Wall clock time and date at job start Tue Mar 31 2020 07:13:44 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50698 * 1 3 3 N 1.30389 * 125.90146 * 2 1 4 4 N 1.39914 * 109.15885 * 179.76293 * 3 2 1 5 5 C 1.46496 * 125.76841 * 180.28503 * 4 3 2 6 6 C 1.34899 * 108.45869 * 0.39408 * 4 3 2 7 7 N 1.38661 * 126.42039 * 179.88111 * 6 4 3 8 8 C 1.34779 * 120.00186 * 330.26547 * 7 6 4 9 9 O 1.21284 * 119.99941 * 354.14404 * 8 7 6 10 10 C 1.50702 * 120.00156 * 174.14325 * 8 7 6 11 11 H 1.08993 * 109.47138 * 320.00179 * 10 8 7 12 12 N 1.46903 * 109.47016 * 199.99914 * 10 8 7 13 13 C 1.53005 * 109.46875 * 79.99978 * 10 8 7 14 14 C 1.53000 * 109.46854 * 184.99614 * 13 10 8 15 15 C 1.50695 * 109.47104 * 179.97438 * 14 13 10 16 16 H 1.08001 * 120.00284 * 0.02562 * 15 14 13 17 17 C 1.37881 * 120.00130 * 179.97438 * 15 14 13 18 18 N 1.31511 * 119.99947 * 179.97438 * 17 15 14 19 19 Si 1.86794 * 119.99861 * 0.02562 * 17 15 14 20 20 H 1.48506 * 109.47269 * 89.99680 * 19 17 15 21 21 H 1.48495 * 109.47046 * 209.99642 * 19 17 15 22 22 H 1.48506 * 109.47261 * 329.99549 * 19 17 15 23 23 C 1.39070 * 107.15126 * 359.61854 * 6 4 3 24 24 C 1.43201 * 126.48233 * 180.24140 * 23 6 4 25 25 N 3.59305 * 90.82666 * 179.97438 * 2 1 3 26 26 H 1.09004 * 109.47286 * 269.99648 * 1 2 3 27 27 H 1.09003 * 109.47345 * 30.00310 * 1 2 3 28 28 H 1.09003 * 109.46998 * 150.00120 * 1 2 3 29 29 H 1.09002 * 109.46919 * 272.71655 * 5 4 3 30 30 H 1.08998 * 109.47346 * 32.71128 * 5 4 3 31 31 H 1.08998 * 109.46971 * 152.71601 * 5 4 3 32 32 H 0.96997 * 120.00493 * 150.27174 * 7 6 4 33 33 H 1.00893 * 110.99554 * 176.04288 * 12 10 8 34 34 H 1.00895 * 111.00085 * 300.00271 * 12 10 8 35 35 H 1.09003 * 109.46843 * 65.00206 * 13 10 8 36 36 H 1.08995 * 109.47022 * 305.00093 * 13 10 8 37 37 H 1.09003 * 109.46449 * 60.00370 * 14 13 10 38 38 H 1.08994 * 109.47240 * 300.00340 * 14 13 10 39 39 H 0.96995 * 119.99945 * 180.02562 * 18 17 15 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 7 2.2716 1.0562 0.0000 4 7 3.6114 0.6531 0.0055 5 6 4.7738 1.5447 0.0131 6 6 3.6518 -0.6952 0.0001 7 7 4.7918 -1.4847 0.0006 8 6 5.9247 -1.0328 -0.5728 9 8 5.9197 0.0164 -1.1812 10 6 7.1977 -1.8311 -0.4580 11 1 7.2769 -2.2462 0.5467 12 7 8.3492 -0.9570 -0.7188 13 6 7.1797 -2.9695 -1.4802 14 6 8.4125 -3.8535 -1.2808 15 6 8.3945 -4.9750 -2.2871 16 1 7.5850 -5.0497 -2.9981 17 6 9.4120 -5.9054 -2.3008 18 7 9.3960 -6.8844 -3.1788 19 14 10.8125 -5.7759 -1.0716 20 1 10.4668 -6.5388 0.1548 21 1 12.0503 -6.3363 -1.6707 22 1 11.0337 -4.3498 -0.7215 23 6 2.3359 -1.1450 0.0000 24 6 1.9025 -2.5099 0.0001 25 7 1.5588 -3.5927 0.0016 26 1 -0.3634 -0.0001 1.0277 27 1 -0.3634 0.8900 -0.5139 28 1 -0.3633 -0.8900 -0.5138 29 1 5.0373 1.8069 -1.0116 30 1 4.5332 2.4507 0.5694 31 1 5.6156 1.0400 0.4870 32 1 4.7739 -2.3622 0.4134 33 1 9.2174 -1.4531 -0.5848 34 1 8.2990 -0.5595 -1.6448 35 1 7.1902 -2.5533 -2.4876 36 1 6.2783 -3.5667 -1.3431 37 1 8.4019 -4.2695 -0.2733 38 1 9.3139 -3.2562 -1.4178 39 1 10.1116 -7.5391 -3.1882 RHF calculation, no. of doubly occupied orbitals= 54 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001579891277.mol2 39 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 07:13:44 Heat of formation + Delta-G solvation = 73.313366 kcal Electronic energy + Delta-G solvation = -22757.067576 eV Core-core