Wall clock time and date at job start Tue Mar 31 2020 06:26:32 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46501 * 1 3 3 C 1.34953 * 126.03725 * 2 1 4 4 C 1.35312 * 107.74266 * 180.20624 * 3 2 1 5 5 C 1.50703 * 126.03521 * 179.76875 * 4 3 2 6 6 H 1.08997 * 115.55108 * 334.27457 * 5 4 3 7 7 C 1.53005 * 117.49927 * 188.60999 * 5 4 3 8 8 C 1.53000 * 117.49806 * 119.98502 * 5 4 3 9 9 H 1.08989 * 117.50029 * 0.02562 * 8 5 4 10 10 C 1.50697 * 117.49718 * 214.97660 * 8 5 4 11 11 O 1.21275 * 120.00329 * 0.02562 * 10 8 5 12 12 N 1.34787 * 119.99950 * 180.02562 * 10 8 5 13 13 C 1.47062 * 136.05199 * 359.63270 * 12 10 8 14 14 C 1.53761 * 87.88950 * 152.96172 * 13 12 10 15 15 O 1.42899 * 114.39517 * 272.68099 * 14 13 12 16 16 C 1.50692 * 114.26789 * 139.78777 * 14 13 12 17 17 H 1.08001 * 119.99818 * 266.47637 * 16 14 13 18 18 C 1.37871 * 120.00073 * 86.48258 * 16 14 13 19 19 N 1.31512 * 120.00008 * 359.97438 * 18 16 14 20 20 Si 1.86798 * 120.00109 * 179.97438 * 18 16 14 21 21 H 1.48496 * 109.47304 * 59.99705 * 20 18 16 22 22 H 1.48500 * 109.47435 * 179.97438 * 20 18 16 23 23 H 1.48506 * 109.47112 * 299.99637 * 20 18 16 24 24 C 1.47060 * 136.05879 * 179.97438 * 12 10 8 25 25 C 1.39863 * 107.92527 * 359.64076 * 4 3 2 26 26 N 1.30837 * 108.19940 * 0.36269 * 25 4 3 27 27 H 1.08999 * 109.47001 * 90.00027 * 1 2 3 28 28 H 1.09001 * 109.47118 * 210.00454 * 1 2 3 29 29 H 1.08997 * 109.46734 * 329.99965 * 1 2 3 30 30 H 1.08002 * 126.12372 * 359.93597 * 3 2 1 31 31 H 1.08998 * 117.49750 * 359.97438 * 7 5 4 32 32 H 1.08990 * 117.50023 * 144.99813 * 7 5 4 33 33 H 1.09000 * 113.47156 * 267.69091 * 13 12 10 34 34 H 1.09008 * 113.47250 * 38.13540 * 13 12 10 35 35 H 0.96708 * 113.99586 * 273.57993 * 15 14 13 36 36 H 0.96999 * 120.00192 * 179.97438 * 19 18 16 37 37 H 1.08994 * 113.46644 * 321.86766 * 24 12 10 38 38 H 1.09004 * 113.46509 * 92.30612 * 24 12 10 39 39 H 1.08001 * 125.90034 * 180.14354 * 25 4 3 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4650 0.0000 0.0000 3 6 2.2590 1.0913 0.0000 4 6 3.5437 0.6665 -0.0046 5 6 4.7679 1.5453 -0.0113 6 1 4.6315 2.5384 -0.4392 7 6 6.1235 0.8668 -0.2189 8 6 5.7423 1.4082 1.1604 9 1 5.4980 0.6823 1.9358 10 6 6.4400 2.6569 1.6349 11 8 6.2195 3.7184 1.0915 12 7 7.3091 2.5939 2.6632 13 6 7.8212 1.5415 3.5537 14 6 9.0996 2.3803 3.7162 15 8 10.0953 2.1376 2.7203 16 6 9.6520 2.4022 5.1180 17 1 9.3748 3.1964 5.7953 18 6 10.5114 1.4084 5.5359 19 7 10.8487 0.4410 4.7113 20 14 11.1967 1.4359 7.2734 21 1 10.0778 1.3758 8.2479 22 1 12.0890 0.2656 7.4723 23 1 11.9678 2.6879 7.4817 24 6 8.1579 3.5482 3.3923 25 6 3.5347 -0.7321 0.0008 26 7 2.2892 -1.1327 0.0005 27 1 -0.3633 0.0000 -1.0277 28 1 -0.3633 -0.8899 0.5139 29 1 -0.3633 0.8900 0.5138 30 1 1.9281 2.1194 -0.0010 31 1 6.1298 -0.2152 -0.3504 32 1 6.8787 1.4135 -0.7834 33 1 7.2502 1.4376 4.4763 34 1 7.9864 0.5890 3.0500 35 1 10.6871 1.4012 2.9272 36 1 11.4536 -0.2580 5.0052 37 1 8.6097 4.3050 2.7511 38 1 7.6755 3.9737 4.2723 39 1 4.4055 -1.3710 0.0012 RHF calculation, no. of doubly occupied orbitals= 54 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001447925453.mol2 39 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 06:26:32 Heat of formation + Delta-G solvation = 42.266112 kcal Electronic energy + Delta-G solvation = -22571.302565 eV Core-core repulsion = 19096.439057 eV Total energy + Delta-G solvation = -3474.863508 eV No. of doubly occupied orbitals = 54 Molecular weight (most abundant/longest-lived isotopes) = 291.137 amu Computer time = 0.51 seconds Orbital eigenvalues (eV) -42.24440 -41.28565 -39.53988 -37.32999 -35.85813 -34.10614 -33.91234 -31.25813 -30.50543 -27.85946 -27.27829 -26.81691 -24.48576 -23.92164 -21.93126 -21.70240 -20.69033 -19.80274 -19.25250 -18.22005 -17.58993 -17.25335 -16.80477 -16.34688 -16.27863 -15.92116 -15.34594 -15.25903 -15.04610 -14.57709 -14.24857 -13.98025 -13.76776 -13.62608 -13.39777 -13.38444 -13.30204 -12.82586 -12.75443 -12.73653 -12.21449 -12.15748 -11.86181 -11.59604 -11.43513 -11.30580 -10.90747 -10.62739 -10.37960 -10.21064 -9.56222 -9.22191 -8.25817 -6.42972 0.89192 1.44523 1.49714 1.51495 1.58922 1.67647 1.72991 2.03310 2.42082 2.95872 3.05068 3.40191 3.63376 3.80620 3.89300 3.94924 4.06097 4.13656 4.22727 4.34332 4.37717 4.45438 4.47184 4.62978 4.70215 4.73153 4.79689 4.83905 4.87220 4.94510 5.07735 5.11007 5.26447 5.31007 5.63816 5.74234 5.92680 6.10429 6.62531 6.69793 6.90074 7.17619 7.31182 7.51130 8.80125 Molecular weight = 291.14amu Principal moments of inertia in cm(-1) A = 0.025275 B = 0.003201 C = 0.003068 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1107.531906 B = 8745.857260 C = 9124.176197 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.093 3.907 2 N -0.380 5.380 3 C 0.070 3.930 4 C -0.224 4.224 5 C -0.023 4.023 6 H 0.112 0.888 7 C -0.132 4.132 8 C -0.184 4.184 9 H 0.126 0.874 10 C 0.558 3.442 11 O -0.597 6.597 12 N -0.634 5.634 13 C 0.087 3.913 14 C 0.221 3.779 15 O -0.585 6.585 16 C -0.554 4.554 17 H 0.074 0.926 18 C 0.032 3.968 19 N -0.916 5.916 20 Si 0.971 3.029 21 H -0.267 1.267 22 H -0.283 1.283 23 H -0.274 1.274 24 C 0.105 3.895 25 C 0.050 3.950 26 N -0.331 5.331 27 H 0.088 0.912 28 H 0.090 0.910 29 H 0.113 0.887 30 H 0.203 0.797 31 H 0.129 0.871 32 H 0.092 0.908 33 H 0.091 0.909 34 H 0.063 0.937 35 H 0.389 0.611 36 H 0.277 0.723 37 H 0.052 0.948 38 H 0.102 0.898 39 H 0.196 0.804 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -16.626 -3.107 -6.462 18.106 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.047 4.047 2 N -0.162 5.162 3 C -0.077 4.077 4 C -0.236 4.236 5 C -0.043 4.043 6 H 0.130 0.870 7 C -0.169 4.169 8 C -0.205 4.205 9 H 0.144 0.856 10 C 0.350 3.650 11 O -0.480 6.480 12 N -0.366 5.366 13 C -0.036 4.036 14 C 0.179 3.821 15 O -0.398 6.398 16 C -0.592 4.592 17 H 0.092 0.908 18 C -0.168 4.168 19 N -0.557 5.557 20 Si 0.796 3.204 21 H -0.192 1.192 22 H -0.208 1.208 23 H -0.200 1.200 24 C -0.017 4.017 25 C -0.135 4.135 26 N -0.153 5.153 27 H 0.107 0.893 28 H 0.109 0.891 29 H 0.131 0.869 30 H 0.219 0.781 31 H 0.147 0.853 32 H 0.111 0.889 33 H 0.109 0.891 34 H 0.082 0.918 35 H 0.245 0.755 36 H 0.087 0.913 37 H 0.071 0.929 38 H 0.120 0.880 39 H 0.213 0.787 Dipole moment (debyes) X Y Z Total from point charges -18.057 -3.253 -7.221 19.718 hybrid contribution 1.445 0.247 1.167 1.874 sum -16.612 -3.006 -6.055 17.935 Atomic orbital electron populations 1.22210 0.71820 1.05926 1.04735 1.48810 1.08016 1.03233 1.56109 1.22723 0.90353 0.94607 1.00060 1.19302 0.93259 0.93149 1.17860 1.20080 0.87431 0.99009 0.97776 0.86969 