 291.14amu Principal moments of inertia in cm(-1) A = 0.013080 B = 0.007523 C = 0.005238 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2140.164386 B = 3721.151623 C = 5343.802456 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.164 4.164 2 C 0.114 3.886 3 N -0.579 5.579 4 C 0.202 3.798 5 C -0.507 4.507 6 H 0.072 0.928 7 C 0.077 3.923 8 N -0.900 5.900 9 Si 0.870 3.130 10 H -0.276 1.276 11 H -0.288 1.288 12 H -0.266 1.266 13 C 0.604 3.396 14 O -0.563 6.563 15 C -0.031 4.031 16 C -0.089 4.089 17 C -0.109 4.109 18 N -0.265 5.265 19 N -0.154 5.154 20 C 0.118 3.882 21 C -0.128 4.128 22 C -0.167 4.167 23 C 0.434 3.566 24 O -0.447 6.447 25 H 0.059 0.941 26 H 0.055 0.945 27 H 0.054 0.946 28 H 0.079 0.921 29 H 0.077 0.923 30 H 0.030 0.970 31 H 0.053 0.947 32 H 0.262 0.738 33 H 0.167 0.833 34 H 0.107 0.893 35 H 0.103 0.897 36 H 0.080 0.920 37 H 0.105 0.895 38 H 0.102 0.898 39 H 0.109 0.891 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -3.462 9.541 3.849 10.855 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.222 4.222 2 C -0.009 4.009 3 N -0.309 5.309 4 C 0.081 3.919 5 C -0.546 4.546 6 H 0.090 0.910 7 C -0.124 4.124 8 N -0.539 5.539 9 Si 0.698 3.302 10 H -0.202 1.202 11 H -0.214 1.214 12 H -0.191 1.191 13 C 0.391 3.609 14 O -0.442 6.442 15 C -0.187 4.187 16 C -0.117 4.117 17 C -0.229 4.229 18 N -0.061 5.061 19 N 0.006 4.994 20 C -0.002 4.002 21 C -0.166 4.166 22 C -0.205 4.205 23 C 0.310 3.690 24 O -0.319 6.319 25 H 0.078 0.922 26 H 0.074 0.926 27 H 0.073 0.927 28 H 0.097 0.903 29 H 0.095 0.905 30 H 0.048 0.952 31 H 0.071 0.929 32 H 0.072 0.928 33 H 0.184 0.816 34 H 0.125 0.875 35 H 0.121 0.879 36 H 0.098 0.902 37 H 0.124 0.876 38 H 0.121 0.879 39 H 0.127 0.873 Dipole moment (debyes) X Y Z Total from point charges -3.561 9.480 3.652 10.765 hybrid contribution -0.230 0.477 -0.233 0.579 sum -3.791 9.957 3.419 11.189 Atomic orbital electron populations 1.22125 0.96691 1.01427 1.01999 1.21329 0.93521 0.83012 1.02988 1.47830 1.62023 1.13536 1.07505 1.20121 0.98217 0.92993 0.80596 1.21236 0.93843 1.32739 1.06739 0.90956 1.24740 0.94819 0.95825 0.97033 1.69914 1.16805 1.44850 1.22369 0.86956 0.82676 0.81020 0.79543 1.20213 1.21431 1.19092 1.16835 0.77338 0.83023 0.83694 1.90696 1.56720 1.65649 1.31159 1.21923 1.09564 0.97753 0.89448 1.21813 0.98275 0.91573 1.00070 1.22073 1.14376 1.00528 0.85918 1.46593 1.41802 1.12568 1.05116 1.74100 1.08435 0.92009 1.24849 1.22107 1.03954 0.82013 0.92129 1.21865 1.01271 0.96729 0.96784 1.22465 1.00830 1.00228 0.96928 1.21721 0.74985 0.83817 0.88508 1.90582 1.49616 1.76036 1.15649 0.92158 0.92628 0.92696 0.90270 0.90466 0.95249 0.92906 0.92797 0.81592 0.87492 0.87901 0.90161 0.87622 0.87926 0.87309 