Wall clock time and date at job start Tue Mar 31 2020 06:26:32 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46501 * 1 3 3 C 1.34953 * 126.03725 * 2 1 4 4 C 1.35312 * 107.74266 * 180.20624 * 3 2 1 5 5 C 1.50703 * 126.03521 * 179.76875 * 4 3 2 6 6 H 1.08997 * 115.55108 * 334.27457 * 5 4 3 7 7 C 1.53005 * 117.49927 * 188.60999 * 5 4 3 8 8 C 1.53000 * 117.49806 * 119.98502 * 5 4 3 9 9 H 1.08989 * 117.50029 * 0.02562 * 8 5 4 10 10 C 1.50697 * 117.49718 * 214.97660 * 8 5 4 11 11 O 1.21275 * 120.00329 * 0.02562 * 10 8 5 12 12 N 1.34787 * 119.99950 * 180.02562 * 10 8 5 13 13 C 1.47062 * 136.05199 * 359.63270 * 12 10 8 14 14 C 1.53761 * 87.88950 * 152.96172 * 13 12 10 15 15 O 1.42899 * 114.39517 * 272.68099 * 14 13 12 16 16 C 1.50692 * 114.26789 * 139.78777 * 14 13 12 17 17 H 1.08001 * 119.99818 * 266.47637 * 16 14 13 18 18 C 1.37871 * 120.00073 * 86.48258 * 16 14 13 19 19 N 1.31512 * 120.00008 * 359.97438 * 18 16 14 20 20 Si 1.86798 * 120.00109 * 179.97438 * 18 16 14 21 21 H 1.48496 * 109.47304 * 59.99705 * 20 18 16 22 22 H 1.48500 * 109.47435 * 179.97438 * 20 18 16 23 23 H 1.48506 * 109.47112 * 299.99637 * 20 18 16 24 24 C 1.47060 * 136.05879 * 179.97438 * 12 10 8 25 25 C 1.39863 * 107.92527 * 359.64076 * 4 3 2 26 26 N 1.30837 * 108.19940 * 0.36269 * 25 4 3 27 27 H 1.08999 * 109.47001 * 90.00027 * 1 2 3 28 28 H 1.09001 * 109.47118 * 210.00454 * 1 2 3 29 29 H 1.08997 * 109.46734 * 329.99965 * 1 2 3 30 30 H 1.08002 * 126.12372 * 359.93597 * 3 2 1 31 31 H 1.08998 * 117.49750 * 359.97438 * 7 5 4 32 32 H 1.08990 * 117.50023 * 144.99813 * 7 5 4 33 33 H 1.09000 * 113.47156 * 267.69091 * 13 12 10 34 34 H 1.09008 * 113.47250 * 38.13540 * 13 12 10 35 35 H 0.96708 * 113.99586 * 273.57993 * 15 14 13 36 36 H 0.96999 * 120.00192 * 179.97438 * 19 18 16 37 37 H 1.08994 * 113.46644 * 321.86766 * 24 12 10 38 38 H 1.09004 * 113.46509 * 92.30612 * 24 12 10 39 39 H 1.08001 * 125.90034 * 180.14354 * 25 4 3 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4650 0.0000 0.0000 3 6 2.2590 1.0913 0.0000 4 6 3.5437 0.6665 -0.0046 5 6 4.7679 1.5453 -0.0113 6 1 4.6315 2.5384 -0.4392 7 6 6.1235 0.8668 -0.2189 8 6 5.7423 1.4082 1.1604 9 1 5.4980 0.6823 1.9358 10 6 6.4400 2.6569 1.6349 11 8 6.2195 3.7184 1.0915 12 7 7.3091 2.5939 2.6632 13 6 7.8212 1.5415 3.5537 14 6 9.0996 2.3803 3.7162 15 8 10.0953 2.1376 2.7203 16 6 9.6520 2.4022 5.1180 17 1 9.3748 3.1964 5.7953 18 6 10.5114 1.4084 5.5359 19 7 10.8487 0.4410 4.7113 20 14 11.1967 1.4359 7.2734 21 1 10.0778 1.3758 8.2479 22 1 12.0890 0.2656 7.4723 23 1 11.9678 2.6879 7.4817 24 6 8.1579 3.5482 3.3923 25 6 3.5347 -0.7321 0.0008 26 7 2.2892 -1.1327 0.0005 27 1 -0.3633 0.0000 -1.0277 28 1 -0.3633 -0.8899 0.5139 29 1 -0.3633 0.8900 0.5138 30 1 1.9281 2.1194 -0.0010 31 1 6.1298 -0.2152 -0.3504 32 1 6.8787 1.4135 -0.7834 33 1 7.2502 1.4376 4.4763 34 1 7.9864 0.5890 3.0500 35 1 10.6871 1.4012 2.9272 36 1 11.4536 -0.2580 5.0052 37 1 8.6097 4.3050 2.7511 38 1 7.6755 3.9737 4.2723 39 1 4.4055 -1.3710 0.0012 RHF calculation, no. of doubly occupied orbitals= 54 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001447925453.mol2 39 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 06:26:32 Heat of formation + Delta-G solvation = 63.190245 kcal Electronic energy + Delta-G solvation = -22570.395226 eV Core-core