Wall clock time and date at job start Tue Mar 31 2020 06:09:10 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53007 * 1 3 3 N 1.46500 * 109.47230 * 2 1 4 4 C 1.34779 * 119.99828 * 179.97438 * 3 2 1 5 5 O 1.21586 * 119.99695 * 0.02562 * 4 3 2 6 6 N 1.34770 * 119.99931 * 179.97438 * 4 3 2 7 7 C 1.46502 * 119.99934 * 180.02562 * 6 4 3 8 8 C 1.50698 * 109.47031 * 180.02562 * 7 6 4 9 9 C 1.38329 * 119.91699 * 269.72591 * 8 7 6 10 10 C 1.38066 * 120.08311 * 179.76768 * 9 8 7 11 11 C 1.39032 * 119.91388 * 0.52897 * 10 9 8 12 12 N 1.39526 * 120.08421 * 179.70119 * 11 10 9 13 13 C 1.34773 * 120.00441 * 213.41316 * 12 11 10 14 14 O 1.21741 * 119.99766 * 5.28063 * 13 12 11 15 15 C 1.46169 * 120.00224 * 185.27854 * 13 12 11 16 16 H 1.07997 * 120.00294 * 359.97438 * 15 13 12 17 17 C 1.40121 * 120.00212 * 180.02562 * 15 13 12 18 18 N 1.30641 * 119.99602 * 359.97438 * 17 15 13 19 19 Si 1.86802 * 120.00543 * 179.97438 * 17 15 13 20 20 H 1.48502 * 109.46986 * 89.99789 * 19 17 15 21 21 H 1.48494 * 109.47293 * 209.99741 * 19 17 15 22 22 H 1.48500 * 109.46970 * 329.99915 * 19 17 15 23 23 C 1.39023 * 119.83399 * 359.72491 * 11 10 9 24 24 C 1.38061 * 119.91669 * 359.97438 * 23 11 10 25 25 H 1.09003 * 109.46419 * 59.99486 * 1 2 3 26 26 H 1.08992 * 109.47476 * 179.97438 * 1 2 3 27 27 H 1.09000 * 109.46757 * 300.00383 * 1 2 3 28 28 H 1.08996 * 109.46925 * 240.00089 * 2 1 3 29 29 H 1.08999 * 109.46583 * 120.00033 * 2 1 3 30 30 H 0.96998 * 120.00133 * 0.02562 * 3 2 1 31 31 H 0.96999 * 119.99984 * 0.02562 * 6 4 3 32 32 H 1.09001 * 109.47000 * 60.00848 * 7 6 4 33 33 H 1.08993 * 109.47317 * 300.00187 * 7 6 4 34 34 H 1.08000 * 119.95773 * 359.97438 * 9 8 7 35 35 H 1.07990 * 120.04376 * 180.25583 * 10 9 8 36 36 H 0.97004 * 120.00218 * 33.41522 * 12 11 10 37 37 H 0.97003 * 119.99725 * 179.97438 * 18 17 15 38 38 H 1.08001 * 120.04522 * 179.97438 * 23 11 10 39 39 H 1.08010 * 119.95830 * 179.97438 * 24 23 11 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5301 0.0000 0.0000 3 7 2.0184 1.3812 0.0000 4 6 3.3435 1.6274 0.0005 5 8 4.1335 0.7032 0.0005 6 7 3.7928 2.8980 0.0000 7 6 5.2332 3.1657 0.0000 8 6 5.4675 4.6543 0.0000 9 6 5.5804 5.3350 -1.1990 10 6 5.7903 6.6996 -1.2030 11 6 5.8991 7.3879 0.0001 12 7 6.1175 8.7660 0.0001 13 6 6.8575 9.3310 0.9745 14 8 7.4150 8.6303 1.7994 15 6 6.9909 10.7851 1.0409 16 1 6.4968 11.4067 0.3089 17 6 7.7608 11.3725 2.0536 18 7 8.3589 10.6206 2.9388 19 14 7.9320 13.2308 2.1381 20 1 6.8455 13.7901 2.9820 21 1 9.2482 13.5803 2.7300 22 1 7.8381 13.7992 0.7694 23 6 5.7903 6.6995 1.2030 24 6 5.5743 5.3359 1.1990 25 1 -0.3632 0.5139 -0.8900 26 1 -0.3634 -1.0276 -0.0005 27 1 -0.3633 0.5139 0.8900 28 1 1.8934 -0.5138 -0.8900 29 1 1.8933 -0.5138 0.8900 30 1 1.3881 2.1185 0.0004 31 1 3.1625 3.6353 -0.0004 32 1 5.6843 2.7266 -0.8898 33 1 5.6842 2.7273 0.8901 34 1 5.5010 4.7987 -2.1331 35 1 5.8742 7.2309 -2.1394 36 1 5.7366 9.3174 -0.7011 37 1 8.8922 11.0272 3.6397 38 1 5.8748 7.2308 2.1396 39 1 5.4901 4.8004 2.1332 RHF calculation, no. of doubly occupied orbitals= 54 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001566163865.mol2 39 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 06:09:10 Heat of formation + Delta-G solvation = -77.577530 kcal Electronic energy + Delta-G solvation = -21731.076571 eV Core-core repulsion = 18251.016253 eV Total energy + Delta-G solvation = -3480.060318 eV No. of doubly occupied orbitals = 54 Molecular weight (most abundant/longest-lived isotopes) = 291.137 amu Computer time = 0.50 seconds Orbital eigenvalues (eV) -41.17442 -40.69993 -38.97207 -36.56047 -35.95944 -34.96709 -34.46681 -31.91774 -31.78553 -30.53547 -28.55721 -26.33241 -23.89215 -23.68266 -22.81090 -21.97192 -21.41844 -19.49565 -19.48040 -18.03304 -17.58975 -17.43476 -16.83370 -16.28194 -16.21223 -15.78056 -15.48845 -15.21380 -15.12897 -14.82616 -14.64664 -14.33345 -14.20688 -13.54500 -13.42702 -13.23152 -13.17474 -12.80073 -12.75050 -12.64011 -12.36605 -12.33619 -12.06693 -11.99482 -11.44612 -11.06299 -10.80276 -10.37021 -10.01117 -9.75458 -9.69782 -8.75894 -8.38260 -6.96069 0.35393 0.56430 1.39469 1.40245 1.56356 1.83504 2.16977 2.20092 2.36769 2.86390 2.98485 3.46055 3.57598 3.80335 3.98211 4.17012 4.17242 4.27669 4.40382 4.55911 4.56637 4.69365 4.84268 4.89995 4.98292 5.10451 5.16159 5.24407 5.28776 5.40682 5.46428 5.52796 5.56768 5.70622 5.79907 5.93822 6.04162 6.16120 6.40099 6.76677 7.11942 7.32696 7.59753 8.34050 8.55375 Molecular weight = 291.14amu Principal moments of inertia in cm(-1) A = 0.040530 B = 0.002412 C = 0.002404 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 690.683204 B =11605.930941 C =11646.087948 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.154 4.154 2 C 0.129 3.871 3 N -0.736 5.736 4 C 0.696 3.304 5 O -0.640 6.640 6 N -0.729 5.729 7 C 0.197 3.803 8 C -0.142 4.142 9 C -0.065 4.065 10 C -0.168 4.168 11 C 0.169 3.831 12 N -0.694 5.694 13 C 0.528 3.472 14 O -0.607 6.607 15 C -0.565 4.565 16 H 0.094 0.906 17 C 0.028 3.972 18 N -0.814 5.814 19 Si 1.001 2.999 20 H -0.261 1.261 21 H -0.274 1.274 22 H -0.247 1.247 23 C -0.160 4.160 24 C -0.077 4.077 25 H 0.070 0.930 26 H 0.085 0.915 27 H 0.067 0.933 28 H 0.055 0.945 29 H 0.051 0.949 30 H 0.411 0.589 31 H 0.409 0.591 32 H 0.076 0.924 33 H 0.061 0.939 34 H 0.155 0.845 35 H 0.144 0.856 36 H 0.408 0.592 37 H 0.277 0.723 38 H 0.092 0.908 39 H 0.126 0.874 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -15.731 -12.171 -8.972 21.820 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.212 4.212 2 C 0.005 3.995 3 N -0.393 5.393 4 C 0.396 3.604 5 O -0.523 6.523 6 N -0.385 5.385 7 C 0.074 3.926 8 C -0.144 4.144 9 C -0.084 4.084 10 C -0.189 4.189 11 C 0.071 3.929 12 N -0.338 5.338 13 C 0.335 3.665 14 O -0.492 6.492 15 C -0.601 4.601 16 H 0.112 0.888 17 C -0.188 4.188 18 N -0.443 5.443 19 Si 0.820 3.180 20 H -0.186 1.186 21 H -0.199 1.199 22 H -0.170 1.170 23 C -0.181 4.181 24 C -0.096 4.096 25 H 0.089 0.911 26 H 0.104 0.896 27 H 0.087 0.913 28 H 0.073 0.927 29 H 0.070 0.930 30 H 0.248 0.752 31 H 0.245 0.755 32 H 0.094 0.906 33 H 0.079 0.921 34 H 0.172 0.828 35 H 0.162 0.838 36 H 0.244 0.756 37 H 0.087 0.913 38 H 0.111 0.889 39 H 0.144 0.856 Dipole moment (debyes) X Y Z Total from point charges -14.505 -13.453 -8.207 21.418 hybrid contribution -0.166 1.747 0.291 1.779 sum -14.671 -11.707 -7.916 20.370 Atomic orbital electron populations 1.21953 0.91788 1.04206 1.03247 1.21233 0.95862 0.81172 1.01212 1.45124 1.04455 1.10114 1.79584 1.16196 0.83271 0.83229 0.77704 1.90893 1.56387 1.44786 1.60189 1.45126 