Wall clock time and date at job start Tue Mar 31 2020 06:09:10 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53007 * 1 3 3 N 1.46500 * 109.47230 * 2 1 4 4 C 1.34779 * 119.99828 * 179.97438 * 3 2 1 5 5 O 1.21586 * 119.99695 * 0.02562 * 4 3 2 6 6 N 1.34770 * 119.99931 * 179.97438 * 4 3 2 7 7 C 1.46502 * 119.99934 * 180.02562 * 6 4 3 8 8 C 1.50698 * 109.47031 * 180.02562 * 7 6 4 9 9 C 1.38329 * 119.91699 * 269.72591 * 8 7 6 10 10 C 1.38066 * 120.08311 * 179.76768 * 9 8 7 11 11 C 1.39032 * 119.91388 * 0.52897 * 10 9 8 12 12 N 1.39526 * 120.08421 * 179.70119 * 11 10 9 13 13 C 1.34773 * 120.00441 * 213.41316 * 12 11 10 14 14 O 1.21741 * 119.99766 * 5.28063 * 13 12 11 15 15 C 1.46169 * 120.00224 * 185.27854 * 13 12 11 16 16 H 1.07997 * 120.00294 * 359.97438 * 15 13 12 17 17 C 1.40121 * 120.00212 * 180.02562 * 15 13 12 18 18 N 1.30641 * 119.99602 * 359.97438 * 17 15 13 19 19 Si 1.86802 * 120.00543 * 179.97438 * 17 15 13 20 20 H 1.48502 * 109.46986 * 89.99789 * 19 17 15 21 21 H 1.48494 * 109.47293 * 209.99741 * 19 17 15 22 22 H 1.48500 * 109.46970 * 329.99915 * 19 17 15 23 23 C 1.39023 * 119.83399 * 359.72491 * 11 10 9 24 24 C 1.38061 * 119.91669 * 359.97438 * 23 11 10 25 25 H 1.09003 * 109.46419 * 59.99486 * 1 2 3 26 26 H 1.08992 * 109.47476 * 179.97438 * 1 2 3 27 27 H 1.09000 * 109.46757 * 300.00383 * 1 2 3 28 28 H 1.08996 * 109.46925 * 240.00089 * 2 1 3 29 29 H 1.08999 * 109.46583 * 120.00033 * 2 1 3 30 30 H 0.96998 * 120.00133 * 0.02562 * 3 2 1 31 31 H 0.96999 * 119.99984 * 0.02562 * 6 4 3 32 32 H 1.09001 * 109.47000 * 60.00848 * 7 6 4 33 33 H 1.08993 * 109.47317 * 300.00187 * 7 6 4 34 34 H 1.08000 * 119.95773 * 359.97438 * 9 8 7 35 35 H 1.07990 * 120.04376 * 180.25583 * 10 9 8 36 36 H 0.97004 * 120.00218 * 33.41522 * 12 11 10 37 37 H 0.97003 * 119.99725 * 179.97438 * 18 17 15 38 38 H 1.08001 * 120.04522 * 179.97438 * 23 11 10 39 39 H 1.08010 * 119.95830 * 179.97438 * 24 23 11 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5301 0.0000 0.0000 3 7 2.0184 1.3812 0.0000 4 6 3.3435 1.6274 0.0005 5 8 4.1335 0.7032 0.0005 6 7 3.7928 2.8980 0.0000 7 6 5.2332 3.1657 0.0000 8 6 5.4675 4.6543 0.0000 9 6 5.5804 5.3350 -1.1990 10 6 5.7903 6.6996 -1.2030 11 6 5.8991 7.3879 0.0001 12 7 6.1175 8.7660 0.0001 13 6 6.8575 9.3310 0.9745 14 8 7.4150 8.6303 1.7994 15 6 6.9909 10.7851 1.0409 16 1 6.4968 11.4067 0.3089 17 6 7.7608 11.3725 2.0536 18 7 8.3589 10.6206 2.9388 19 14 7.9320 13.2308 2.1381 20 1 6.8455 13.7901 2.9820 21 1 9.2482 13.5803 2.7300 22 1 7.8381 13.7992 0.7694 23 6 5.7903 6.6995 1.2030 24 6 5.5743 5.3359 1.1990 25 1 -0.3632 0.5139 -0.8900 26 1 -0.3634 -1.0276 -0.0005 27 1 -0.3633 0.5139 0.8900 28 1 1.8934 -0.5138 -0.8900 29 1 1.8933 -0.5138 0.8900 30 1 1.3881 2.1185 0.0004 31 1 3.1625 3.6353 -0.0004 32 1 5.6843 2.7266 -0.8898 33 1 5.6842 2.7273 0.8901 34 1 5.5010 4.7987 -2.1331 35 1 5.8742 7.2309 -2.1394 36 1 5.7366 9.3174 -0.7011 37 1 8.8922 11.0272 3.6397 38 1 5.8748 7.2308 2.1396 39 1 5.4901 4.8004 2.1332 RHF calculation, no. of doubly occupied orbitals= 54 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001566163865.mol2 39 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 06:09:10 Heat of formation + Delta-G solvation = -51.012990 kcal Electronic energy + Delta-G solvation = -21729.924646 eV Core-core repulsion = 18251.016253 eV Total energy + Delta-G solvation = -3478.908393 eV No. of doubly occupied orbitals = 54 Molecular weight (most abundant/longest-lived isotopes) = 291.137 amu Computer time = 0.45 seconds Orbital eigenvalues (eV) -40.07744 -39.25930 -37.28843 -35.61522 -34.72223 -33.34819 -32.51373 -30.95586 -30.41991 -29.38254 -26.73389 -25.01031 -23.04586 -22.38941 -21.35342 -20.98868 -19.76208 -18.53708 -17.63096 -16.65087 -16.30508 -15.93755 -15.59164 -15.04069 -14.88607 -14.61602 -14.31679 -14.02758 -13.99756 -13.32094 -13.07979 -12.85118 -12.76231 -12.62206 -12.27379 -12.13339 -11.89635 -11.74248 -11.41504 -11.15106 -11.04149 -10.73802 -10.60592 -10.38682 -10.30457 -9.38395 -9.36054 -8.94624 -8.85931 -8.48468 -7.82383 -7.15750 -6.40531 -4.88290 1.70845 1.92023 2.76093 3.03430 3.10619 3.13949 3.17608 3.93859 4.07694 4.31964 4.49793 4.57370 4.68175 4.78754 4.99578 5.02443 5.23206 5.44748 5.48149 5.53864 5.61244 5.64211 5.68399 5.82050 5.89181 6.18758 6.28671 6.31265 6.46544 6.51275 6.73550 6.87865 7.00185 7.06335 7.22531 7.34076 7.66855 7.95131 7.98570 8.10306 8.54911 8.79174 9.13879 10.31712 10.50462 Molecular weight = 291.14amu Principal moments of inertia in cm(-1) A = 0.040530 B = 0.002412 C = 0.002404 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 690.683204 B =11605.930941 C =11646.087948 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.165 4.165 2 C 0.133 3.867 3 N -0.751 5.751 4 C 0.700 3.300 5 O -0.596 6.596 6 N -0.739 5.739 7 C 0.191 3.809 8 C -0.165 4.165 9 C -0.077 4.077 10 C -0.182 4.182 11 C 0.205 3.795 12 N -0.700 5.700 13 C 0.541 3.459 14 O -0.558 6.558 15 C -0.538 4.538 16 H 0.072 0.928 17 C 0.086 3.914 18 N -0.758 5.758 19 Si 0.914 3.086 20 H -0.270 1.270 21 H -0.277 1.277 22 H -0.264 1.264 23 C -0.133 4.133 24 C -0.077 4.077 25 H 0.061 0.939 26 H 0.073 0.927 27 H 0.061 0.939 28 H 0.064 0.936 29 H 0.064 0.936 30 H 0.396 0.604 31 H 0.397 0.603 32 H 0.068 0.932 33 H 0.069 0.931 34 H 0.115 0.885 35 H 0.118 0.882 36 H 0.394 0.606 37 H 0.273 0.727 38 H 0.139 0.861 39 H 0.116 0.884 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -14.011 -12.231 -6.764 19.790 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.223 4.223 2 C 0.009 3.991 3 N -0.408 5.408 4 C 0.400 3.600 5 O -0.474 6.474 6 N -0.394 5.394 7 C 0.068 3.932 8 C -0.167 4.167 9 C -0.096 4.096 10 C -0.203 4.203 11 C 0.105 3.895 12 N -0.343 5.343 13 C 0.348 3.652 14 O -0.440 6.440 15 C -0.574 4.574 16 H 0.090 0.910 17 C -0.136 4.136 18 N -0.386 5.386 19 Si 0.738 3.262 20 H -0.195 1.195 21 H -0.203 1.203 22 H -0.188 1.188 23 C -0.154 4.154 24 C -0.097 4.097 25 H 0.080 0.920 26 H 0.092 0.908 27 H 0.080 0.920 28 H 0.082 0.918 29 H 0.083 0.917 30 H 0.229 0.771 31 H 0.231 0.769 32 H 0.087 0.913 33 H 0.087 0.913 34 H 0.133 0.867 35 H 0.136 0.864 36 H 0.227 0.773 37 H 0.083 0.917 38 H 0.157 0.843 39 H 0.134 0.866 Dipole moment (debyes) X Y Z Total from point charges -12.690 -13.511 -5.947 19.466 hybrid contribution -0.612 1.969 -0.346 2.091 sum -13.301 -11.542 -6.294 18.702 Atomic orbital electron populations 1.22013 0.94581 1.03142 1.02516 1.21116 0.93676 0.82043 1.02258 1.45193 1.05520 1.08967 1.81090 1.16014 0.82453 0.83607 0.77909 1.90919 1.54938 1.43451 1.58102 1.45370 1.08664 1.05712 1.79646 1.19920 0.79189 0.91809 1.02322 1.19517 1.09355 