Wall clock time and date at job start Tue Mar 31 2020 06:16:30 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.17405 * 1 3 3 C 1.47199 * 179.97438 * 2 1 4 4 N 1.46504 * 109.46879 * 195.26182 * 3 2 1 5 5 C 1.36939 * 120.00018 * 263.90386 * 4 3 2 6 6 H 1.07997 * 119.99839 * 199.32534 * 5 4 3 7 7 C 1.38806 * 119.99806 * 19.33310 * 5 4 3 8 8 N 1.31614 * 120.00674 * 18.16041 * 7 5 4 9 9 Si 1.86810 * 119.99790 * 198.16313 * 7 5 4 10 10 H 1.48500 * 109.46790 * 59.99545 * 9 7 5 11 11 H 1.48498 * 109.47271 * 179.97438 * 9 7 5 12 12 H 1.48497 * 109.46877 * 300.00019 * 9 7 5 13 13 C 1.46502 * 119.99785 * 83.90767 * 4 3 2 14 14 C 1.50698 * 109.47226 * 88.94754 * 13 4 3 15 15 C 1.35344 * 127.24891 * 3.53681 * 14 13 4 16 16 N 1.35048 * 107.24169 * 180.14792 * 15 14 13 17 17 C 1.46499 * 124.88334 * 179.83373 * 16 15 14 18 18 N 1.28473 * 110.23766 * 359.57571 * 16 15 14 19 19 C 1.31851 * 110.06553 * 0.25882 * 18 16 15 20 20 C 1.47586 * 126.52519 * 179.97438 * 19 18 16 21 21 O 1.21493 * 119.99871 * 185.02552 * 20 19 18 22 22 O 1.34727 * 119.99947 * 5.03651 * 20 19 18 23 23 C 1.45195 * 116.99915 * 179.97438 * 22 20 19 24 24 C 1.53000 * 109.47155 * 179.97438 * 23 22 20 25 25 H 4.40644 * 5.51442 * 179.97438 * 4 1 2 26 26 H 1.09001 * 109.47214 * 75.26336 * 3 2 1 27 27 H 1.08997 * 109.47285 * 315.26424 * 3 2 1 28 28 H 0.97000 * 120.00681 * 180.02562 * 8 7 5 29 29 H 1.09000 * 109.47251 * 328.94225 * 13 4 3 30 30 H 1.09002 * 109.46740 * 208.94787 * 13 4 3 31 31 H 1.07998 * 126.38000 * 0.02653 * 15 14 13 32 32 H 1.08999 * 109.47296 * 269.72888 * 17 16 15 33 33 H 1.08999 * 109.46569 * 29.72478 * 17 16 15 34 34 H 1.08998 * 109.47054 * 149.72382 * 17 16 15 35 35 H 1.09000 * 109.47324 * 299.99214 * 23 22 20 36 36 H 1.09000 * 109.47393 * 59.99921 * 23 22 20 37 37 H 1.08995 * 109.47546 * 179.97438 * 24 23 22 38 38 H 1.08999 * 109.47226 * 299.99876 * 24 23 22 39 39 H 1.09001 * 109.47498 * 59.99514 * 24 23 22 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.1740 0.0000 0.0000 3 6 2.6460 0.0007 0.0000 4 7 3.1337 1.3334 0.3636 5 6 3.4803 2.2263 -0.6152 6 1 4.1174 3.0657 -0.3792 7 6 3.0125 2.0524 -1.9104 8 7 1.9772 1.2720 -2.1371 9 14 3.8524 2.9261 -3.3320 10 1 5.2736 2.5014 -3.4036 11 1 3.1671 2.5766 -4.6022 12 1 3.7846 4.3943 -3.1201 13 6 3.2507 1.7109 1.7743 14 6 4.6140 1.3236 2.2866 15 6 5.6316 0.7809 1.5782 16 7 6.6598 0.5941 2.4335 17 6 7.9586 0.0220 2.0701 18 7 6.3372 0.9951 3.6106 19 6 5.1020 1.4563 3.6087 20 6 4.3676 2.0057 4.7650 21 8 3.1982 2.3148 4.6508 22 8 4.9941 2.1646 5.9471 23 6 4.2102 2.7108 7.0404 24 6 5.0842 2.8165 8.2917 25 1 -1.0502 -0.0003 -0.0003 26 1 3.0095 -0.2606 -0.9939 27 1 3.0097 -0.7292 0.7233 28 1 1.6505 1.1502 -3.0423 29 1 2.4848 1.1949 2.3533 30 1 3.1175 2.7881 1.8744 31 1 5.6223 0.5401 0.5254 32 1 7.9295 -1.0594 2.2033 33 1 8.1788 0.2539 1.0280 34 1 8.7338 0.4461 2.7083 35 1 3.8456 3.7009 6.7668 36 1 3.3635 2.0551 7.2435 37 1 4.4959 3.2270 9.1123 38 1 5.4485 1.8263 8.5651 39 1 5.9313 3.4720 8.0889 RHF calculation, no. of doubly occupied orbitals= 54 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001352097381.mol2 39 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 06:16:30 Heat of formation + Delta-G solvation = 82.864374 kcal Electronic energy + Delta-G solvation = -23069.428027 eV Core-core repulsion = 19596.324992 eV Total energy + Delta-G solvation = -3473.103035 eV No. of doubly occupied orbitals = 54 Molecular weight (most abundant/longest-lived isotopes) = 291.137 amu Computer time = 0.54 seconds Orbital eigenvalues (eV) -42.29858 -39.88346 -36.46888 -36.06442 -33.42791 -31.95221 -31.50133 -31.45471 -29.70248 -27.81997 -26.31056 -25.68280 -23.84299 -22.29723 -21.90849 -20.09505 -19.70392 -17.46510 -17.35053 -16.84649 -16.51070 -16.18429 -15.80209 -15.71879 -14.90355 -14.02846 -13.69909 -13.55912 -13.53586 -13.25790 -12.96402 -12.81945 -12.73293 -12.53719 -11.89996 -11.84960 -11.61613 -11.53285 -11.34923 -11.01606 -10.76118 -10.59580 -10.44433 -10.39901 -10.26866 -9.95053 -8.91739 -8.90015 -8.77877 -8.37310 -8.19044 -6.98576 -5.75934 -3.21640 1.64255 2.53516 2.58936 3.01795 3.36556 3.43160 3.43873 3.52160 4.22339 4.46010 4.54680 4.56027 4.88551 4.90309 5.01597 5.08697 5.22064 5.25951 5.33865 5.37975 5.47314 5.69817 5.70729 5.77396 5.88319 5.92443 6.12677 6.33284 6.51655 6.60217 6.71972 6.80629 6.99839 7.17573 7.27240 7.49748 7.77808 7.93796 8.27647 8.34647 9.14473 9.27372 9.79235 10.27134 11.27251 Molecular weight = 291.14amu Principal moments of inertia in cm(-1) A = 0.015990 B = 0.004666 C = 0.004137 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1750.724434 B = 5999.441496 C = 6765.830604 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.303 4.303 2 C -0.094 4.094 3 C 0.270 3.730 4 N -0.586 5.586 5 C -0.264 4.264 6 H 0.074 0.926 7 C 0.005 3.995 8 N -0.890 5.890 9 Si 0.901 3.099 10 H -0.285 1.285 11 H -0.292 1.292 12 H -0.284 1.284 13 C 0.217 3.783 14 C -0.137 4.137 15 C 0.003 3.997 16 N -0.287 5.287 17 C 0.090 3.910 18 N -0.251 5.251 19 C -0.019 4.019 20 C 0.557 3.443 21 O -0.495 6.495 22 O -0.349 6.349 23 C 0.061 3.939 24 C -0.151 4.151 25 H 0.189 0.811 26 H 0.096 0.904 27 H 0.034 0.966 28 H 0.255 0.745 29 H 0.058 0.942 30 H 0.066 0.934 31 H 0.192 0.808 32 H 0.082 0.918 33 H 0.096 0.904 34 H 0.091 0.909 35 H 0.070 0.930 36 H 0.070 0.930 37 H 0.077 0.923 38 H 0.065 0.935 39 H 0.065 0.935 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 10.159 -2.473 12.730 16.473 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.323 4.323 2 C -0.096 4.096 3 C 0.145 3.855 4 N -0.305 5.305 5 C -0.392 4.392 6 H 0.092 0.908 7 C -0.194 4.194 8 N -0.533 5.533 9 Si 0.731 3.269 10 H -0.211 1.211 11 H -0.218 1.218 12 H -0.210 1.210 13 C 0.089 3.911 14 C -0.149 4.149 15 C -0.138 4.138 16 N -0.077 5.077 17 C -0.050 4.050 18 N -0.090 5.090 19 C -0.177 4.177 20 C 0.400 3.600 21 O -0.379 6.379 22 O -0.265 6.265 23 C -0.013 4.013 24 C -0.208 4.208 25 H 0.207 0.793 26 H 0.114 0.886 27 H 0.052 0.948 28 H 0.065 0.935 29 H 0.077 0.923 30 H 0.084 0.916 31 H 0.209 0.791 32 H 0.100 0.900 33 H 0.115 0.885 34 H 0.110 0.890 35 H 0.088 0.912 36 H 0.088 0.912 37 H 0.096 0.904 38 H 0.084 0.916 39 H 0.084 0.916 Dipole moment (debyes) X Y Z Total from point charges 10.750 -2.606 13.208 17.228 hybrid contribution -0.677 0.747 -1.443 1.760 sum 10.074 -1.860 11.765 15.600 Atomic orbital electron populations 1.24175 0.95355 1.05103 1.07618 1.24271 0.95326 0.95824 0.94229 1.17782 0.82913 0.85414 0.99439 1.44039 1.74791 1.11637 1.00036 1.19180 1.24579 1.07355 0.88134 0.90803 1.24953 0.96416 0.99657 0.98405 1.70080 1.22238 1.41085 1.19924 