Wall clock time and date at job start Tue Mar 31 2020 06:05:56 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52997 * 1 3 3 N 1.46503 * 109.46728 * 2 1 4 4 C 1.46501 * 120.00262 * 274.96944 * 3 2 1 5 5 C 1.50695 * 109.47449 * 264.56595 * 4 3 2 6 6 H 1.08007 * 119.99787 * 359.97438 * 5 4 3 7 7 C 1.37877 * 120.00390 * 179.97438 * 5 4 3 8 8 N 1.31512 * 120.00318 * 179.97438 * 7 5 4 9 9 Si 1.86803 * 119.99693 * 0.02562 * 7 5 4 10 10 H 1.48506 * 109.47120 * 89.99544 * 9 7 5 11 11 H 1.48496 * 109.46992 * 209.99768 * 9 7 5 12 12 H 1.48505 * 109.47211 * 329.99860 * 9 7 5 13 13 C 1.34781 * 120.00093 * 94.97902 * 3 2 1 14 14 O 1.21566 * 119.99451 * 354.41409 * 13 3 2 15 15 C 1.47764 * 120.00330 * 174.70005 * 13 3 2 16 16 C 1.41173 * 126.17261 * 184.58263 * 15 13 3 17 17 C 1.36846 * 104.89636 * 179.97438 * 16 15 13 18 18 N 1.37819 * 107.44844 * 0.02562 * 17 16 15 19 19 N 1.28075 * 109.00677 * 359.69885 * 18 17 16 20 20 C 1.46771 * 123.00078 * 179.97438 * 18 17 16 21 21 C 1.52974 * 109.78518 * 338.48425 * 20 18 17 22 22 C 1.53284 * 110.60097 * 53.54042 * 21 20 18 23 23 C 1.46824 * 130.33504 * 180.02562 * 17 16 15 24 24 O 1.21349 * 122.51885 * 349.50843 * 23 17 16 25 25 H 1.08999 * 109.47418 * 179.97438 * 1 2 3 26 26 H 1.09004 * 109.47614 * 300.00181 * 1 2 3 27 27 H 1.09002 * 109.47138 * 60.00133 * 1 2 3 28 28 H 1.08996 * 109.47473 * 240.00440 * 2 1 3 29 29 H 1.09002 * 109.47138 * 119.99867 * 2 1 3 30 30 H 1.08998 * 109.46746 * 24.56828 * 4 3 2 31 31 H 1.09000 * 109.46873 * 144.56074 * 4 3 2 32 32 H 0.97003 * 119.99945 * 179.97438 * 8 7 5 33 33 H 1.08004 * 127.55025 * 0.03439 * 16 15 13 34 34 H 1.08997 * 109.42069 * 218.38376 * 20 18 17 35 35 H 1.09006 * 109.36285 * 98.54872 * 20 18 17 36 36 H 1.08997 * 109.24559 * 293.24748 * 21 20 18 37 37 H 1.08999 * 109.21598 * 173.80714 * 21 20 18 38 38 H 1.09001 * 109.77612 * 176.57074 * 22 21 20 39 39 H 1.09000 * 109.78353 * 55.76442 * 22 21 20 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 7 2.0182 1.3813 0.0000 4 6 2.1587 2.1086 -1.2639 5 6 3.5797 1.9963 -1.7529 6 1 4.3058 1.4392 -1.1792 7 6 3.9531 2.6047 -2.9325 8 7 5.1933 2.5072 -3.3589 9 14 2.6975 3.5688 -3.9243 10 1 2.6998 4.9863 -3.4816 11 1 3.0469 3.4998 -5.3659 12 1 1.3476 2.9867 -3.7136 13 6 2.3383 1.9829 1.1628 14 8 2.1269 1.4175 2.2180 15 6 2.9404 3.3323 1.1553 16 6 3.4073 4.0426 2.2825 17 6 3.8720 5.2289 1.7830 18 7 3.6806 5.2060 0.4183 19 7 3.1446 4.0898 0.0910 20 6 4.0610 6.3179 -0.4610 21 6 4.1638 7.6094 0.3523 22 6 5.1001 7.4189 1.5509 23 6 4.4770 6.3772 2.4694 24 8 4.4809 6.4869 3.6779 25 1 -0.3634 -1.0276 -0.0005 26 1 -0.3634 0.5139 0.8900 27 1 -0.3633 0.5138 -0.8900 28 1 1.8934 -0.5137 -0.8900 29 1 1.8933 -0.5138 0.8900 30 1 1.4843 1.6812 -2.0059 31 1 1.9097 3.1583 -1.1086 32 1 5.4558 2.9349 -4.1890 33 1 3.4003 3.7200 3.3132 34 1 3.3074 6.4386 -1.2392 35 1 5.0253 6.1014 -0.9209 36 1 3.1729 7.8880 0.7109 37 1 4.5522 8.4043 -0.2844 38 1 5.2114 8.3623 2.0855 39 1 6.0744 7.0722 1.2065 RHF calculation, no. of doubly occupied orbitals= 54 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001339358201.mol2 39 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 06:05:56 Heat of formation + Delta-G solvation = -4.266519 kcal Electronic energy + Delta-G solvation = -24025.523805 