1.23107 0.97623 1.02238 0.93947 1.22184 1.06011 0.97630 0.94724 0.85636 1.19825 0.76966 0.89951 0.78293 1.90582 1.65918 1.32759 1.58770 1.49700 1.41306 1.14805 1.30758 1.24025 0.95528 0.92605 0.91402 1.19825 0.84716 0.90582 0.86952 1.86030 1.47646 1.58186 1.47945 1.21632 1.29452 1.11061 0.97013 0.90763 1.25769 0.95188 0.93924 1.01951 1.69319 1.35475 1.13415 1.37510 0.85409 0.78332 0.77553 0.79149 1.19205 1.20791 1.19972 1.23331 0.89276 0.94573 0.94557 1.24046 0.95554 0.94765 0.99140 1.77295 1.02186 1.09750 1.26032 0.89317 0.89124 0.86892 0.78073 0.85315 0.88910 0.89079 0.91836 0.75483 0.91324 0.92916 0.88003 0.78727 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.09 0.91 11.47 127.77 1.47 2.37 16 2 N -0.38 -7.44 4.01 -369.56 -1.48 -8.93 16 3 C 0.07 1.37 11.40 83.54 0.95 2.33 16 4 C -0.22 -5.29 5.76 -20.15 -0.12 -5.40 16 5 C -0.02 -0.61 5.76 -11.54 -0.07 -0.68 16 6 H 0.11 3.19 7.67 -2.39 -0.02 3.17 16 7 C -0.13 -3.48 9.73 30.60 0.30 -3.18 16 8 C -0.18 -5.81 5.72 -11.54 -0.07 -5.87 16 9 H 0.13 3.75 8.14 -2.39 -0.02 3.73 16 10 C 0.56 22.89 7.86 87.65 0.69 23.58 16 11 O -0.60 -27.66 17.03 -3.02 -0.05 -27.71 16 12 N -0.63 -27.15 3.69 -858.25 -3.16 -30.32 16 13 C 0.09 3.74 7.86 83.27 0.65 4.39 16 14 C 0.22 10.63 1.58 -11.12 -0.02 10.62 16 15 O -0.59 -30.72 13.55 -148.98 -2.02 -32.74 16 16 C -0.55 -27.44 8.70 25.60 0.22 -27.22 16 17 H 0.07 3.54 7.81 -2.91 -0.02 3.52 16 18 C 0.03 1.57 5.39 84.65 0.46 2.03 16 19 N -0.92 -45.93 11.01 21.44 0.24 -45.69 16 20 Si 0.97 38.94 29.54 68.60 2.03 40.97 16 21 H -0.27 -10.38 7.11 99.48 0.71 -9.67 16 22 H -0.28 -11.17 7.11 99.48 0.71 -10.46 16 23 H -0.27 -11.00 7.11 99.48 0.71 -10.29 16 24 C 0.11 4.67 8.02 83.18 0.67 5.34 16 25 C 0.05 1.18 11.35 85.23 0.97 2.15 16 26 N -0.33 -8.24 12.58 -57.03 -0.72 -8.96 16 27 H 0.09 0.62 8.14 -2.39 -0.02 0.60 16 28 H 0.09 0.86 8.14 -2.39 -0.02 0.84 16 29 H 0.11 0.52 8.14 -2.39 -0.02 0.50 16 30 H 0.20 2.66 8.06 -2.91 -0.02 2.64 16 31 H 0.13 2.68 6.98 -2.39 -0.02 2.66 16 32 H 0.09 2.64 8.14 -2.39 -0.02 2.62 16 33 H 0.09 3.66 8.10 -2.39 -0.02 3.64 16 34 H 0.06 2.71 8.14 -2.38 -0.02 2.69 16 35 H 0.39 20.64 6.33 -74.05 -0.47 20.17 16 36 H 0.28 13.15 8.31 -92.71 -0.77 12.38 16 37 H 0.05 2.43 8.14 -2.39 -0.02 2.41 16 38 H 0.10 4.08 8.10 -2.38 -0.02 4.06 16 39 H 0.20 3.72 7.20 -2.91 -0.02 3.70 16 Total: -1.00 -65.54 338.88 1.54 -64.00 By element: Atomic # 1 Polarization: 38.32 SS G_CDS: 0.61 Total: 38.93 kcal Atomic # 6 Polarization: 4.34 SS G_CDS: 6.11 Total: 10.45 kcal Atomic # 7 Polarization: -88.76 SS G_CDS: -5.13 Total: -93.89 kcal Atomic # 8 Polarization: -58.38 SS G_CDS: -2.07 Total: -60.45 kcal Atomic # 14 Polarization: 38.94 SS G_CDS: 2.03 Total: 40.97 kcal Total: -65.54 1.54 -64.00 kcal The number of atoms in the molecule is 39 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001447925453.mol2 39 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 106.265 kcal (2) G-P(sol) polarization free energy of solvation -65.539 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 40.725 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 1.541 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -63.999 kcal (6) G-S(sol) free energy of system = (1) + (5) 42.266 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.51 seconds