0.86396 0.79009 0.79409 0.82096 1.21144 1.21761 1.21034 1.19116 0.88017 0.98804 0.85134 1.21768 1.00445 1.02735 0.89958 1.22819 0.86921 1.05634 0.98434 1.45388 1.13126 1.43775 1.05383 1.22107 0.80771 0.99388 1.02780 1.73503 1.15187 1.14768 1.05501 1.20556 0.92772 1.11215 0.93118 1.19619 0.84419 0.74806 0.81189 1.90875 1.16156 1.47032 1.83867 1.86628 1.44263 1.76033 1.19622 1.23008 0.94271 0.99111 0.84934 1.21784 1.00556 1.03242 0.95180 0.79345 0.88575 0.94847 0.93472 0.92347 0.91582 0.79126 0.89973 0.88524 0.88988 0.91171 0.91211 0.90405 0.91554 0.91552 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.30 -7.15 19.25 29.55 0.57 -6.58 16 2 C -0.09 -2.33 11.53 -37.12 -0.43 -2.76 16 3 C 0.27 6.32 5.41 -6.83 -0.04 6.28 16 4 N -0.59 -14.04 1.82 -177.95 -0.32 -14.37 16 5 C -0.26 -6.82 9.66 -15.06 -0.15 -6.97 16 6 H 0.07 1.90 7.89 -52.49 -0.41 1.49 16 7 C 0.00 0.13 4.94 -17.43 -0.09 0.04 16 8 N -0.89 -24.79 9.35 55.49 0.52 -24.27 16 9 Si 0.90 20.92 29.59 -169.99 -5.03 15.89 16 10 H -0.28 -6.42 7.11 56.52 0.40 -6.02 16 11 H -0.29 -6.93 7.11 56.52 0.40 -6.53 16 12 H -0.28 -6.68 7.11 56.52 0.40 -6.28 16 13 C 0.22 4.80 5.20 -5.19 -0.03 4.77 16 14 C -0.14 -2.68 6.20 -104.39 -0.65 -3.33 16 15 C 0.00 0.05 10.79 -17.17 -0.19 -0.14 16 16 N -0.29 -4.25 3.70 -68.13 -0.25 -4.50 16 17 C 0.09 0.81 11.31 59.85 0.68 1.48 16 18 N -0.25 -4.28 11.99 33.41 0.40 -3.88 16 19 C -0.02 -0.36 7.16 -82.78 -0.59 -0.96 16 20 C 0.56 10.11 7.97 34.54 0.28 10.39 16 21 O -0.49 -9.83 15.67 -19.26 -0.30 -10.14 16 22 O -0.35 -5.45 10.23 -40.56 -0.42 -5.86 16 23 C 0.06 0.72 6.19 37.16 0.23 0.95 16 24 C -0.15 -1.28 10.29 37.16 0.38 -0.90 16 25 H 0.19 3.76 7.80 -54.08 -0.42 3.34 16 26 H 0.10 2.39 6.45 -51.93 -0.34 2.05 16 27 H 0.03 0.70 8.12 -51.93 -0.42 0.28 16 28 H 0.25 7.03 8.31 -40.82 -0.34 6.69 16 29 H 0.06 1.33 7.96 -51.93 -0.41 0.92 16 30 H 0.07 1.54 8.03 -51.93 -0.42 1.12 16 31 H 0.19 3.21 7.88 -52.49 -0.41 2.79 16 32 H 0.08 0.60 8.14 -51.93 -0.42 0.18 16 33 H 0.10 0.69 8.13 -51.93 -0.42 0.26 16 34 H 0.09 0.70 8.14 -51.93 -0.42 0.28 16 35 H 0.07 0.81 8.14 -51.93 -0.42 0.39 16 36 H 0.07 0.80 8.14 -51.93 -0.42 0.38 16 37 H 0.08 0.49 8.14 -51.93 -0.42 0.07 16 38 H 0.07 0.55 8.14 -51.93 -0.42 0.13 16 39 H 0.07 0.56 8.14 -51.93 -0.42 0.14 16 LS Contribution 347.13 15.07 5.23 5.23 Total: -1.00 -32.39 347.13 -5.54 -37.93 By element: Atomic # 1 Polarization: 7.03 SS G_CDS: -5.35 Total: 1.67 kcal Atomic # 6 Polarization: 2.30 SS G_CDS: -0.02 Total: 2.29 kcal Atomic # 7 Polarization: -47.36 SS G_CDS: 0.34 Total: -47.02 kcal Atomic # 8 Polarization: -15.28 SS G_CDS: -0.72 Total: -16.00 kcal Atomic # 14 Polarization: 20.92 SS G_CDS: -5.03 Total: 15.89 kcal Total LS contribution 5.23 Total: 5.23 kcal Total: -32.39 -5.54 -37.93 kcal The number of atoms in the molecule is 39 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001352097381.mol2 39 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 120.798 kcal (2) G-P(sol) polarization free energy of solvation -32.393 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 88.405 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -5.540 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -37.934 kcal (6) G-S(sol) free energy of system = (1) + (5) 82.864 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.55 seconds