repulsion = 19315.843129 eV Total energy + Delta-G solvation = -3441.224447 eV No. of doubly occupied orbitals = 54 Molecular weight (most abundant/longest-lived isotopes) = 291.144 amu Computer time = 0.45 seconds Orbital eigenvalues (eV) -42.11474 -40.07405 -36.51920 -36.14960 -35.44040 -33.96231 -32.92912 -30.52242 -30.32497 -29.63861 -27.24166 -26.14247 -24.48184 -22.27805 -21.71651 -20.41016 -19.75129 -18.88490 -17.96736 -17.25721 -16.80841 -16.35003 -15.68918 -15.15009 -14.91512 -14.63247 -14.33958 -13.86405 -13.76281 -13.68380 -13.38900 -13.31921 -13.15177 -12.86866 -12.79503 -12.58494 -12.55841 -12.25637 -12.04537 -11.59746 -11.25581 -11.10898 -10.84283 -10.47865 -10.24885 -9.99201 -9.82274 -9.41940 -9.20747 -8.71660 -8.65652 -8.54938 -6.18972 -4.19824 1.05594 1.80320 1.87535 2.27336 2.58716 2.63514 3.18494 3.25820 3.27628 3.46091 3.85804 4.29523 4.29883 4.49798 4.53062 4.70436 4.98701 5.05298 5.09192 5.14948 5.17680 5.27729 5.31824 5.36833 5.53283 5.59255 5.61863 5.91255 6.09074 6.14203 6.45939 6.50699 6.72255 6.93046 7.03791 7.10243 7.34926 7.45611 7.57533 7.58839 7.65173 8.35391 8.84555 9.41149 10.94157 Molecular weight = 291.14amu Principal moments of inertia in cm(-1) A = 0.021365 B = 0.003700 C = 0.003270 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1310.225908 B = 7566.309978 C = 8561.068247 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.078 4.078 2 C 0.139 3.861 3 N -0.284 5.284 4 N -0.347 5.347 5 C 0.114 3.886 6 C 0.388 3.612 7 N -0.650 5.650 8 C 0.522 3.478 9 O -0.503 6.503 10 C 0.076 3.924 11 H 0.106 0.894 12 N -0.830 5.830 13 C -0.133 4.133 14 C -0.009 4.009 15 C -0.528 4.528 16 H 0.072 0.928 17 C 0.068 3.932 18 N -0.898 5.898 19 Si 0.882 3.118 20 H -0.276 1.276 21 H -0.287 1.287 22 H -0.266 1.266 23 C -0.221 4.221 24 C 0.290 3.710 25 N -0.430 5.430 26 H 0.085 0.915 27 H 0.082 0.918 28 H 0.080 0.920 29 H 0.099 0.901 30 H 0.080 0.920 31 H 0.089 0.911 32 H 0.431 0.569 33 H 0.357 0.643 34 H 0.350 0.650 35 H 0.065 0.935 36 H 0.065 0.935 37 H 0.015 0.985 38 H 0.017 0.983 39 H 0.265 0.735 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -11.062 16.537 9.626 22.102 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.137 4.137 2 C -0.030 4.030 3 N -0.106 5.106 4 N -0.128 5.128 5 C -0.026 4.026 6 C 0.156 3.844 7 N -0.302 5.302 8 C 0.311 3.689 9 O -0.375 6.375 10 C -0.039 4.039 11 H 0.124 0.876 12 N -0.363 5.363 13 C -0.172 4.172 14 C -0.046 4.046 15 C -0.566 4.566 16 H 0.090 0.910 17 C -0.134 4.134 18 N -0.536 5.536 19 Si 0.709 3.291 20 H -0.202 1.202 21 H -0.213 1.213 22 H -0.190 1.190 23 C -0.240 4.240 24 C -0.024 4.024 25 N -0.107 5.107 26 H 0.104 0.896 27 H 0.101 0.899 28 H 0.099 0.901 29 H 0.117 0.883 30 H 0.098 0.902 31 H 0.108 0.892 32 H 0.271 0.729 33 H 0.173 0.827 34 H 0.164 0.836 35 H 0.084 0.916 36 H 0.083 0.917 37 H 0.034 0.966 38 H 0.035 0.965 39 H 0.075 0.925 Dipole moment (debyes) X Y Z Total from point charges -11.458 17.310 9.726 22.924 hybrid contribution 1.313 -1.744 -0.064 2.183 sum -10.146 15.566 9.662 20.943 Atomic orbital electron populations 1.20304 0.85557 1.04050 1.03741 1.22166 0.96932 0.88030 0.95900 1.77250 0.84790 1.21380 1.27208 1.48411 1.06733 1.02448 1.55245 1.22316 0.82666 0.92544 1.05081 1.17949 0.87008 0.83560 0.95837 1.43125 1.08230 1.20587 1.58215 