repulsion = 19096.439057 eV Total energy + Delta-G solvation = -3473.956169 eV No. of doubly occupied orbitals = 54 Molecular weight (most abundant/longest-lived isotopes) = 291.137 amu Computer time = 0.47 seconds Orbital eigenvalues (eV) -41.36109 -39.63927 -37.96589 -35.96263 -33.96965 -33.15160 -32.17709 -30.28165 -28.84152 -26.97837 -25.65781 -25.06013 -23.06605 -22.91009 -21.10181 -20.09110 -19.63264 -18.12554 -17.49637 -17.03937 -16.29774 -15.64321 -15.44658 -15.04389 -14.75911 -14.51755 -14.13752 -14.10468 -13.53187 -13.11536 -13.01083 -12.83781 -12.72748 -12.40721 -12.14775 -11.85478 -11.76319 -11.54004 -11.04526 -11.00899 -10.83532 -10.53456 -10.48065 -10.27832 -10.23797 -9.58689 -9.53991 -9.17351 -8.76712 -8.37943 -8.27284 -7.80428 -6.39241 -4.49589 1.73787 2.36821 2.56478 3.13153 3.16651 3.22589 3.24876 3.59220 4.17149 4.20015 4.36425 4.72729 4.80533 4.85175 4.86831 5.00210 5.09276 5.11370 5.15193 5.36676 5.43255 5.57333 5.61637 5.85226 5.94998 6.00919 6.14739 6.25058 6.36677 6.43974 6.52291 6.55146 6.69451 6.72584 6.84552 7.13286 7.56210 7.63872 7.82095 8.52432 8.57465 8.83518 9.21709 9.50960 10.67347 Molecular weight = 291.14amu Principal moments of inertia in cm(-1) A = 0.025275 B = 0.003201 C = 0.003068 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1107.531906 B = 8745.857260 C = 9124.176197 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.103 3.897 2 N -0.381 5.381 3 C 0.062 3.938 4 C -0.200 4.200 5 C -0.045 4.045 6 H 0.121 0.879 7 C -0.141 4.141 8 C -0.169 4.169 9 H 0.118 0.882 10 C 0.564 3.436 11 O -0.567 6.567 12 N -0.630 5.630 13 C 0.072 3.928 14 C 0.241 3.759 15 O -0.571 6.571 16 C -0.534 4.534 17 H 0.072 0.928 18 C 0.072 3.928 19 N -0.898 5.898 20 Si 0.909 3.091 21 H -0.274 1.274 22 H -0.284 1.284 23 H -0.273 1.273 24 C 0.106 3.894 25 C 0.056 3.944 26 N -0.300 5.300 27 H 0.073 0.927 28 H 0.087 0.913 29 H 0.086 0.914 30 H 0.175 0.825 31 H 0.102 0.898 32 H 0.102 0.898 33 H 0.079 0.921 34 H 0.065 0.935 35 H 0.394 0.606 36 H 0.274 0.726 37 H 0.065 0.935 38 H 0.084 0.916 39 H 0.183 0.817 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -15.146 -2.605 -6.842 16.823 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.038 4.038 2 N -0.163 5.163 3 C -0.084 4.084 4 C -0.212 4.212 5 C -0.065 4.065 6 H 0.139 0.861 7 C -0.179 4.179 8 C -0.190 4.190 9 H 0.136 0.864 10 C 0.354 3.646 11 O -0.448 6.448 12 N -0.362 5.362 13 C -0.051 4.051 14 C 0.199 3.801 15 O -0.384 6.384 16 C -0.572 4.572 17 H 0.090 0.910 18 C -0.130 4.130 19 N -0.538 5.538 20 Si 0.736 3.264 21 H -0.199 1.199 22 H -0.210 1.210 23 H -0.198 1.198 24 C -0.016 4.016 25 C -0.130 4.130 26 N -0.121 5.121 27 H 0.091 0.909 28 H 0.106 0.894 29 H 0.105 0.895 30 H 0.192 0.808 31 H 0.120 0.880 32 H 0.121 0.879 33 H 0.098 0.902 34 H 0.084 0.916 35 H 0.250 0.750 36 H 0.085 0.915 37 H 0.084 0.916 38 H 0.102 0.898 39 H 0.200 0.800 Dipole moment (debyes) X Y Z Total from point charges -16.547 -2.735 -7.595 18.411 hybrid contribution 1.048 0.042 1.340 1.701 sum -15.499 -2.693 -6.255 16.929 Atomic orbital electron populations 1.21828 0.74299 1.04450 1.03232 1.48427 1.06570 1.03883 1.57415 1.22264 0.90697 0.93392 1.02037 1.19335 0.93154 0.93161 1.15512 1.20209 0.86900 0.99166 1.00244 0.86076 1.22979 0.97777 1.00742 0.96397 1.22237 1.04165 0.99145 0.93456 