Wall clock time and date at job start Tue Mar 31 2020 06:16:29 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.17405 * 1 3 3 C 1.47199 * 179.97438 * 2 1 4 4 N 1.46504 * 109.46879 * 195.26182 * 3 2 1 5 5 C 1.36939 * 120.00018 * 263.90386 * 4 3 2 6 6 H 1.07997 * 119.99839 * 199.32534 * 5 4 3 7 7 C 1.38806 * 119.99806 * 19.33310 * 5 4 3 8 8 N 1.31614 * 120.00674 * 18.16041 * 7 5 4 9 9 Si 1.86810 * 119.99790 * 198.16313 * 7 5 4 10 10 H 1.48500 * 109.46790 * 59.99545 * 9 7 5 11 11 H 1.48498 * 109.47271 * 179.97438 * 9 7 5 12 12 H 1.48497 * 109.46877 * 300.00019 * 9 7 5 13 13 C 1.46502 * 119.99785 * 83.90767 * 4 3 2 14 14 C 1.50698 * 109.47226 * 88.94754 * 13 4 3 15 15 C 1.35344 * 127.24891 * 3.53681 * 14 13 4 16 16 N 1.35048 * 107.24169 * 180.14792 * 15 14 13 17 17 C 1.46499 * 124.88334 * 179.83373 * 16 15 14 18 18 N 1.28473 * 110.23766 * 359.57571 * 16 15 14 19 19 C 1.31851 * 110.06553 * 0.25882 * 18 16 15 20 20 C 1.47586 * 126.52519 * 179.97438 * 19 18 16 21 21 O 1.21493 * 119.99871 * 185.02552 * 20 19 18 22 22 O 1.34727 * 119.99947 * 5.03651 * 20 19 18 23 23 C 1.45195 * 116.99915 * 179.97438 * 22 20 19 24 24 C 1.53000 * 109.47155 * 179.97438 * 23 22 20 25 25 H 4.40644 * 5.51442 * 179.97438 * 4 1 2 26 26 H 1.09001 * 109.47214 * 75.26336 * 3 2 1 27 27 H 1.08997 * 109.47285 * 315.26424 * 3 2 1 28 28 H 0.97000 * 120.00681 * 180.02562 * 8 7 5 29 29 H 1.09000 * 109.47251 * 328.94225 * 13 4 3 30 30 H 1.09002 * 109.46740 * 208.94787 * 13 4 3 31 31 H 1.07998 * 126.38000 * 0.02653 * 15 14 13 32 32 H 1.08999 * 109.47296 * 269.72888 * 17 16 15 33 33 H 1.08999 * 109.46569 * 29.72478 * 17 16 15 34 34 H 1.08998 * 109.47054 * 149.72382 * 17 16 15 35 35 H 1.09000 * 109.47324 * 299.99214 * 23 22 20 36 36 H 1.09000 * 109.47393 * 59.99921 * 23 22 20 37 37 H 1.08995 * 109.47546 * 179.97438 * 24 23 22 38 38 H 1.08999 * 109.47226 * 299.99876 * 24 23 22 39 39 H 1.09001 * 109.47498 * 59.99514 * 24 23 22 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.1740 0.0000 0.0000 3 6 2.6460 0.0007 0.0000 4 7 3.1337 1.3334 0.3636 5 6 3.4803 2.2263 -0.6152 6 1 4.1174 3.0657 -0.3792 7 6 3.0125 2.0524 -1.9104 8 7 1.9772 1.2720 -2.1371 9 14 3.8524 2.9261 -3.3320 10 1 5.2736 2.5014 -3.4036 11 1 3.1671 2.5766 -4.6022 12 1 3.7846 4.3943 -3.1201 13 6 3.2507 1.7109 1.7743 14 6 4.6140 1.3236 2.2866 15 6 5.6316 0.7809 1.5782 16 7 6.6598 0.5941 2.4335 17 6 7.9586 0.0220 2.0701 18 7 6.3372 0.9951 3.6106 19 6 5.1020 1.4563 3.6087 20 6 4.3676 2.0057 4.7650 21 8 3.1982 2.3148 4.6508 22 8 4.9941 2.1646 5.9471 23 6 4.2102 2.7108 7.0404 24 6 5.0842 2.8165 8.2917 25 1 -1.0502 -0.0003 -0.0003 26 1 3.0095 -0.2606 -0.9939 27 1 3.0097 -0.7292 0.7233 28 1 1.6505 1.1502 -3.0423 29 1 2.4848 1.1949 2.3533 30 1 3.1175 2.7881 1.8744 31 1 5.6223 0.5401 0.5254 32 1 7.9295 -1.0594 2.2033 33 1 8.1788 0.2539 1.0280 34 1 8.7338 0.4461 2.7083 35 1 3.8456 3.7009 6.7668 36 1 3.3635 2.0551 7.2435 37 1 4.4959 3.2270 9.1123 38 1 5.4485 1.8263 8.5651 39 1 5.9313 3.4720 8.0889 RHF calculation, no. of doubly occupied orbitals= 54 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001352097381.mol2 39 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 06:16:29 Heat of formation + Delta-G solvation = 64.855749 kcal Electronic energy + Delta-G solvation = -23070.208940 eV Core-core repulsion = 19596.324992 eV Total energy + Delta-G solvation = -3473.883948 eV No. of doubly occupied orbitals = 54 Molecular weight (most abundant/longest-lived isotopes) = 291.137 amu Computer time = 0.83 seconds Orbital eigenvalues (eV) -43.62413 -41.19434 -38.08292 -37.59234 -34.72333 -33.51976 -33.35824 -32.50576 -31.31728 -28.96748 -28.04315 -27.48759 -24.98646 -23.68325 -23.29380 -21.44550 -21.17777 -19.30811 -18.76243 -18.27583 -17.86524 -17.73232 -16.94818 -16.93569 -16.80329 -15.54057 -15.36970 -15.06166 -14.95820 -14.65886 -14.16473 -13.90408 -13.77386 -13.55266 -13.31517 -13.21742 -13.12945 -12.90346 -12.85471 -12.56544 -12.50057 -12.22976 -12.02481 -11.96766 -11.71883 -11.51780 -10.80511 -10.71933 -10.28134 -10.18504 -9.65550 -8.93106 -7.77258 -5.24635 0.27040 1.20003 1.38409 1.53201 1.54108 1.60996 1.89601 2.09529 2.33766 2.55838 2.63829 3.31602 3.37336 3.69095 4.02052 4.03033 4.11535 4.14559 4.17072 4.36860 4.45056 4.47169 4.60688 4.72977 4.75189 4.77141 4.85806 4.94310 5.01234 5.10069 5.21623 5.32050 5.37743 5.44364 5.67118 5.72590 5.91562 6.33344 6.61410 6.96090 7.15017 7.38377 7.84320 8.30400 9.23934 Molecular weight = 291.14amu Principal moments of inertia in cm(-1) A = 0.015990 B = 0.004666 C = 0.004137 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1750.724434 B = 5999.441496 C = 6765.830604 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.301 4.301 2 C -0.132 4.132 3 C 0.276 3.724 4 N -0.591 5.591 5 C -0.265 4.265 6 H 0.071 0.929 7 C -0.040 4.040 8 N -0.916 5.916 9 Si 0.963 3.037 10 H -0.270 1.270 11 H -0.300 1.300 12 H -0.288 1.288 13 C 0.231 3.769 14 C -0.164 4.164 15 C 0.014 3.986 16 N -0.271 5.271 17 C 0.076 3.924 18 N -0.246 5.246 19 C -0.039 4.039 20 C 0.557 3.443 21 O -0.523 6.523 22 O -0.350 6.350 23 C 0.050 3.950 24 C -0.142 4.142 25 H 0.220 0.780 26 H 0.081 0.919 27 H 0.055 0.945 28 H 0.247 0.753 29 H 0.043 0.957 30 H 0.043 0.957 31 H 0.197 0.803 32 H 0.105 0.895 33 H 0.119 0.881 34 H 0.109 0.891 35 H 0.070 0.930 36 H 0.071 0.929 37 H 0.105 0.895 38 H 0.068 0.932 39 H 0.067 0.933 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 12.132 -2.783 13.282 18.203 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.320 4.320 2 C -0.134 4.134 3 C 0.151 3.849 4 N -0.311 5.311 5 C -0.394 4.394 6 H 0.089 0.911 7 C -0.236 4.236 8 N -0.560 5.560 9 Si 0.792 3.208 10 H -0.195 1.195 11 H -0.227 1.227 12 H -0.214 1.214 13 C 0.104 3.896 14 C -0.176 4.176 15 C -0.129 4.129 16 N -0.061 5.061 17 C -0.062 4.062 18 N -0.085 5.085 19 C -0.195 4.195 20 C 0.401 3.599 21 O -0.411 6.411 22 O -0.266 6.266 23 C -0.024 4.024 24 C -0.199 4.199 25 H 0.236 0.764 26 H 0.099 0.901 27 H 0.073 0.927 28 H 0.057 0.943 29 H 0.061 0.939 30 H 0.061 0.939 31 H 0.214 0.786 32 H 0.124 0.876 33 H 0.138 0.862 34 H 0.128 0.872 35 H 0.088 0.912 36 H 0.089 0.911 37 H 0.123 0.877 38 H 0.087 0.913 39 H 0.086 0.914 Dipole moment (debyes) X Y Z Total from point charges 12.779 -2.922 13.807 19.039 hybrid contribution -1.249 0.829 -1.525 2.139 sum 11.530 -2.093 12.282 16.975 Atomic orbital electron populations 1.25008 0.96458 1.04001 1.06539 1.24831 0.96412 0.96924 0.95279 1.17727 0.82507 0.85564 0.99098 1.44133 1.74909 1.11724 1.00378 1.19357 1.23986 1.07404 0.88694 0.91091 