Wall clock time and date at job start Tue Mar 31 2020 06:23:14 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46497 * 1 3 3 N 1.28451 * 125.19524 * 2 1 4 4 C 1.31064 * 110.96649 * 179.97438 * 3 2 1 5 5 C 1.39524 * 107.60045 * 359.72330 * 4 3 2 6 6 C 1.36667 * 125.20018 * 179.97438 * 2 1 3 7 7 C 1.47158 * 126.93857 * 0.02562 * 6 2 1 8 8 O 1.21631 * 119.99973 * 91.90292 * 7 6 2 9 9 N 1.34781 * 120.00016 * 271.63080 * 7 6 2 10 10 C 1.47060 * 136.05805 * 4.59194 * 9 7 6 11 11 C 1.53241 * 88.08275 * 207.20737 * 10 9 7 12 12 O 1.42895 * 114.19805 * 87.72977 * 11 10 9 13 13 C 1.50702 * 114.32471 * 220.46802 * 11 10 9 14 14 H 1.08006 * 119.99612 * 99.26297 * 13 11 10 15 15 C 1.37872 * 120.00418 * 279.26821 * 13 11 10 16 16 N 1.31516 * 119.99703 * 10.16354 * 15 13 11 17 17 Si 1.86800 * 120.00211 * 190.16708 * 15 13 11 18 18 H 1.48506 * 109.47014 * 94.98974 * 17 15 13 19 19 H 1.48497 * 109.47109 * 214.98808 * 17 15 13 20 20 H 1.48497 * 109.47103 * 334.99055 * 17 15 13 21 21 C 1.47063 * 136.05591 * 184.96897 * 9 7 6 22 22 C 1.50856 * 109.88490 * 180.36113 * 5 4 3 23 23 C 1.54421 * 105.16728 * 17.18118 * 22 5 4 24 24 C 1.51274 * 143.02215 * 179.97438 * 4 3 2 25 25 H 1.09002 * 109.47032 * 274.85862 * 1 2 3 26 26 H 1.09000 * 109.47502 * 34.86169 * 1 2 3 27 27 H 1.09004 * 109.46829 * 154.86502 * 1 2 3 28 28 H 1.09008 * 113.46787 * 321.93764 * 10 9 7 29 29 H 1.09000 * 113.46854 * 92.37446 * 10 9 7 30 30 H 0.96702 * 114.00415 * 90.30515 * 12 11 10 31 31 H 0.97005 * 119.99517 * 180.02562 * 16 15 13 32 32 H 1.09003 * 113.46530 * 267.62166 * 21 9 7 33 33 H 1.08998 * 113.47312 * 37.99772 * 21 9 7 34 34 H 1.08999 * 110.30324 * 136.10480 * 22 5 4 35 35 H 1.08996 * 110.30369 * 258.16215 * 22 5 4 36 36 H 1.08997 * 110.78299 * 92.02762 * 23 22 5 37 37 H 1.09004 * 110.78031 * 215.27534 * 23 22 5 38 38 H 1.09004 * 110.28569 * 281.82168 * 24 4 3 39 39 H 1.08996 * 110.28691 * 43.93336 * 24 4 3 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4650 0.0000 0.0000 3 7 2.2053 1.0497 0.0000 4 6 3.4757 0.7275 0.0005 5 6 3.5578 -0.6653 0.0074 6 6 2.2528 -1.1168 0.0005 7 6 1.8014 -2.5174 0.0006 8 8 1.6486 -3.1072 -1.0521 9 7 1.5627 -3.1484 1.1674 10 6 1.5536 -2.7761 2.5901 11 6 1.8931 -4.2334 2.9206 12 8 3.2929 -4.5208 2.9311 13 6 1.1629 -4.7847 4.1181 14 1 0.2852 -5.3988 3.9797 15 6 1.6151 -4.5052 5.3902 16 7 2.5546 -3.6028 5.5705 17 14 0.8933 -5.4082 6.8575 18 1 1.7502 -6.5742 7.1916 19 1 0.8312 -4.4895 8.0225 20 1 -0.4752 -5.8790 6.5248 21 6 1.2031 -4.5139 1.5785 22 6 5.0041 -1.0940 0.0172 23 6 5.7938 0.1584 0.4561 24 6 4.8708 1.3125 0.0005 25 1 -0.3633 0.0870 1.0240 26 1 -0.3634 0.8432 -0.5874 27 1 -0.3633 -0.9304 -0.4365 28 1 2.3439 -2.0758 2.8605 29 1 0.5731 -2.4661 2.9514 30 1 3.7125 -4.4014 3.7941 31 1 2.8730 -3.4065 6.4656 32 1 0.1282 -4.6715 1.6676 33 1 1.6950 -5.2882 0.9899 34 1 5.1535 -1.9045 0.7305 35 1 5.3126 -1.4071 -0.9802 36 1 5.9315 0.1695 1.5373 37 1 6.7552 0.2082 -0.0552 38 1 5.1386 1.6511 -1.0004 39 1 4.9344 2.1381 0.7093 RHF calculation, no. of doubly occupied orbitals= 54 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001343077361.mol2 39 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 06:23:14 Heat of formation + Delta-G solvation = 22.788197 kcal Electronic energy + Delta-G solvation = -23845.629721 eV Core-core repulsion = 20369.921587 eV Total energy + Delta-G solvation = -3475.708134 eV No. of doubly occupied orbitals = 54 Molecular weight (most abundant/longest-lived isotopes) = 291.137 amu Computer time = 0.51 seconds Orbital eigenvalues (eV) -43.74101 -41.29813 -39.18301 -37.89434 -35.97984 -34.24591 -33.27133 -32.17785 -30.34544 -28.49762 -27.53274 -27.13487 -26.93491 -23.91900 -22.44134 -21.44336 -21.19281 -19.82036 -19.20732 -18.25926 -17.90067 -17.21303 -16.98765 -16.78377 -16.15925 -16.04194 -15.90179 -15.16766 -14.86056 -14.58085 -14.43535 -13.87724 -13.84486 -13.72698 -13.70978 -13.61731 -13.52668 -12.85282 -12.76741 -12.76017 -12.26063 -12.22486 -12.06301 -11.83705 -11.65422 -11.47827 -11.03607 -10.81497 -10.31643 -10.09886 -9.78690 -9.60469 -8.29231 -6.45450 0.52096 0.95127 1.46168 1.46546 1.51739 1.55582 1.59721 1.91598 2.39841 2.86359 2.91531 3.19607 3.59638 3.85198 3.87852 4.03455 4.14320 4.18557 4.21577 4.26794 4.34783 4.39250 4.54084 4.61983 4.68441 4.78439 4.80924 4.85866 4.87718 4.99990 5.03619 5.15264 5.18688 5.37160 5.45769 5.68964 5.78147 5.84804 6.54011 6.61408 6.82611 6.97027 7.25211 7.28690 8.76613 Molecular weight = 291.14amu Principal moments of inertia in cm(-1) A = 0.018561 B = 0.004957 C = 0.004614 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1508.189763 B = 5647.085967 C = 6066.503036 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.083 3.917 2 N -0.277 5.277 3 N -0.283 5.283 4 C -0.003 4.003 5 C -0.206 4.206 6 C -0.024 4.024 7 C 0.614 3.386 8 O -0.578 6.578 9 N -0.621 5.621 10 C 0.098 3.902 11 C 0.226 3.774 12 O -0.576 6.576 13 C -0.557 4.557 14 H 0.078 0.922 15 C 0.037 3.963 16 N -0.908 5.908 17 Si 0.965 3.035 18 H -0.277 1.277 19 H -0.284 1.284 20 H -0.266 1.266 21 C 0.111 3.889 22 C -0.050 4.050 23 C -0.102 4.102 24 C -0.020 4.020 25 H 0.098 0.902 26 H 0.123 0.877 27 H 0.089 0.911 28 H 0.047 0.953 29 H 0.092 0.908 30 H 0.384 0.616 31 H 0.274 0.726 32 H 0.114 0.886 33 H 0.064 0.936 34 H 0.057 0.943 35 H 0.086 0.914 36 H 0.075 0.925 37 H 0.117 0.883 38 H 0.107 0.893 39 H 0.094 0.906 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 1.422 8.621 -5.513 10.331 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.055 4.055 2 N -0.065 5.065 3 N -0.113 5.113 4 C -0.162 4.162 5 C -0.216 4.216 6 C -0.152 4.152 7 C 0.401 3.599 8 O -0.459 6.459 9 N -0.353 5.353 10 C -0.025 4.025 11 C 0.185 3.815 12 O -0.384 6.384 13 C -0.594 4.594 14 H 0.096 0.904 15 C -0.165 4.165 16 N -0.546 5.546 17 Si 0.790 3.210 18 H -0.203 1.203 19 H -0.210 1.210 20 H -0.190 1.190 21 C -0.010 4.010 22 C -0.088 4.088 23 C -0.140 4.140 24 C -0.058 4.058 25 H 0.117 0.883 26 H 0.142 0.858 27 H 0.108 0.892 28 H 0.066 0.934 29 H 0.110 0.890 30 H 0.235 0.765 31 H 0.083 0.917 32 H 0.131 0.869 33 H 0.082 0.918 34 H 0.075 0.925 35 H 0.104 0.896 36 H 0.094 0.906 37 H 0.135 0.865 38 H 0.125 0.875 39 H 0.112 0.888 Dipole moment (debyes) X Y Z Total from point charges 0.427 9.294 -6.750 11.494 hybrid contribution -0.068 -1.122 1.361 1.765 sum 0.359 8.171 -5.389 9.795 Atomic orbital electron populations 1.22427 0.71040 1.06165 1.05901 1.45960 1.08308 1.00325 1.51942 1.72552 1.03581 1.12897 1.22304 1.23549 0.93769 0.94160 1.04765 1.21693 0.94676 0.96693 1.08576 1.20425 