1.21397 0.84462 0.85686 0.77384 1.90762 1.85201 1.22582 1.38916 1.21529 0.87799 0.92070 1.02512 0.87620 1.58764 1.03930 1.37240 1.36329 1.22272 1.02132 0.95291 0.97531 1.19565 0.92409 0.95152 0.97510 1.21025 1.09663 1.08971 1.16928 0.91017 1.25049 0.97962 0.94917 0.95467 1.69904 1.33521 1.14607 1.35548 0.86757 0.81980 0.78770 0.81582 1.20206 1.21267 1.19017 1.15312 0.89847 0.87541 1.31300 1.24328 0.94298 0.91156 0.92656 1.81325 1.06880 1.10661 1.11828 0.89640 0.89866 0.90137 0.88302 0.90186 0.89209 0.72888 0.82681 0.83609 0.91594 0.91674 0.96641 0.96467 0.92508 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.08 -0.56 10.26 36.00 0.37 -0.19 16 2 C 0.14 1.49 7.26 -82.02 -0.60 0.89 16 3 N -0.28 -3.38 12.48 33.90 0.42 -2.96 16 4 N -0.35 -4.12 3.95 -66.69 -0.26 -4.39 16 5 C 0.11 1.16 9.21 59.84 0.55 1.71 16 6 C 0.39 4.64 7.34 -153.20 -1.12 3.51 16 7 N -0.65 -7.19 5.33 -11.04 -0.06 -7.25 16 8 C 0.52 6.52 6.03 -10.98 -0.07 6.45 16 9 O -0.50 -6.98 11.28 5.55 0.06 -6.92 16 10 C 0.08 0.98 3.21 -68.86 -0.22 0.76 16 11 H 0.11 1.20 8.14 -51.93 -0.42 0.78 16 12 N -0.83 -10.57 8.94 -5.65 -0.05 -10.62 16 13 C -0.13 -2.21 4.78 -26.73 -0.13 -2.33 16 14 C -0.01 -0.19 3.81 -27.89 -0.11 -0.29 16 15 C -0.53 -14.12 9.66 -34.44 -0.33 -14.45 16 16 H 0.07 2.11 7.99 -52.49 -0.42 1.69 16 17 C 0.07 1.89 5.47 -17.82 -0.10 1.80 16 18 N -0.90 -26.83 13.96 55.43 0.77 -26.05 16 19 Si 0.88 20.36 27.47 -169.99 -4.67 15.69 16 20 H -0.28 -6.30 7.11 56.52 0.40 -5.89 16 21 H -0.29 -6.67 7.11 56.52 0.40 -6.27 16 22 H -0.27 -5.69 6.54 56.52 0.37 -5.32 16 23 C -0.22 -2.61 6.00 -106.48 -0.64 -3.24 16 24 C 0.29 3.73 15.44 -22.47 -0.35 3.39 16 25 N -0.43 -6.38 18.54 41.84 0.78 -5.60 16 26 H 0.09 0.48 8.14 -51.93 -0.42 0.06 16 27 H 0.08 0.50 8.14 -51.93 -0.42 0.08 16 28 H 0.08 0.55 7.98 -51.93 -0.41 0.14 16 29 H 0.10 1.10 6.88 -51.93 -0.36 0.74 16 30 H 0.08 0.65 8.14 -51.93 -0.42 0.23 16 31 H 0.09 0.93 6.12 -51.93 -0.32 0.61 16 32 H 0.43 4.02 8.82 -40.82 -0.36 3.66 16 33 H 0.36 4.58 7.55 -39.30 -0.30 4.28 16 34 H 0.35 4.56 8.58 -39.29 -0.34 4.22 16 35 H 0.07 1.17 8.14 -51.93 -0.42 0.75 16 36 H 0.06 1.08 8.14 -51.93 -0.42 0.66 16 37 H 0.02 0.31 7.57 -51.93 -0.39 -0.08 16 38 H 0.02 0.35 5.92 -51.93 -0.31 0.04 16 39 H 0.27 7.41 8.31 -40.82 -0.34 7.07 16 LS Contribution 335.74 15.07 5.06 5.06 Total: -1.00 -32.00 335.74 -5.59 -37.59 By element: Atomic # 1 Polarization: 12.35 SS G_CDS: -4.91 Total: 7.44 kcal Atomic # 6 Polarization: 0.74 SS G_CDS: -2.74 Total: -2.00 kcal Atomic # 7 Polarization: -58.47 SS G_CDS: 1.60 Total: -56.87 kcal Atomic # 8 Polarization: -6.98 SS G_CDS: 0.06 Total: -6.92 kcal Atomic # 14 Polarization: 20.36 SS G_CDS: -4.67 Total: 15.69 kcal Total LS contribution 5.06 Total: 5.06 kcal Total: -32.00 -5.59 -37.59 kcal The number of atoms in the molecule is 39 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001579891277.mol2 39 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 110.908 kcal (2) G-P(sol) polarization free energy of solvation -32.005 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 78.904 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -5.590 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -37.595 kcal (6) G-S(sol) free energy of system = (1) + (5) 73.313 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.45 seconds