0.86397 1.19041 0.77503 0.88828 0.79225 1.90610 1.64926 1.31201 1.58099 1.49624 1.40973 1.15261 1.30330 1.24245 0.96746 0.93134 0.90983 1.19559 0.84291 0.88879 0.87379 1.86046 1.47027 1.58237 1.47052 1.21398 1.28650 1.10641 0.96535 0.91022 1.25074 0.95068 0.94306 0.98598 1.69255 1.35277 1.13102 1.36204 0.86369 0.78991 0.77836 0.83204 1.19898 1.20990 1.19837 1.23322 0.89168 0.95162 0.93947 1.23792 0.95151 0.94569 0.99537 1.77344 1.01636 1.08271 1.24824 0.90859 0.89383 0.89504 0.80782 0.87980 0.87936 0.90243 0.91649 0.74999 0.91525 0.91609 0.89808 0.80004 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.10 0.64 11.47 59.85 0.69 1.33 16 2 N -0.38 -4.16 4.01 -68.16 -0.27 -4.43 16 3 C 0.06 0.68 11.40 -17.22 -0.20 0.49 16 4 C -0.20 -2.53 5.76 -105.06 -0.61 -3.14 16 5 C -0.05 -0.63 5.76 -91.77 -0.53 -1.16 16 6 H 0.12 1.77 7.67 -51.93 -0.40 1.37 16 7 C -0.14 -1.95 9.73 -26.72 -0.26 -2.21 16 8 C -0.17 -2.73 5.72 -91.77 -0.53 -3.25 16 9 H 0.12 1.83 8.14 -51.93 -0.42 1.41 16 10 C 0.56 11.60 7.86 -10.98 -0.09 11.51 16 11 O -0.57 -13.05 17.03 5.56 0.09 -12.96 16 12 N -0.63 -13.51 3.69 -185.05 -0.68 -14.19 16 13 C 0.07 1.55 7.86 -8.37 -0.07 1.49 16 14 C 0.24 5.78 1.58 -91.13 -0.14 5.64 16 15 O -0.57 -14.73 13.55 -35.23 -0.48 -15.21 16 16 C -0.53 -13.31 8.70 -34.45 -0.30 -13.61 16 17 H 0.07 1.73 7.81 -52.49 -0.41 1.32 16 18 C 0.07 1.78 5.39 -17.82 -0.10 1.68 16 19 N -0.90 -22.60 11.01 55.43 0.61 -21.99 16 20 Si 0.91 19.30 29.54 -169.99 -5.02 14.28 16 21 H -0.27 -5.75 7.11 56.52 0.40 -5.35 16 22 H -0.28 -6.02 7.11 56.52 0.40 -5.62 16 23 H -0.27 -5.82 7.11 56.52 0.40 -5.42 16 24 C 0.11 2.35 8.02 -8.52 -0.07 2.28 16 25 C 0.06 0.70 11.35 -17.37 -0.20 0.50 16 26 N -0.30 -3.96 12.58 30.62 0.39 -3.58 16 27 H 0.07 0.36 8.14 -51.93 -0.42 -0.06 16 28 H 0.09 0.51 8.14 -51.93 -0.42 0.09 16 29 H 0.09 0.35 8.14 -51.93 -0.42 -0.08 16 30 H 0.18 1.42 8.06 -52.49 -0.42 1.00 16 31 H 0.10 1.17 6.98 -51.93 -0.36 0.80 16 32 H 0.10 1.49 8.14 -51.93 -0.42 1.06 16 33 H 0.08 1.63 8.10 -51.93 -0.42 1.21 16 34 H 0.06 1.40 8.14 -51.92 -0.42 0.98 16 35 H 0.39 10.24 6.33 45.56 0.29 10.52 16 36 H 0.27 6.58 8.31 -40.82 -0.34 6.24 16 37 H 0.07 1.49 8.14 -51.93 -0.42 1.06 16 38 H 0.08 1.69 8.10 -51.93 -0.42 1.27 16 39 H 0.18 1.89 7.20 -52.49 -0.38 1.51 16 LS Contribution 338.88 15.07 5.11 5.11 Total: -1.00 -30.84 338.88 -7.26 -38.10 By element: Atomic # 1 Polarization: 17.94 SS G_CDS: -4.62 Total: 13.32 kcal Atomic # 6 Polarization: 3.94 SS G_CDS: -2.39 Total: 1.55 kcal Atomic # 7 Polarization: -44.23 SS G_CDS: 0.04 Total: -44.19 kcal Atomic # 8 Polarization: -27.79 SS G_CDS: -0.38 Total: -28.17 kcal Atomic # 14 Polarization: 19.30 SS G_CDS: -5.02 Total: 14.28 kcal Total LS contribution 5.11 Total: 5.11 kcal Total: -30.84 -7.26 -38.10 kcal The number of atoms in the molecule is 39 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001447925453.mol2 39 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 101.288 kcal (2) G-P(sol) polarization free energy of solvation -30.836 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 70.452 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.262 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -38.098 kcal (6) G-S(sol) free energy of system = (1) + (5) 63.190 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.47 seconds