0.92194 0.88410 1.14125 1.16674 0.76938 0.84309 0.81955 1.90744 1.55399 1.68178 1.31572 1.49757 1.64832 1.14490 1.06219 1.23912 1.00829 1.02177 0.75565 1.19671 0.80342 0.89692 0.91822 1.86076 1.23090 1.91039 1.38222 1.21542 1.13844 1.33785 0.90277 0.90422 1.25732 0.95119 0.94174 1.01506 1.69853 1.30004 1.30482 1.24244 0.85437 0.79054 0.78328 0.78184 1.20293 1.21014 1.18984 1.23461 1.01032 0.82841 0.93708 1.20537 0.86604 0.99593 1.02102 1.22446 0.98596 0.90712 1.02207 1.20655 0.82660 0.98445 1.04077 0.88326 0.85844 0.89214 0.93430 0.89007 0.76518 0.91682 0.86852 0.91783 0.92478 0.89607 0.90606 0.86474 0.87521 0.88761 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.08 2.08 11.22 127.77 1.43 3.51 16 2 N -0.28 -9.55 3.75 -356.23 -1.34 -10.89 16 3 N -0.28 -9.70 11.91 -47.03 -0.56 -10.26 16 4 C 0.00 -0.11 8.13 43.17 0.35 0.24 16 5 C -0.21 -7.52 7.02 -19.54 -0.14 -7.65 16 6 C -0.02 -0.96 6.53 40.70 0.27 -0.69 16 7 C 0.61 26.88 7.26 86.58 0.63 27.51 16 8 O -0.58 -28.10 17.89 -4.13 -0.07 -28.17 16 9 N -0.62 -26.77 3.69 -863.60 -3.19 -29.96 16 10 C 0.10 4.30 7.80 83.09 0.65 4.95 16 11 C 0.23 10.54 1.40 -11.29 -0.02 10.53 16 12 O -0.58 -28.80 13.56 -148.98 -2.02 -30.82 16 13 C -0.56 -26.59 8.65 25.60 0.22 -26.37 16 14 H 0.08 3.57 7.84 -2.91 -0.02 3.55 16 15 C 0.04 1.76 5.21 84.65 0.44 2.20 16 16 N -0.91 -44.74 11.82 21.45 0.25 -44.48 16 17 Si 0.96 38.09 29.55 68.60 2.03 40.12 16 18 H -0.28 -10.94 7.11 99.48 0.71 -10.23 16 19 H -0.28 -11.17 7.11 99.48 0.71 -10.46 16 20 H -0.27 -10.20 7.11 99.48 0.71 -9.49 16 21 C 0.11 4.70 8.04 83.17 0.67 5.37 16 22 C -0.05 -1.49 6.75 30.38 0.21 -1.28 16 23 C -0.10 -2.09 7.08 31.64 0.22 -1.86 16 24 C -0.02 -0.42 6.77 30.59 0.21 -0.21 16 25 H 0.10 2.18 8.14 -2.39 -0.02 2.16 16 26 H 0.12 2.33 8.14 -2.39 -0.02 2.31 16 27 H 0.09 2.26 7.66 -2.38 -0.02 2.24 16 28 H 0.05 2.26 8.14 -2.38 -0.02 2.24 16 29 H 0.09 3.81 8.10 -2.39 -0.02 3.79 16 30 H 0.38 19.32 7.09 -74.06 -0.53 18.79 16 31 H 0.27 12.85 8.31 -92.70 -0.77 12.07 16 32 H 0.11 4.21 8.10 -2.39 -0.02 4.19 16 33 H 0.06 2.75 8.14 -2.39 -0.02 2.73 16 34 H 0.06 1.90 8.14 -2.39 -0.02 1.88 16 35 H 0.09 2.32 8.14 -2.39 -0.02 2.31 16 36 H 0.08 1.58 8.14 -2.39 -0.02 1.56 16 37 H 0.12 1.58 8.14 -2.39 -0.02 1.56 16 38 H 0.11 1.81 8.14 -2.39 -0.02 1.79 16 39 H 0.09 1.72 8.14 -2.39 -0.02 1.70 16 Total: -1.00 -64.34 333.85 0.79 -63.55 By element: Atomic # 1 Polarization: 34.14 SS G_CDS: 0.55 Total: 34.69 kcal Atomic # 6 Polarization: 11.09 SS G_CDS: 5.14 Total: 16.23 kcal Atomic # 7 Polarization: -90.76 SS G_CDS: -4.83 Total: -95.59 kcal Atomic # 8 Polarization: -56.90 SS G_CDS: -2.09 Total: -58.99 kcal Atomic # 14 Polarization: 38.09 SS G_CDS: 2.03 Total: 40.12 kcal Total: -64.34 0.79 -63.55 kcal The number of atoms in the molecule is 39 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001343077361.mol2 39 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 86.334 kcal (2) G-P(sol) polarization free energy of solvation -64.340 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 21.994 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 0.794 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -63.546 kcal (6) G-S(sol) free energy of system = (1) + (5) 22.788 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.51 seconds