eV Core-core repulsion = 20548.642491 eV Total energy + Delta-G solvation = -3476.881314 eV No. of doubly occupied orbitals = 54 Molecular weight (most abundant/longest-lived isotopes) = 291.137 amu Computer time = 0.48 seconds Orbital eigenvalues (eV) -43.72000 -40.69377 -40.04769 -37.05084 -36.84802 -34.61360 -32.99044 -32.53646 -31.03248 -29.53118 -29.07815 -25.76314 -24.56595 -23.88651 -23.64307 -22.67904 -20.69142 -19.48944 -19.01293 -18.31863 -17.96758 -17.27760 -17.10092 -16.41464 -16.28579 -15.98994 -15.69834 -15.56751 -15.30743 -14.97741 -14.69209 -14.40165 -14.24390 -13.86398 -13.75607 -13.36418 -13.24934 -13.18922 -12.60254 -12.56081 -12.32584 -12.19707 -12.06092 -11.87541 -11.73464 -11.52359 -11.09544 -10.92860 -10.66912 -10.31063 -10.16576 -9.45309 -8.19374 -6.21435 -0.13306 0.62150 1.35163 1.38566 1.44026 1.52585 1.64546 2.16061 2.41104 2.41478 2.80377 3.14119 3.17031 3.58265 3.64233 3.70793 3.99630 4.16565 4.23273 4.30434 4.36654 4.44421 4.48986 4.52448 4.55327 4.73813 4.83387 4.90505 4.91918 4.94413 5.05005 5.06566 5.19091 5.31297 5.55088 5.58933 5.79867 6.22177 6.23505 6.53247 6.73327 6.86501 7.20787 7.40595 8.97732 Molecular weight = 291.14amu Principal moments of inertia in cm(-1) A = 0.013080 B = 0.007523 C = 0.005238 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2140.164386 B = 3721.151623 C = 5343.802456 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.152 4.152 2 C 0.105 3.895 3 N -0.585 5.585 4 C 0.214 3.786 5 C -0.505 4.505 6 H 0.017 0.983 7 C 0.030 3.970 8 N -0.948 5.948 9 Si 0.932 3.068 10 H -0.249 1.249 11 H -0.290 1.290 12 H -0.252 1.252 13 C 0.596 3.404 14 O -0.583 6.583 15 C -0.060 4.060 16 C -0.116 4.116 17 C -0.100 4.100 18 N -0.255 5.255 19 N -0.185 5.185 20 C 0.098 3.902 21 C -0.115 4.115 22 C -0.155 4.155 23 C 0.435 3.565 24 O -0.473 6.473 25 H 0.091 0.909 26 H 0.045 0.955 27 H 0.058 0.942 28 H 0.081 0.919 29 H 0.071 0.929 30 H 0.040 0.960 31 H 0.060 0.940 32 H 0.265 0.735 33 H 0.167 0.833 34 H 0.113 0.887 35 H 0.105 0.895 36 H 0.085 0.915 37 H 0.152 0.848 38 H 0.134 0.866 39 H 0.124 0.876 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -4.380 12.483 2.785 13.519 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.210 4.210 2 C -0.017 4.017 3 N -0.314 5.314 4 C 0.092 3.908 5 C -0.543 4.543 6 H 0.035 0.965 7 C -0.168 4.168 8 N -0.589 5.589 9 Si 0.755 3.245 10 H -0.173 1.173 11 H -0.216 1.216 12 H -0.176 1.176 13 C 0.383 3.617 14 O -0.464 6.464 15 C -0.214 4.214 16 C -0.144 4.144 17 C -0.221 4.221 18 N -0.051 5.051 19 N -0.026 5.026 20 C -0.020 4.020 21 C -0.153 4.153 22 C -0.192 4.192 23 C 0.313 3.687 24 O -0.346 6.346 25 H 0.110 0.890 26 H 0.064 0.936 27 H 0.077 0.923 28 H 0.099 0.901 29 H 0.089 0.911 30 H 0.058 0.942 31 H 0.077 0.923 32 H 0.074 0.926 33 H 0.185 0.815 34 H 0.132 0.868 35 H 0.124 0.876 36 H 0.104 0.896 37 H 0.170 0.830 38 H 0.152 0.848 39 H 0.142 0.858 Dipole moment (debyes) X Y Z Total from point charges -4.496 12.414 2.583 13.453 hybrid contribution 0.178 -0.462 0.145 0.516 sum -4.318 11.952 2.728 12.997 Atomic orbital electron populations 1.22026 0.93889 1.03424 1.01653 1.21565 0.95824 0.81483 1.02779 1.47946 1.61987 1.14589 1.06896 1.19912 0.95980 0.93709 0.81159 1.21181 0.94520 1.32154 1.06487 0.96468 