Wall clock time and date at job start Tue Mar 31 2020 06:23:15 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46497 * 1 3 3 N 1.28451 * 125.19524 * 2 1 4 4 C 1.31064 * 110.96649 * 179.97438 * 3 2 1 5 5 C 1.39524 * 107.60045 * 359.72330 * 4 3 2 6 6 C 1.36667 * 125.20018 * 179.97438 * 2 1 3 7 7 C 1.47158 * 126.93857 * 0.02562 * 6 2 1 8 8 O 1.21631 * 119.99973 * 91.90292 * 7 6 2 9 9 N 1.34781 * 120.00016 * 271.63080 * 7 6 2 10 10 C 1.47060 * 136.05805 * 4.59194 * 9 7 6 11 11 C 1.53241 * 88.08275 * 207.20737 * 10 9 7 12 12 O 1.42895 * 114.19805 * 87.72977 * 11 10 9 13 13 C 1.50702 * 114.32471 * 220.46802 * 11 10 9 14 14 H 1.08006 * 119.99612 * 99.26297 * 13 11 10 15 15 C 1.37872 * 120.00418 * 279.26821 * 13 11 10 16 16 N 1.31516 * 119.99703 * 10.16354 * 15 13 11 17 17 Si 1.86800 * 120.00211 * 190.16708 * 15 13 11 18 18 H 1.48506 * 109.47014 * 94.98974 * 17 15 13 19 19 H 1.48497 * 109.47109 * 214.98808 * 17 15 13 20 20 H 1.48497 * 109.47103 * 334.99055 * 17 15 13 21 21 C 1.47063 * 136.05591 * 184.96897 * 9 7 6 22 22 C 1.50856 * 109.88490 * 180.36113 * 5 4 3 23 23 C 1.54421 * 105.16728 * 17.18118 * 22 5 4 24 24 C 1.51274 * 143.02215 * 179.97438 * 4 3 2 25 25 H 1.09002 * 109.47032 * 274.85862 * 1 2 3 26 26 H 1.09000 * 109.47502 * 34.86169 * 1 2 3 27 27 H 1.09004 * 109.46829 * 154.86502 * 1 2 3 28 28 H 1.09008 * 113.46787 * 321.93764 * 10 9 7 29 29 H 1.09000 * 113.46854 * 92.37446 * 10 9 7 30 30 H 0.96702 * 114.00415 * 90.30515 * 12 11 10 31 31 H 0.97005 * 119.99517 * 180.02562 * 16 15 13 32 32 H 1.09003 * 113.46530 * 267.62166 * 21 9 7 33 33 H 1.08998 * 113.47312 * 37.99772 * 21 9 7 34 34 H 1.08999 * 110.30324 * 136.10480 * 22 5 4 35 35 H 1.08996 * 110.30369 * 258.16215 * 22 5 4 36 36 H 1.08997 * 110.78299 * 92.02762 * 23 22 5 37 37 H 1.09004 * 110.78031 * 215.27534 * 23 22 5 38 38 H 1.09004 * 110.28569 * 281.82168 * 24 4 3 39 39 H 1.08996 * 110.28691 * 43.93336 * 24 4 3 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4650 0.0000 0.0000 3 7 2.2053 1.0497 0.0000 4 6 3.4757 0.7275 0.0005 5 6 3.5578 -0.6653 0.0074 6 6 2.2528 -1.1168 0.0005 7 6 1.8014 -2.5174 0.0006 8 8 1.6486 -3.1072 -1.0521 9 7 1.5627 -3.1484 1.1674 10 6 1.5536 -2.7761 2.5901 11 6 1.8931 -4.2334 2.9206 12 8 3.2929 -4.5208 2.9311 13 6 1.1629 -4.7847 4.1181 14 1 0.2852 -5.3988 3.9797 15 6 1.6151 -4.5052 5.3902 16 7 2.5546 -3.6028 5.5705 17 14 0.8933 -5.4082 6.8575 18 1 1.7502 -6.5742 7.1916 19 1 0.8312 -4.4895 8.0225 20 1 -0.4752 -5.8790 6.5248 21 6 1.2031 -4.5139 1.5785 22 6 5.0041 -1.0940 0.0172 23 6 5.7938 0.1584 0.4561 24 6 4.8708 1.3125 0.0005 25 1 -0.3633 0.0870 1.0240 26 1 -0.3634 0.8432 -0.5874 27 1 -0.3633 -0.9304 -0.4365 28 1 2.3439 -2.0758 2.8605 29 1 0.5731 -2.4661 2.9514 30 1 3.7125 -4.4014 3.7941 31 1 2.8730 -3.4065 6.4656 32 1 0.1282 -4.6715 1.6676 33 1 1.6950 -5.2882 0.9899 34 1 5.1535 -1.9045 0.7305 35 1 5.3126 -1.4071 -0.9802 36 1 5.9315 0.1695 1.5373 37 1 6.7552 0.2082 -0.0552 38 1 5.1386 1.6511 -1.0004 39 1 4.9344 2.1381 0.7093 RHF calculation, no. of doubly occupied orbitals= 54 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001343077361.mol2 39 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 06:23:15 Heat of formation + Delta-G solvation = 43.517991 kcal Electronic energy + Delta-G solvation = -23844.730810 eV Core-core