Wall clock time and date at job start Tue Mar 31 2020 06:23:50 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46491 * 1 3 3 C 1.34956 * 125.63962 * 2 1 4 4 C 1.50704 * 125.50239 * 0.02562 * 3 2 1 5 5 N 1.46895 * 109.46848 * 275.12025 * 4 3 2 6 6 C 1.46893 * 111.00705 * 288.06185 * 5 4 3 7 7 C 1.50702 * 109.47553 * 170.00097 * 6 5 4 8 8 H 1.08000 * 119.99480 * 0.02562 * 7 6 5 9 9 C 1.37873 * 120.00214 * 180.02562 * 7 6 5 10 10 N 1.31518 * 119.99915 * 359.97438 * 9 7 6 11 11 Si 1.86800 * 120.00272 * 179.97438 * 9 7 6 12 12 H 1.48496 * 109.47176 * 59.99829 * 11 9 7 13 13 H 1.48497 * 109.47290 * 180.02562 * 11 9 7 14 14 H 1.48503 * 109.46828 * 299.99997 * 11 9 7 15 15 C 1.46908 * 110.99695 * 164.10501 * 5 4 3 16 16 C 1.52993 * 109.47153 * 288.04084 * 15 5 4 17 17 C 1.47206 * 109.46951 * 185.24792 * 16 15 5 18 18 N 7.12406 * 58.46230 * 348.38003 * 2 1 3 19 19 C 1.35484 * 108.98775 * 179.73831 * 3 2 1 20 20 C 1.39797 * 107.84384 * 0.24977 * 19 3 2 21 21 C 1.37701 * 125.63581 * 180.16467 * 2 1 3 22 22 C 1.46490 * 126.26272 * 359.97438 * 21 2 1 23 23 O 1.21628 * 120.00331 * 180.28328 * 22 21 2 24 24 O 1.34894 * 120.00282 * 0.28848 * 22 21 2 25 25 H 1.09004 * 109.47299 * 95.60031 * 1 2 3 26 26 H 1.08998 * 109.47488 * 215.59928 * 1 2 3 27 27 H 1.09001 * 109.47201 * 335.60694 * 1 2 3 28 28 H 1.09005 * 109.47159 * 155.12589 * 4 3 2 29 29 H 1.08993 * 109.47194 * 35.12631 * 4 3 2 30 30 H 1.09001 * 109.47119 * 290.00605 * 6 5 4 31 31 H 1.09001 * 109.46927 * 49.99824 * 6 5 4 32 32 H 0.97002 * 120.00104 * 179.97438 * 10 9 7 33 33 H 1.08998 * 109.46974 * 48.04432 * 15 5 4 34 34 H 1.09002 * 109.46708 * 168.04320 * 15 5 4 35 35 H 1.09004 * 109.47689 * 305.24799 * 16 15 5 36 36 H 1.09003 * 109.46928 * 65.24937 * 16 15 5 37 37 H 1.08006 * 126.07649 * 180.20506 * 19 3 2 38 38 H 1.07994 * 126.51651 * 179.97438 * 20 19 3 39 39 H 0.96690 * 117.00494 * 179.97438 * 24 22 21 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4649 0.0000 0.0000 3 6 2.2513 1.0968 0.0000 4 6 1.7642 2.5229 0.0005 5 7 1.4885 2.9467 -1.3787 6 6 2.7359 3.1349 -2.1311 7 6 2.4178 3.3266 -3.5916 8 1 1.3914 3.3107 -3.9272 9 6 3.4369 3.5224 -4.4993 10 7 4.6868 3.5423 -4.0904 11 14 3.0426 3.7594 -6.3097 12 1 2.1795 4.9563 -6.4758 13 1 4.3038 3.9485 -7.0704 14 1 2.3310 2.5609 -6.8223 15 6 0.6709 4.1670 -1.4010 16 6 -0.7579 3.8317 -0.9688 17 6 -1.6067 5.0259 -1.1114 18 7 -2.2614 5.9474 -1.2230 19 6 3.5493 0.7086 0.0059 20 6 3.5784 -0.6891 0.0039 21 6 2.2672 -1.1191 -0.0032 22 6 1.8121 -2.5115 -0.0067 23 8 2.6242 -3.4169 -0.0041 24 8 0.4921 -2.7897 -0.0128 25 1 -0.3634 -0.1003 -1.0228 26 1 -0.3634 -0.8356 0.5982 27 1 -0.3634 0.9359 0.4244 28 1 2.5292 3.1680 0.4327 29 1 0.8516 2.5950 0.5922 30 1 3.2582 4.0144 -1.7544 31 1 3.3696 2.2564 -2.0095 32 1 5.4039 3.6797 -4.7291 33 1 1.0950 4.9010 -0.7158 34 1 0.6583 4.5774 -2.4107 35 1 -1.1490 3.0310 -1.5965 36 1 -0.7563 3.5092 0.0724 37 1 4.4088 1.3626 0.0104 38 1 4.4595 -1.3135 0.0069 39 1 0.2402 -3.7232 -0.0153 RHF calculation, no. of doubly occupied orbitals= 54 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001600913277.mol2 39 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 06:23:50 Heat of formation + Delta-G solvation = -11.255161 kcal Electronic energy + Delta-G solvation = -23047.342763 eV Core-core repulsion = 19570.158399 eV Total energy + Delta-G solvation = -3477.184364 eV No. of doubly occupied orbitals = 54 Molecular weight (most abundant/longest-lived isotopes) = 291.137 amu Computer time = 0.46 seconds Orbital eigenvalues (eV) -41.35064 -39.54817 -37.53359 -36.15227 -36.06629 -32.83734 -32.63876 -31.56586 -29.83512 -27.34866 -26.33108 -25.44553 -23.18236 -22.98386 -20.53678 -20.04883 -19.18930 -17.98808 -17.46187 -17.16562 -16.48134 -15.92128 -15.52201 -15.06085 -14.72234 -14.44342 -14.30912 -13.98480 -13.54975 -13.36115 -13.20231 -12.98581 -12.58271 -12.38170 -12.19622 -12.12969 -12.03376 -11.85051 -11.73097 -11.51684 -11.23331 -11.05242 -10.80800 -10.71436 -10.64756 -10.41524 -9.95247 -9.30217 -8.52308 -8.43387 -7.94578 -7.54347 -6.07823 -4.09460 1.38813 2.79360 2.87346 2.90237 2.94305 3.18433 3.30440 3.35658 3.37337 3.38677 4.07859 4.38916 4.82708 4.89278 4.98694 5.13766 5.20130 5.29163 5.31442 5.41769 5.51441 5.60260 5.66000 5.74978 5.79325 5.87999 6.12212 6.29048 6.41551 6.45068 6.52214 7.02772 7.09008 7.18610 7.25220 7.41328 7.65059 7.69330 7.92056 7.94441 8.03026 8.37942 8.96074 9.54847 11.02702 Molecular weight = 291.14amu Principal moments of inertia in cm(-1) A = 0.010522 B = 0.005541 C = 0.004151 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2660.555443 B = 5051.984692 C = 6743.852854 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.073 3.927 2 N -0.404 5.404 3 C 0.098 3.902 4 C 0.106 3.894 5 N -0.530 5.530 6 C 0.191 3.809 7 C -0.513 4.513 8 H 0.062 0.938 9 C 0.060 3.940 10 N -0.894 5.894 11 Si 0.894 3.106 12 H -0.278 1.278 13 H -0.288 1.288 14 H -0.277 1.277 15 C 0.064 3.936 16 C -0.029 4.029 17 C 0.217 3.783 18 N -0.452 5.452 19 C -0.201 4.201 20 C -0.088 4.088 21 C -0.068 4.068 22 C 0.559 3.441 23 O -0.518 6.518 24 O -0.521 6.521 25 H 0.081 0.919 26 H 0.087 0.913 27 H 0.084 0.916 28 H 0.059 0.941 29 H 0.073 0.927 30 H -0.006 1.006 31 H 0.047 0.953 32 H 0.262 0.738 33 H 0.034 0.966 34 H 0.099 0.901 35 H 0.115 0.885 36 H 0.097 0.903 37 H 0.146 0.854 38 H 0.147 0.853 39 H 0.409 0.591 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -8.092 -7.654 11.163 15.770 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.068 4.068 2 N -0.079 5.079 3 C -0.022 4.022 4 C -0.023 4.023 5 N -0.255 5.255 6 C 0.067 3.933 7 C -0.551 4.551 8 H 0.080 0.920 9 C -0.142 4.142 10 N -0.532 5.532 11 Si 0.722 3.278 12 H -0.203 1.203 13 H -0.213 1.213 14 H -0.202 1.202 15 C -0.066 4.066 16 C -0.069 4.069 17 C -0.101 4.101 18 N -0.129 5.129 19 C -0.225 4.225 20 C -0.114 4.114 21 C -0.177 4.177 22 C 0.405 3.595 23 O -0.408 6.408 24 O -0.333 6.333 25 H 0.099 0.901 26 H 0.106 0.894 27 H 0.102 0.898 28 H 0.077 0.923 29 H 0.091 0.909 30 H 0.012 0.988 31 H 0.065 0.935 32 H 0.072 0.928 33 H 0.052 0.948 34 H 0.118 0.882 35 H 0.133 0.867 36 H 0.116 0.884 37 H 0.164 0.836 38 H 0.164 0.836 39 H 0.268 0.732 Dipole moment (debyes) X Y Z Total from point charges -9.218 -6.513 10.697 15.550 hybrid contribution 0.473 -0.284 -0.773 0.949 sum -8.744 -6.797 9.925 14.871 Atomic orbital electron populations 1.22142 0.76522 1.03846 1.04272 1.43644 1.06529 1.04714 1.52962 1.20358 0.90296 0.88558 1.02943 1.20711 0.99794 0.88990 0.92762 1.62136 1.22571 1.31377 1.09425 1.19850 0.84308 0.96717 0.92442 1.21049 0.93238 1.49229 0.91627 0.91987 