1.25589 0.96958 1.00737 1.00330 1.70254 1.23505 1.42666 1.19596 0.85418 0.78620 0.77949 0.78790 1.19520 1.22667 1.21411 1.18829 0.89493 0.97171 0.84133 1.21394 0.99913 1.05186 0.91135 1.22769 0.87003 1.04528 0.98552 1.45903 1.14194 1.41863 1.04157 1.22668 0.78250 1.00692 1.04605 1.73494 1.14232 1.14436 1.06376 1.20605 0.93475 1.12398 0.93037 1.19671 0.84044 0.74297 0.81887 1.90849 1.17307 1.48467 1.84455 1.86621 1.44676 1.75808 1.19495 1.23407 0.95079 0.98900 0.84967 1.21810 1.00416 1.03711 0.93976 0.76365 0.90146 0.92717 0.94312 0.93881 0.93884 0.78648 0.87639 0.86229 0.87221 0.91204 0.91074 0.87695 0.91251 0.91364 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.30 -14.14 19.25 74.32 1.43 -12.71 16 2 C -0.13 -6.61 11.53 31.12 0.36 -6.25 16 3 C 0.28 13.08 5.41 84.57 0.46 13.54 16 4 N -0.59 -28.80 1.82 -716.91 -1.30 -30.11 16 5 C -0.27 -13.82 9.66 84.03 0.81 -13.01 16 6 H 0.07 3.68 7.89 -2.91 -0.02 3.66 16 7 C -0.04 -2.10 4.94 84.86 0.42 -1.68 16 8 N -0.92 -51.47 9.35 21.65 0.20 -51.27 16 9 Si 0.96 43.01 29.59 68.60 2.03 45.04 16 10 H -0.27 -11.28 7.11 99.48 0.71 -10.57 16 11 H -0.30 -13.73 7.11 99.48 0.71 -13.02 16 12 H -0.29 -12.91 7.11 99.48 0.71 -12.21 16 13 C 0.23 10.53 5.20 85.63 0.45 10.97 16 14 C -0.16 -6.46 6.20 -19.72 -0.12 -6.58 16 15 C 0.01 0.46 10.79 83.53 0.90 1.36 16 16 N -0.27 -7.42 3.70 -369.47 -1.37 -8.79 16 17 C 0.08 1.08 11.31 127.77 1.44 2.53 16 18 N -0.25 -8.01 11.99 -48.22 -0.58 -8.58 16 19 C -0.04 -1.47 7.16 42.43 0.30 -1.17 16 20 C 0.56 20.56 7.97 70.29 0.56 21.12 16 21 O -0.52 -21.56 15.67 19.86 0.31 -21.25 16 22 O -0.35 -10.83 10.23 -56.37 -0.58 -11.41 16 23 C 0.05 1.15 6.19 71.98 0.45 1.59 16 24 C -0.14 -2.15 10.29 71.98 0.74 -1.41 16 25 H 0.22 8.43 7.80 -4.41 -0.03 8.39 16 26 H 0.08 4.05 6.45 -2.39 -0.02 4.04 16 27 H 0.05 2.31 8.12 -2.39 -0.02 2.29 16 28 H 0.25 13.79 8.31 -92.71 -0.77 13.02 16 29 H 0.04 2.05 7.96 -2.39 -0.02 2.03 16 30 H 0.04 2.10 8.03 -2.39 -0.02 2.08 16 31 H 0.20 6.30 7.88 -2.91 -0.02 6.28 16 32 H 0.11 1.11 8.14 -2.39 -0.02 1.09 16 33 H 0.12 1.22 8.13 -2.39 -0.02 1.21 16 34 H 0.11 1.25 8.14 -2.39 -0.02 1.23 16 35 H 0.07 1.60 8.14 -2.39 -0.02 1.59 16 36 H 0.07 1.61 8.14 -2.39 -0.02 1.59 16 37 H 0.10 1.04 8.14 -2.39 -0.02 1.02 16 38 H 0.07 1.02 8.14 -2.39 -0.02 1.00 16 39 H 0.07 1.02 8.14 -2.39 -0.02 1.00 16 Total: -1.00 -70.31 347.13 7.96 -62.35 By element: Atomic # 1 Polarization: 14.67 SS G_CDS: 1.04 Total: 15.71 kcal Atomic # 6 Polarization: 0.11 SS G_CDS: 8.20 Total: 8.31 kcal Atomic # 7 Polarization: -95.70 SS G_CDS: -3.05 Total: -98.75 kcal Atomic # 8 Polarization: -32.40 SS G_CDS: -0.27 Total: -32.66 kcal Atomic # 14 Polarization: 43.01 SS G_CDS: 2.03 Total: 45.04 kcal Total: -70.31 7.96 -62.35 kcal The number of atoms in the molecule is 39 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001352097381.mol2 39 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 127.204 kcal (2) G-P(sol) polarization free energy of solvation -70.306 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 56.899 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 7.957 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -62.349 kcal (6) G-S(sol) free energy of system = (1) + (5) 64.856 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.83 seconds