Wall clock time and date at job start Tue Mar 31 2020 07:13:44 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50698 * 1 3 3 N 1.30389 * 125.90146 * 2 1 4 4 N 1.39914 * 109.15885 * 179.76293 * 3 2 1 5 5 C 1.46496 * 125.76841 * 180.28503 * 4 3 2 6 6 C 1.34899 * 108.45869 * 0.39408 * 4 3 2 7 7 N 1.38661 * 126.42039 * 179.88111 * 6 4 3 8 8 C 1.34779 * 120.00186 * 330.26547 * 7 6 4 9 9 O 1.21284 * 119.99941 * 354.14404 * 8 7 6 10 10 C 1.50702 * 120.00156 * 174.14325 * 8 7 6 11 11 H 1.08993 * 109.47138 * 320.00179 * 10 8 7 12 12 N 1.46903 * 109.47016 * 199.99914 * 10 8 7 13 13 C 1.53005 * 109.46875 * 79.99978 * 10 8 7 14 14 C 1.53000 * 109.46854 * 184.99614 * 13 10 8 15 15 C 1.50695 * 109.47104 * 179.97438 * 14 13 10 16 16 H 1.08001 * 120.00284 * 0.02562 * 15 14 13 17 17 C 1.37881 * 120.00130 * 179.97438 * 15 14 13 18 18 N 1.31511 * 119.99947 * 179.97438 * 17 15 14 19 19 Si 1.86794 * 119.99861 * 0.02562 * 17 15 14 20 20 H 1.48506 * 109.47269 * 89.99680 * 19 17 15 21 21 H 1.48495 * 109.47046 * 209.99642 * 19 17 15 22 22 H 1.48506 * 109.47261 * 329.99549 * 19 17 15 23 23 C 1.39070 * 107.15126 * 359.61854 * 6 4 3 24 24 C 1.43201 * 126.48233 * 180.24140 * 23 6 4 25 25 N 3.59305 * 90.82666 * 179.97438 * 2 1 3 26 26 H 1.09004 * 109.47286 * 269.99648 * 1 2 3 27 27 H 1.09003 * 109.47345 * 30.00310 * 1 2 3 28 28 H 1.09003 * 109.46998 * 150.00120 * 1 2 3 29 29 H 1.09002 * 109.46919 * 272.71655 * 5 4 3 30 30 H 1.08998 * 109.47346 * 32.71128 * 5 4 3 31 31 H 1.08998 * 109.46971 * 152.71601 * 5 4 3 32 32 H 0.96997 * 120.00493 * 150.27174 * 7 6 4 33 33 H 1.00893 * 110.99554 * 176.04288 * 12 10 8 34 34 H 1.00895 * 111.00085 * 300.00271 * 12 10 8 35 35 H 1.09003 * 109.46843 * 65.00206 * 13 10 8 36 36 H 1.08995 * 109.47022 * 305.00093 * 13 10 8 37 37 H 1.09003 * 109.46449 * 60.00370 * 14 13 10 38 38 H 1.08994 * 109.47240 * 300.00340 * 14 13 10 39 39 H 0.96995 * 119.99945 * 180.02562 * 18 17 15 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 7 2.2716 1.0562 0.0000 4 7 3.6114 0.6531 0.0055 5 6 4.7738 1.5447 0.0131 6 6 3.6518 -0.6952 0.0001 7 7 4.7918 -1.4847 0.0006 8 6 5.9247 -1.0328 -0.5728 9 8 5.9197 0.0164 -1.1812 10 6 7.1977 -1.8311 -0.4580 11 1 7.2769 -2.2462 0.5467 12 7 8.3492 -0.9570 -0.7188 13 6 7.1797 -2.9695 -1.4802 14 6 8.4125 -3.8535 -1.2808 15 6 8.3945 -4.9750 -2.2871 16 1 7.5850 -5.0497 -2.9981 17 6 9.4120 -5.9054 -2.3008 18 7 9.3960 -6.8844 -3.1788 19 14 10.8125 -5.7759 -1.0716 20 1 10.4668 -6.5388 0.1548 21 1 12.0503 -6.3363 -1.6707 22 1 11.0337 -4.3498 -0.7215 23 6 2.3359 -1.1450 0.0000 24 6 1.9025 -2.5099 0.0001 25 7 1.5588 -3.5927 0.0016 26 1 -0.3634 -0.0001 1.0277 27 1 -0.3634 0.8900 -0.5139 28 1 -0.3633 -0.8900 -0.5138 29 1 5.0373 1.8069 -1.0116 30 1 4.5332 2.4507 0.5694 31 1 5.6156 1.0400 0.4870 32 1 4.7739 -2.3622 0.4134 33 1 9.2174 -1.4531 -0.5848 34 1 8.2990 -0.5595 -1.6448 35 1 7.1902 -2.5533 -2.4876 36 1 6.2783 -3.5667 -1.3431 37 1 8.4019 -4.2695 -0.2733 38 1 9.3139 -3.2562 -1.4178 39 1 10.1116 -7.5391 -3.1882 RHF calculation, no. of doubly occupied orbitals= 54 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001579891277.mol2 39 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 07:13:44 Heat of formation + Delta-G solvation = 49.722857 kcal Electronic energy + Delta-G solvation = -22758.090537 eV Core-core repulsion = 19315.843129 eV Total energy + Delta-G solvation = -3442.247408 eV No. of doubly occupied orbitals = 54 Molecular weight (most abundant/longest-lived isotopes) = 291.144 amu Computer time = 0.51 seconds Orbital eigenvalues (eV) -43.02526 -41.06577 -37.58974 -37.38652 -36.41866 -34.96838 -34.68381 -32.11827 -31.22135 -30.39267 -28.56323 -26.98450 -25.95685 -23.32697 -22.85198 -21.81147 -20.68649 -19.84086 -19.17849 -18.67770 -18.07462 -17.28398 -16.69391 -16.30712 -16.12089 -15.92408 -15.72466 -15.02325 -14.85763 -14.72838 -14.56613 -14.42332 -14.15556 -14.10909 -13.66386 -13.60131 -13.53520 -13.29861 -13.15089 -12.98055 -12.75536 -12.20103 -12.03824 -11.87030 -11.69909 -11.64764 -11.42977 -10.97230 -10.78355 -10.06655 -9.75484 -9.50106 -8.30570 -6.36922 0.09827 0.93245 1.01917 1.26739 1.38522 1.40492 1.51342 1.61072 1.68224 2.35800 2.46817 2.95101 3.05435 3.33334 3.60535 3.63938 3.71608 3.98539 4.09516 4.15434 4.27342 4.41639 4.50897 4.57782 4.65874 4.77968 4.81920 4.85143 4.90532 4.98460 5.34426 5.40609 5.44439 5.61688 5.63342 5.82748 6.05422 6.23371 6.44808 6.47168 6.56544 6.67602 6.72865 7.28235 8.86445 Molecular weight = 291.14amu Principal moments of inertia in cm(-1) A = 0.021365 B = 0.003700 C = 0.003270 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1310.225908 B = 7566.309978 C = 8561.068247 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.078 4.078 2 C 0.144 3.856 3 N -0.298 5.298 4 N -0.351 5.351 5 C 0.115 3.885 6 C 0.381 3.619 7 N -0.641 5.641 8 C 0.525 3.475 9 O -0.516 6.516 10 C 0.088 3.912 11 H 0.132 0.868 12 N -0.824 5.824 13 C -0.124 4.124 14 C -0.006 4.006 15 C -0.537 4.537 16 H 0.023 0.977 17 C -0.001 4.001 18 N -0.955 5.955 19 Si 0.956 3.044 20 H -0.267 1.267 21 H -0.292 1.292 22 H -0.231 1.231 23 C -0.231 4.231 24 C 0.312 3.688 25 N -0.468 5.468 26 H 0.104 0.896 27 H 0.096 0.904 28 H 0.082 0.918 29 H 0.088 0.912 30 H 0.100 0.900 31 H 0.089 0.911 32 H 0.439 0.561 33 H 0.360 0.640 34 H 0.349 0.651 35 H 0.047 0.953 36 H 0.060 0.940 37 H 0.032 0.968 38 H 0.032 0.968 39 H 0.265 0.735 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -10.717 18.408 11.923 24.410 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.137 4.137 2 C -0.025 4.025 3 N -0.121 5.121 4 N -0.132 5.132 5 C -0.024 4.024 6 C 0.149 3.851 7 N -0.293 5.293 8 C 0.314 3.686 9 O -0.388 6.388 10 C -0.027 4.027 11 H 0.149 0.851 12 N -0.357 5.357 13 C -0.164 4.164 14 C -0.044 4.044 15 C -0.575 4.575 16 H 0.041 0.959 17 C -0.197 4.197 18 N -0.596 5.596 19 Si 0.779 3.221 20 H -0.192 1.192 21 H -0.219 1.219 22 H -0.153 1.153 23 C -0.250 4.250 24 C -0.002 4.002 25 N -0.146 5.146 26 H 0.122 0.878 27 H 0.115 0.885 28 H 0.101 0.899 29 H 0.106 0.894 30 H 0.119 0.881 31 H 0.108 0.892 32 H 0.281 0.719 33 H 0.176 0.824 34 H 0.162 0.838 35 H 0.066 0.934 36 H 0.079 0.921 37 H 0.051 0.949 38 H 0.050 0.950 39 H 0.074 0.926 Dipole moment (debyes) X Y Z Total from point charges -11.134 19.211 12.040 25.258 hybrid contribution 1.108 -2.296 -0.866 2.692 sum -10.026 16.915 11.175 22.616 Atomic orbital electron populations 1.20469 0.83197 1.04826 1.05170 1.22695 0.98333 0.87128 0.94369 1.77252 0.84896 1.21897 1.28007 1.48600 1.07168 1.02503 1.54973 1.22344 0.82269 0.93106 1.04709 