1.24931 0.94978 0.95423 0.98893 1.69928 0.98798 1.49723 1.34792 0.86629 0.77545 0.78668 0.84984 1.20331 1.21331 1.20217 1.21922 0.89332 0.91949 1.03352 1.19451 0.93622 0.89832 1.04005 1.29278 0.93505 0.94585 0.92722 1.81179 1.10895 1.11441 1.09384 1.20730 0.95807 0.94522 1.11431 1.21259 0.93915 0.95022 1.01248 1.19073 0.90824 0.83409 1.24398 1.19543 0.79679 0.88098 0.72173 1.90928 1.55017 1.46776 1.48058 1.84648 1.26700 1.35443 1.86551 0.90065 0.89410 0.89777 0.92337 0.90913 0.98807 0.93546 0.92787 0.94751 0.88240 0.86664 0.88448 0.83594 0.83561 0.73220 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.07 0.73 10.22 59.84 0.61 1.34 16 2 N -0.40 -5.57 3.15 -115.78 -0.36 -5.93 16 3 C 0.10 1.47 5.80 -82.20 -0.48 1.00 16 4 C 0.11 1.45 4.91 -4.98 -0.02 1.42 16 5 N -0.53 -8.90 4.40 -237.52 -1.04 -9.94 16 6 C 0.19 4.32 4.57 -4.98 -0.02 4.30 16 7 C -0.51 -13.11 8.28 -34.44 -0.29 -13.39 16 8 H 0.06 1.55 7.25 -52.49 -0.38 1.17 16 9 C 0.06 1.61 5.46 -17.82 -0.10 1.51 16 10 N -0.89 -25.22 13.29 55.43 0.74 -24.48 16 11 Si 0.89 20.89 29.54 -169.99 -5.02 15.87 16 12 H -0.28 -6.40 7.11 56.52 0.40 -6.00 16 13 H -0.29 -6.73 7.11 56.52 0.40 -6.33 16 14 H -0.28 -6.44 7.11 56.52 0.40 -6.04 16 15 C 0.06 0.94 4.77 -3.82 -0.02 0.92 16 16 C -0.03 -0.30 5.67 -29.52 -0.17 -0.47 16 17 C 0.22 2.82 15.43 -20.76 -0.32 2.50 16 18 N -0.45 -7.13 18.54 42.15 0.78 -6.35 16 19 C -0.20 -3.23 9.56 -39.98 -0.38 -3.61 16 20 C -0.09 -1.39 10.66 -39.09 -0.42 -1.80 16 21 C -0.07 -1.03 6.88 -82.00 -0.56 -1.60 16 22 C 0.56 7.81 8.29 34.05 0.28 8.09 16 23 O -0.52 -8.56 17.67 -19.36 -0.34 -8.90 16 24 O -0.52 -5.09 11.00 -41.02 -0.45 -5.54 16 25 H 0.08 0.83 8.14 -51.93 -0.42 0.41 16 26 H 0.09 0.75 6.52 -51.93 -0.34 0.42 16 27 H 0.08 0.64 6.88 -51.93 -0.36 0.28 16 28 H 0.06 0.81 8.05 -51.93 -0.42 0.39 16 29 H 0.07 0.74 5.32 -51.93 -0.28 0.46 16 30 H -0.01 -0.14 8.12 -51.93 -0.42 -0.57 16 31 H 0.05 1.15 6.37 -51.93 -0.33 0.82 16 32 H 0.26 7.11 8.31 -40.82 -0.34 6.77 16 33 H 0.03 0.49 8.05 -51.93 -0.42 0.07 16 34 H 0.10 1.74 6.58 -51.93 -0.34 1.40 16 35 H 0.12 1.11 8.14 -51.93 -0.42 0.69 16 36 H 0.10 0.73 6.73 -51.93 -0.35 0.38 16 37 H 0.15 2.30 8.06 -52.48 -0.42 1.88 16 38 H 0.15 2.14 8.06 -52.49 -0.42 1.72 16 39 H 0.41 2.10 9.11 45.56 0.42 2.51 16 LS Contribution 339.11 15.07 5.11 5.11 Total: -1.00 -33.00 339.11 -6.52 -39.52 By element: Atomic # 1 Polarization: 4.48 SS G_CDS: -4.04 Total: 0.43 kcal Atomic # 6 Polarization: 2.08 SS G_CDS: -1.88 Total: 0.20 kcal Atomic # 7 Polarization: -46.81 SS G_CDS: 0.11 Total: -46.70 kcal Atomic # 8 Polarization: -13.65 SS G_CDS: -0.79 Total: -14.44 kcal Atomic # 14 Polarization: 20.89 SS G_CDS: -5.02 Total: 15.87 kcal Total LS contribution 5.11 Total: 5.11 kcal Total: -33.00 -6.52 -39.52 kcal The number of atoms in the molecule is 39 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001600913277.mol2 39 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 28.268 kcal (2) G-P(sol) polarization free energy of solvation -33.002 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -4.734 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -6.521 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -39.523 kcal (6) G-S(sol) free energy of system = (1) + (5) -11.255 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.46 seconds