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.16 -2.52 10.24 37.16 0.38 -2.14 16 2 C 0.11 2.10 6.12 -4.04 -0.02 2.07 16 3 N -0.58 -12.51 2.47 -176.21 -0.44 -12.95 16 4 C 0.20 4.64 3.84 -5.20 -0.02 4.62 16 5 C -0.51 -13.41 8.58 -34.44 -0.30 -13.70 16 6 H 0.07 2.19 8.06 -52.48 -0.42 1.76 16 7 C 0.08 2.06 5.47 -17.82 -0.10 1.96 16 8 N -0.90 -25.76 13.96 55.43 0.77 -24.99 16 9 Si 0.87 19.72 27.47 -169.99 -4.67 15.05 16 10 H -0.28 -5.86 7.11 56.52 0.40 -5.46 16 11 H -0.29 -6.60 7.11 56.52 0.40 -6.20 16 12 H -0.27 -5.84 6.54 56.52 0.37 -5.47 16 13 C 0.60 13.51 7.63 -12.36 -0.09 13.42 16 14 O -0.56 -13.12 16.47 5.31 0.09 -13.03 16 15 C -0.03 -0.66 6.73 -82.69 -0.56 -1.22 16 16 C -0.09 -1.67 10.85 -38.97 -0.42 -2.09 16 17 C -0.11 -1.83 6.73 -82.21 -0.55 -2.38 16 18 N -0.27 -4.55 3.81 -57.17 -0.22 -4.77 16 19 N -0.15 -3.21 7.64 33.43 0.26 -2.96 16 20 C 0.12 1.46 7.16 -3.91 -0.03 1.44 16 21 C -0.13 -1.06 5.85 -26.60 -0.16 -1.22 16 22 C -0.17 -1.54 6.23 -26.98 -0.17 -1.71 16 23 C 0.43 6.11 7.10 -30.08 -0.21 5.90 16 24 O -0.45 -7.37 17.97 5.50 0.10 -7.28 16 25 H 0.06 0.76 8.14 -51.93 -0.42 0.34 16 26 H 0.05 0.89 8.14 -51.93 -0.42 0.47 16 27 H 0.05 0.84 8.14 -51.93 -0.42 0.41 16 28 H 0.08 1.41 8.11 -51.93 -0.42 0.99 16 29 H 0.08 1.41 7.36 -51.93 -0.38 1.03 16 30 H 0.03 0.66 7.09 -51.93 -0.37 0.30 16 31 H 0.05 1.22 5.06 -51.93 -0.26 0.96 16 32 H 0.26 7.04 8.31 -40.82 -0.34 6.71 16 33 H 0.17 2.91 8.06 -52.48 -0.42 2.49 16 34 H 0.11 1.29 8.14 -51.93 -0.42 0.87 16 35 H 0.10 1.26 8.14 -51.93 -0.42 0.84 16 36 H 0.08 0.66 8.14 -51.93 -0.42 0.24 16 37 H 0.11 0.55 8.14 -51.93 -0.42 0.12 16 38 H 0.10 0.76 8.14 -51.93 -0.42 0.33 16 39 H 0.11 0.91 8.14 -51.93 -0.42 0.48 16 LS Contribution 328.40 15.07 4.95 4.95 Total: -1.00 -33.18 328.40 -6.66 -39.84 By element: Atomic # 1 Polarization: 6.46 SS G_CDS: -5.25 Total: 1.20 kcal Atomic # 6 Polarization: 7.18 SS G_CDS: -2.25 Total: 4.93 kcal Atomic # 7 Polarization: -46.04 SS G_CDS: 0.38 Total: -45.67 kcal Atomic # 8 Polarization: -20.50 SS G_CDS: 0.19 Total: -20.31 kcal Atomic # 14 Polarization: 19.72 SS G_CDS: -4.67 Total: 15.05 kcal Total LS contribution 4.95 Total: 4.95 kcal Total: -33.18 -6.66 -39.84 kcal The number of atoms in the molecule is 39 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001339358201.mol2 39 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 57.728 kcal (2) G-P(sol) polarization free energy of solvation -33.181 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 24.547 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -6.660 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -39.840 kcal (6) G-S(sol) free energy of system = (1) + (5) 17.888 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.44 seconds