1.18073 0.87163 0.83918 0.95907 1.43014 1.07678 1.20795 1.57828 1.21253 0.84588 0.85477 0.77302 1.90777 1.85386 1.23235 1.39447 1.21401 0.88215 0.90707 1.02359 0.85076 1.58784 1.03890 1.36801 1.36216 1.22088 1.00228 0.96067 0.98018 1.19505 0.94790 0.93864 0.96204 1.21464 1.08001 1.10901 1.17134 0.95871 1.26145 1.01439 0.94367 0.97795 1.70093 1.34967 1.16145 1.38358 0.85579 0.77301 0.80749 0.78499 1.19228 1.21859 1.15317 1.15406 0.90194 0.87261 1.32133 1.24370 0.93246 0.91019 0.91533 1.81348 1.08151 1.11706 1.13378 0.87789 0.88537 0.89884 0.89390 0.88128 0.89239 0.71914 0.82414 0.83784 0.93395 0.92081 0.94934 0.95016 0.92576 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.08 -0.95 10.26 71.24 0.73 -0.22 16 2 C 0.14 2.84 7.26 43.54 0.32 3.15 16 3 N -0.30 -6.59 12.48 -46.67 -0.58 -7.18 16 4 N -0.35 -7.78 3.95 -364.92 -1.44 -9.22 16 5 C 0.11 2.14 9.21 127.77 1.18 3.32 16 6 C 0.38 8.56 7.34 132.40 0.97 9.53 16 7 N -0.64 -13.11 5.33 -307.23 -1.64 -14.75 16 8 C 0.52 12.15 6.03 87.66 0.53 12.67 16 9 O -0.52 -13.53 11.28 -3.04 -0.03 -13.57 16 10 C 0.09 2.06 3.21 44.17 0.14 2.20 16 11 H 0.13 2.45 8.14 -2.39 -0.02 2.43 16 12 N -0.82 -18.77 8.94 -171.79 -1.54 -20.30 16 13 C -0.12 -3.99 4.78 30.60 0.15 -3.85 16 14 C -0.01 -0.24 3.81 29.85 0.11 -0.13 16 15 C -0.54 -29.18 9.66 25.60 0.25 -28.93 16 16 H 0.02 1.43 7.99 -2.91 -0.02 1.40 16 17 C 0.00 -0.05 5.47 84.66 0.46 0.41 16 18 N -0.96 -58.94 13.96 21.45 0.30 -58.65 16 19 Si 0.96 41.04 27.47 68.60 1.88 42.92 16 20 H -0.27 -11.04 7.11 99.48 0.71 -10.33 16 21 H -0.29 -12.74 7.11 99.48 0.71 -12.04 16 22 H -0.23 -8.52 6.54 99.48 0.65 -7.87 16 23 C -0.23 -5.14 6.00 -21.07 -0.13 -5.27 16 24 C 0.31 7.76 15.44 88.33 1.36 9.13 16 25 N -0.47 -13.70 18.54 19.01 0.35 -13.35 16 26 H 0.10 0.91 8.14 -2.39 -0.02 0.89 16 27 H 0.10 0.94 8.14 -2.39 -0.02 0.92 16 28 H 0.08 0.99 7.98 -2.39 -0.02 0.97 16 29 H 0.09 1.86 6.88 -2.39 -0.02 1.84 16 30 H 0.10 1.43 8.14 -2.39 -0.02 1.41 16 31 H 0.09 1.67 6.12 -2.39 -0.01 1.65 16 32 H 0.44 7.43 8.82 -92.71 -0.82 6.61 16 33 H 0.36 7.98 7.55 -89.70 -0.68 7.31 16 34 H 0.35 8.38 8.58 -89.70 -0.77 7.61 16 35 H 0.05 1.70 8.14 -2.39 -0.02 1.68 16 36 H 0.06 1.99 8.14 -2.39 -0.02 1.97 16 37 H 0.03 1.20 7.57 -2.39 -0.02 1.18 16 38 H 0.03 1.18 5.92 -2.39 -0.01 1.16 16 39 H 0.27 15.31 8.31 -92.71 -0.77 14.54 16 Total: -1.00 -70.92 335.74 2.19 -68.74 By element: Atomic # 1 Polarization: 24.53 SS G_CDS: -1.19 Total: 23.33 kcal Atomic # 6 Polarization: -4.05 SS G_CDS: 6.07 Total: 2.02 kcal Atomic # 7 Polarization: -118.90 SS G_CDS: -4.54 Total: -123.45 kcal Atomic # 8 Polarization: -13.53 SS G_CDS: -0.03 Total: -13.57 kcal Atomic # 14 Polarization: 41.04 SS G_CDS: 1.88 Total: 42.92 kcal Total: -70.92 2.19 -68.74 kcal The number of atoms in the molecule is 39 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001579891277.mol2 39 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 118.460 kcal (2) G-P(sol) polarization free energy of solvation -70.923 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 47.537 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.186 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -68.738 kcal (6) G-S(sol) free energy of system = (1) + (5) 49.723 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.51 seconds