0.94156 0.93707 1.20646 0.98689 0.93477 0.96821 1.20867 1.08472 0.94322 0.96671 1.18075 0.92587 0.85626 0.93189 1.44241 1.54606 1.03977 1.31454 1.18404 0.77815 0.89439 0.79533 1.90648 1.48978 1.63762 1.40602 1.20859 1.32763 0.89550 1.14218 0.90959 1.25758 0.93543 1.00028 0.94252 1.69983 1.21693 1.36509 1.10413 0.86268 0.78250 0.82381 0.79331 1.19542 1.20258 1.18760 1.21345 1.01221 0.94114 0.98724 1.20880 0.97960 0.93960 0.96871 0.92018 0.90785 0.91975 0.91772 0.91747 0.77087 0.76912 0.91342 0.91251 0.86679 0.86428 0.77300 0.91650 0.84321 0.86566 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.16 -0.80 10.03 37.16 0.37 -0.42 16 2 C 0.13 1.06 6.39 -4.04 -0.03 1.04 16 3 N -0.75 -6.76 5.56 -65.22 -0.36 -7.12 16 4 C 0.70 8.98 8.57 -86.92 -0.74 8.24 16 5 O -0.60 -10.15 16.34 5.29 0.09 -10.07 16 6 N -0.74 -8.45 5.55 -66.42 -0.37 -8.82 16 7 C 0.19 2.50 5.80 -5.19 -0.03 2.47 16 8 C -0.17 -2.39 5.25 -104.55 -0.55 -2.94 16 9 C -0.08 -1.10 9.69 -39.61 -0.38 -1.49 16 10 C -0.18 -2.95 9.97 -39.35 -0.39 -3.34 16 11 C 0.21 4.07 6.28 -83.77 -0.53 3.55 16 12 N -0.70 -15.13 5.32 -11.20 -0.06 -15.19 16 13 C 0.54 14.60 7.47 -13.08 -0.10 14.50 16 14 O -0.56 -17.03 12.70 5.15 0.07 -16.97 16 15 C -0.54 -14.33 9.54 -35.69 -0.34 -14.67 16 16 H 0.07 1.74 7.85 -52.49 -0.41 1.33 16 17 C 0.09 2.27 5.50 -17.35 -0.10 2.17 16 18 N -0.76 -21.64 11.82 55.55 0.66 -20.99 16 19 Si 0.91 19.11 29.56 -169.99 -5.02 14.09 16 20 H -0.27 -5.53 7.11 56.52 0.40 -5.13 16 21 H -0.28 -5.72 7.11 56.52 0.40 -5.31 16 22 H -0.26 -5.33 7.11 56.52 0.40 -4.93 16 23 C -0.13 -2.69 8.65 -39.36 -0.34 -3.03 16 24 C -0.08 -1.28 9.69 -39.61 -0.38 -1.66 16 25 H 0.06 0.27 8.14 -51.93 -0.42 -0.15 16 26 H 0.07 0.29 8.14 -51.93 -0.42 -0.13 16 27 H 0.06 0.28 8.14 -51.93 -0.42 -0.14 16 28 H 0.06 0.56 8.14 -51.93 -0.42 0.14 16 29 H 0.06 0.58 8.14 -51.93 -0.42 0.16 16 30 H 0.40 2.47 8.49 -40.82 -0.35 2.13 16 31 H 0.40 3.73 8.48 -40.82 -0.35 3.39 16 32 H 0.07 0.91 8.08 -51.93 -0.42 0.49 16 33 H 0.07 0.96 8.08 -51.93 -0.42 0.54 16 34 H 0.12 1.37 8.06 -52.49 -0.42 0.95 16 35 H 0.12 1.67 8.06 -52.49 -0.42 1.25 16 36 H 0.39 7.21 8.79 -40.82 -0.36 6.85 16 37 H 0.27 7.05 8.29 -40.82 -0.34 6.71 16 38 H 0.14 3.25 6.42 -52.49 -0.34 2.92 16 39 H 0.12 1.74 8.06 -52.48 -0.42 1.31 16 LS Contribution 340.36 15.07 5.13 5.13 Total: -1.00 -34.60 340.36 -8.57 -43.17 By element: Atomic # 1 Polarization: 17.51 SS G_CDS: -5.16 Total: 12.35 kcal Atomic # 6 Polarization: 7.95 SS G_CDS: -3.54 Total: 4.41 kcal Atomic # 7 Polarization: -51.98 SS G_CDS: -0.13 Total: -52.12 kcal Atomic # 8 Polarization: -27.18 SS G_CDS: 0.15 Total: -27.03 kcal Atomic # 14 Polarization: 19.11 SS G_CDS: -5.02 Total: 14.09 kcal Total LS contribution 5.13 Total: 5.13 kcal Total: -34.60 -8.57 -43.17 kcal The number of atoms in the molecule is 39 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001566163865.mol2 39 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -7.842 kcal (2) G-P(sol) polarization free energy of solvation -34.601 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -42.442 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.571 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -43.171 kcal (6) G-S(sol) free energy of system = (1) + (5) -51.013 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.45 seconds