1.08194 1.05856 1.79304 1.19774 0.80234 0.90258 1.02376 1.19634 1.07009 0.94769 0.92980 1.21052 0.96461 0.92722 0.98152 1.21119 1.06632 0.95092 0.96046 1.18340 0.95129 0.84917 0.94507 1.43743 1.54148 1.05202 1.30713 1.18737 0.77906 0.89968 0.79867 1.90607 1.51092 1.64843 1.42702 1.21418 1.33402 0.90029 1.15206 0.88799 1.27029 0.92414 1.06151 0.93225 1.70152 1.23014 1.39497 1.11594 0.84957 0.78368 0.74512 0.80136 1.18550 1.19864 1.16982 1.21108 1.04008 0.95644 0.97379 1.20945 0.97639 0.92505 0.98532 0.91088 0.89601 0.91349 0.92700 0.93041 0.75229 0.75460 0.90604 0.92106 0.82788 0.83791 0.75603 0.91252 0.88932 0.85576 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -1.10 10.03 71.98 0.72 -0.38 16 2 C 0.13 1.87 6.39 86.38 0.55 2.43 16 3 N -0.74 -11.78 5.56 -478.53 -2.66 -14.44 16 4 C 0.70 16.70 8.57 179.06 1.53 18.23 16 5 O -0.64 -21.32 16.34 -3.99 -0.07 -21.39 16 6 N -0.73 -14.97 5.55 -482.31 -2.68 -17.65 16 7 C 0.20 4.73 5.80 85.63 0.50 5.22 16 8 C -0.14 -3.81 5.25 -19.82 -0.10 -3.92 16 9 C -0.06 -1.63 9.69 22.25 0.22 -1.42 16 10 C -0.17 -5.07 9.97 22.42 0.22 -4.84 16 11 C 0.17 6.79 6.28 38.30 0.24 7.03 16 12 N -0.69 -30.72 5.32 -307.55 -1.64 -32.36 16 13 C 0.53 29.77 7.47 86.30 0.65 30.41 16 14 O -0.61 -39.39 12.70 -4.48 -0.06 -39.44 16 15 C -0.56 -30.73 9.54 24.79 0.24 -30.49 16 16 H 0.09 4.50 7.85 -2.91 -0.02 4.47 16 17 C 0.03 1.51 5.50 85.33 0.47 1.98 16 18 N -0.81 -48.42 11.82 21.85 0.26 -48.16 16 19 Si 1.00 39.29 29.56 68.60 2.03 41.32 16 20 H -0.26 -9.77 7.11 99.48 0.71 -9.06 16 21 H -0.27 -10.46 7.11 99.48 0.71 -9.75 16 22 H -0.25 -8.92 7.11 99.48 0.71 -8.21 16 23 C -0.16 -6.80 8.65 22.42 0.19 -6.60 16 24 C -0.08 -2.56 9.69 22.25 0.22 -2.34 16 25 H 0.07 0.41 8.14 -2.39 -0.02 0.39 16 26 H 0.09 0.45 8.14 -2.39 -0.02 0.43 16 27 H 0.07 0.43 8.14 -2.39 -0.02 0.41 16 28 H 0.05 0.91 8.14 -2.39 -0.02 0.89 16 29 H 0.05 0.89 8.14 -2.39 -0.02 0.87 16 30 H 0.41 4.01 8.49 -92.71 -0.79 3.22 16 31 H 0.41 6.51 8.48 -92.71 -0.79 5.73 16 32 H 0.08 1.78 8.08 -2.39 -0.02 1.76 16 33 H 0.06 1.61 8.08 -2.39 -0.02 1.59 16 34 H 0.15 2.81 8.06 -2.91 -0.02 2.79 16 35 H 0.14 3.58 8.06 -2.92 -0.02 3.55 16 36 H 0.41 14.96 8.79 -92.71 -0.82 14.14 16 37 H 0.28 14.94 8.29 -92.71 -0.77 14.17 16 38 H 0.09 4.77 6.42 -2.91 -0.02 4.75 16 39 H 0.13 3.83 8.06 -2.91 -0.02 3.81 16 Total: -1.00 -80.39 340.36 -0.45 -80.84 By element: Atomic # 1 Polarization: 37.25 SS G_CDS: -1.28 Total: 35.96 kcal Atomic # 6 Polarization: 9.67 SS G_CDS: 5.64 Total: 15.31 kcal Atomic # 7 Polarization: -105.89 SS G_CDS: -6.72 Total: -112.61 kcal Atomic # 8 Polarization: -60.71 SS G_CDS: -0.12 Total: -60.83 kcal Atomic # 14 Polarization: 39.29 SS G_CDS: 2.03 Total: 41.32 kcal Total: -80.39 -0.45 -80.84 kcal The number of atoms in the molecule is 39 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001566163865.mol2 39 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 3.267 kcal (2) G-P(sol) polarization free energy of solvation -80.390 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -77.123 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -0.455 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -80.845 kcal (6) G-S(sol) free energy of system = (1) + (5) -77.578 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.50 seconds