1.25511 0.96739 0.96615 0.97914 1.70070 1.19280 1.46347 1.23158 0.85960 0.80275 0.80882 0.77361 1.17295 1.21597 1.17570 1.17144 0.77190 0.83705 0.83646 1.90654 1.57703 1.66432 1.31649 1.21900 1.11061 0.97806 0.90641 1.21961 0.99772 0.92785 0.99883 1.22600 1.12775 1.00707 0.86042 1.47116 1.39825 1.12274 1.05882 1.73931 1.10041 0.93488 1.25114 1.22717 1.04111 0.82329 0.92795 1.21951 1.01745 0.95224 0.96390 1.22547 1.00987 0.99485 0.96157 1.22440 0.74066 0.83643 0.88597 1.90579 1.50510 1.76461 1.17086 0.89004 0.93580 0.92285 0.90075 0.91087 0.94172 0.92288 0.92588 0.81542 0.86833 0.87642 0.89602 0.82974 0.84813 0.85767 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -4.50 10.24 71.98 0.74 -3.77 16 2 C 0.11 3.92 6.12 86.38 0.53 4.45 16 3 N -0.59 -25.95 2.47 -829.67 -2.05 -28.00 16 4 C 0.21 9.87 3.84 85.63 0.33 10.20 16 5 C -0.50 -27.47 8.58 25.60 0.22 -27.25 16 6 H 0.02 1.09 8.06 -2.91 -0.02 1.07 16 7 C 0.03 1.60 5.47 84.66 0.46 2.06 16 8 N -0.95 -55.28 13.96 21.45 0.30 -54.98 16 9 Si 0.93 39.43 27.47 68.60 1.88 41.32 16 10 H -0.25 -9.38 7.11 99.48 0.71 -8.67 16 11 H -0.29 -12.32 7.11 99.48 0.71 -11.62 16 12 H -0.25 -10.03 6.54 99.48 0.65 -9.37 16 13 C 0.60 27.78 7.63 86.76 0.66 28.44 16 14 O -0.58 -28.44 16.47 -3.92 -0.06 -28.50 16 15 C -0.06 -2.63 6.73 42.33 0.28 -2.34 16 16 C -0.12 -4.52 10.85 22.66 0.25 -4.27 16 17 C -0.10 -3.31 6.73 40.12 0.27 -3.04 16 18 N -0.25 -8.52 3.81 -334.80 -1.28 -9.79 16 19 N -0.18 -7.76 7.64 -48.14 -0.37 -8.13 16 20 C 0.10 2.16 7.16 86.32 0.62 2.77 16 21 C -0.12 -1.35 5.85 30.68 0.18 -1.18 16 22 C -0.15 -2.19 6.23 30.43 0.19 -2.00 16 23 C 0.44 11.43 7.10 28.42 0.20 11.63 16 24 O -0.47 -15.04 17.97 -3.24 -0.06 -15.10 16 25 H 0.09 2.13 8.14 -2.39 -0.02 2.12 16 26 H 0.05 1.45 8.14 -2.39 -0.02 1.43 16 27 H 0.06 1.70 8.14 -2.39 -0.02 1.68 16 28 H 0.08 2.93 8.11 -2.39 -0.02 2.91 16 29 H 0.07 2.69 7.36 -2.39 -0.02 2.68 16 30 H 0.04 1.76 7.09 -2.39 -0.02 1.75 16 31 H 0.06 2.69 5.06 -2.39 -0.01 2.68 16 32 H 0.27 14.40 8.31 -92.71 -0.77 13.63 16 33 H 0.17 6.22 8.06 -2.91 -0.02 6.20 16 34 H 0.11 2.37 8.14 -2.39 -0.02 2.36 16 35 H 0.11 2.30 8.14 -2.38 -0.02 2.28 16 36 H 0.09 1.00 8.14 -2.39 -0.02 0.98 16 37 H 0.15 0.55 8.14 -2.39 -0.02 0.53 16 38 H 0.13 1.22 8.14 -2.39 -0.02 1.20 16 39 H 0.12 1.51 8.14 -2.39 -0.02 1.49 16 Total: -1.00 -76.46 328.40 4.30 -72.16 By element: Atomic # 1 Polarization: 14.31 SS G_CDS: 1.01 Total: 15.32 kcal Atomic # 6 Polarization: 10.79 SS G_CDS: 4.93 Total: 15.71 kcal Atomic # 7 Polarization: -97.51 SS G_CDS: -3.39 Total: -100.91 kcal Atomic # 8 Polarization: -43.48 SS G_CDS: -0.12 Total: -43.60 kcal Atomic # 14 Polarization: 39.43 SS G_CDS: 1.88 Total: 41.32 kcal Total: -76.46 4.30 -72.16 kcal The number of atoms in the molecule is 39 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001339358201.mol2 39 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 67.896 kcal (2) G-P(sol) polarization free energy of solvation -76.464 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -8.568 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 4.302 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -72.162 kcal (6) G-S(sol) free energy of system = (1) + (5) -4.267 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.48 seconds