repulsion = 20369.921587 eV Total energy + Delta-G solvation = -3474.809222 eV No. of doubly occupied orbitals = 54 Molecular weight (most abundant/longest-lived isotopes) = 291.137 amu Computer time = 0.45 seconds Orbital eigenvalues (eV) -42.43414 -39.54765 -37.41366 -36.76913 -34.11211 -32.36198 -32.08143 -30.79790 -28.69647 -27.28679 -26.32931 -25.44378 -25.18151 -22.47007 -21.16961 -20.10714 -19.62366 -18.19486 -17.52307 -16.66098 -16.46738 -15.63302 -15.51751 -15.08740 -14.91120 -14.52586 -14.26164 -13.77291 -13.24477 -13.01618 -12.84075 -12.75326 -12.61204 -12.53349 -12.16913 -12.09027 -11.82732 -11.69852 -11.11993 -11.04266 -11.01845 -10.90425 -10.56597 -10.35286 -10.16612 -9.89286 -9.23697 -8.96543 -8.74301 -8.47768 -8.33362 -8.00692 -6.45498 -4.55488 1.93621 2.36927 2.79917 3.04664 3.11291 3.20569 3.22620 3.48576 4.04475 4.14296 4.69860 4.81022 4.90565 4.95035 5.09734 5.15055 5.26395 5.36410 5.39201 5.45501 5.72002 5.81805 5.84461 5.93941 6.02592 6.08837 6.12605 6.25868 6.30391 6.33644 6.43591 6.50360 6.69121 6.73329 6.98341 7.03188 7.55487 7.70905 8.26742 8.28772 8.47928 8.54468 9.15761 9.18831 10.60651 Molecular weight = 291.14amu Principal moments of inertia in cm(-1) A = 0.018561 B = 0.004957 C = 0.004614 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1508.189763 B = 5647.085967 C = 6066.503036 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.093 3.907 2 N -0.277 5.277 3 N -0.274 5.274 4 C 0.003 3.997 5 C -0.183 4.183 6 C 0.011 3.989 7 C 0.610 3.390 8 O -0.549 6.549 9 N -0.622 5.622 10 C 0.081 3.919 11 C 0.242 3.758 12 O -0.565 6.565 13 C -0.542 4.542 14 H 0.073 0.927 15 C 0.074 3.926 16 N -0.887 5.887 17 Si 0.904 3.096 18 H -0.276 1.276 19 H -0.284 1.284 20 H -0.271 1.271 21 C 0.109 3.891 22 C -0.045 4.045 23 C -0.114 4.114 24 C -0.022 4.022 25 H 0.085 0.915 26 H 0.096 0.904 27 H 0.092 0.908 28 H 0.067 0.933 29 H 0.082 0.918 30 H 0.387 0.613 31 H 0.272 0.728 32 H 0.090 0.910 33 H 0.069 0.931 34 H 0.078 0.922 35 H 0.076 0.924 36 H 0.077 0.923 37 H 0.081 0.919 38 H 0.082 0.918 39 H 0.076 0.924 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 1.328 7.606 -5.768 9.638 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.047 4.047 2 N -0.064 5.064 3 N -0.104 5.104 4 C -0.157 4.157 5 C -0.193 4.193 6 C -0.116 4.116 7 C 0.396 3.604 8 O -0.428 6.428 9 N -0.355 5.355 10 C -0.041 4.041 11 C 0.200 3.800 12 O -0.373 6.373 13 C -0.580 4.580 14 H 0.092 0.908 15 C -0.130 4.130 16 N -0.525 5.525 17 Si 0.731 3.269 18 H -0.202 1.202 19 H -0.210 1.210 20 H -0.195 1.195 21 C -0.012 4.012 22 C -0.083 4.083 23 C -0.152 4.152 24 C -0.061 4.061 25 H 0.104 0.896 26 H 0.114 0.886 27 H 0.111 0.889 28 H 0.085 0.915 29 H 0.100 0.900 30 H 0.239 0.761 31 H 0.082 0.918 32 H 0.108 0.892 33 H 0.088 0.912 34 H 0.097 0.903 35 H 0.095 0.905 36 H 0.096 0.904 37 H 0.099 0.901 38 H 0.101 0.899 39 H 0.095 0.905 Dipole moment (debyes) X Y Z Total from point charges 0.349 8.274 -7.005 10.847 hybrid contribution -0.041 -0.806 1.461 1.669 sum 0.308 7.468 -5.544 9.306 Atomic orbital electron populations 1.22102 0.73014 1.05058 1.04510 1.45587 1.07104 1.01156 1.52603 1.72576 1.02906 1.12865 1.22059 1.22689 0.92610 0.94386 1.05969 1.21056 0.93848 0.95353 1.09071 1.20478 0.90899 0.88772 1.11500 1.16438 0.77849 0.83557 0.82575 1.90780 1.54095 1.67130 1.30748 1.49753 1.64910 1.14473 1.06326 1.24126 1.01111 1.03513 0.75388 1.19451 0.80949 0.88733 0.90859 1.86083 1.22056 1.90822 1.38387 1.21333 1.13473 1.33435 0.89747 0.90836 1.25085 0.94788 0.93772 0.99374 1.69776 1.29234 1.29766 1.23692 0.86383 0.79665 0.79679 0.81205 1.20187 1.21010 1.19522 1.23399 0.99897 0.82953 0.94991 1.20357 0.87573 0.98336 1.02022 1.22418 0.97706 0.93213 1.01887 1.20417 0.85586 0.98011 1.02107 0.89600 0.88567 0.88946 0.91470 0.90035 0.76137 0.91821 0.89226 0.91218 0.90338 0.90540 0.90440 0.90072 0.89933 0.90538 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.09 1.20 11.22 59.85 0.67 1.87 16 2 N -0.28 -4.82 3.75 -63.95 -0.24 -5.06 16 3 N -0.27 -4.84 11.91 33.78 0.40 -4.43 16 4 C 0.00 0.05 8.13 -82.16 -0.67 -0.62 16 5 C -0.18 -3.35 7.02 -104.12 -0.73 -4.08 16 6 C 0.01 0.21 6.53 -82.14 -0.54 -0.32 16 7 C 0.61 13.12 7.26 -12.64 -0.09 13.03 16 8 O -0.55 -13.08 17.89 5.25 0.09 -12.99 16 9 N -0.62 -13.26 3.69 -186.79 -0.69 -13.95 16 10 C 0.08 1.77 7.80 -8.65 -0.07 1.70 16 11 C 0.24 5.61 1.40 -91.39 -0.13 5.48 16 12 O -0.56 -13.86 13.56 -35.23 -0.48 -14.34 16 13 C -0.54 -13.07 8.65 -34.44 -0.30 -13.37 16 14 H 0.07 1.73 7.84 -52.48 -0.41 1.32 16 15 C 0.07 1.78 5.21 -17.82 -0.09 1.69 16 16 N -0.89 -21.90 11.82 55.43 0.65 -21.24 16 17 Si 0.90 18.88 29.55 -169.99 -5.02 13.86 16 18 H -0.28 -5.80 7.11 56.52 0.40 -5.40 16 19 H -0.28 -5.97 7.11 56.52 0.40 -5.57 16 20 H -0.27 -5.61 7.11 56.52 0.40 -5.21 16 21 C 0.11 2.31 8.04 -8.52 -0.07 2.24 16 22 C -0.04 -0.67 6.75 -27.06 -0.18 -0.86 16 23 C -0.11 -1.31 7.08 -25.12 -0.18 -1.49 16 24 C -0.02 -0.27 6.77 -26.74 -0.18 -0.45 16 25 H 0.09 0.99 8.14 -51.93 -0.42 0.57 16 26 H 0.10 0.98 8.14 -51.93 -0.42 0.56 16 27 H 0.09 1.17 7.66 -51.93 -0.40 0.77 16 28 H 0.07 1.56 8.14 -51.92 -0.42 1.14 16 29 H 0.08 1.70 8.10 -51.93 -0.42 1.28 16 30 H 0.39 9.51 7.09 45.56 0.32 9.84 16 31 H 0.27 6.42 8.31 -40.82 -0.34 6.08 16 32 H 0.09 1.70 8.10 -51.93 -0.42 1.28 16 33 H 0.07 1.49 8.14 -51.93 -0.42 1.06 16 34 H 0.08 1.27 8.14 -51.93 -0.42 0.85 16 35 H 0.08 1.06 8.14 -51.93 -0.42 0.64 16 36 H 0.08 0.89 8.14 -51.93 -0.42 0.46 16 37 H 0.08 0.71 8.14 -51.93 -0.42 0.28 16 38 H 0.08 0.85 8.14 -51.93 -0.42 0.43 16 39 H 0.08 0.82 8.14 -51.93 -0.42 0.40 16 LS Contribution 333.85 15.07 5.03 5.03 Total: -1.00 -30.01 333.85 -7.49 -37.50 By element: Atomic # 1 Polarization: 15.48 SS G_CDS: -4.69 Total: 10.79 kcal Atomic # 6 Polarization: 7.38 SS G_CDS: -2.55 Total: 4.83 kcal Atomic # 7 Polarization: -44.81 SS G_CDS: 0.13 Total: -44.69 kcal Atomic # 8 Polarization: -26.94 SS G_CDS: -0.38 Total: -27.33 kcal Atomic # 14 Polarization: 18.88 SS G_CDS: -5.02 Total: 13.86 kcal Total LS contribution 5.03 Total: 5.03 kcal Total: -30.01 -7.49 -37.50 kcal The number of atoms in the molecule is 39 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001343077361.mol2 39 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 81.021 kcal (2) G-P(sol) polarization free energy of solvation -30.013 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 51.007 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.489 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -37.503 kcal (6) G-S(sol) free energy of system = (1) + (5) 43.518 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.45 seconds