Wall clock time and date at job start Tue Mar 31 2020 06:23:50 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46491 * 1 3 3 C 1.34956 * 125.63962 * 2 1 4 4 C 1.50704 * 125.50239 * 0.02562 * 3 2 1 5 5 N 1.46895 * 109.46848 * 275.12025 * 4 3 2 6 6 C 1.46893 * 111.00705 * 288.06185 * 5 4 3 7 7 C 1.50702 * 109.47553 * 170.00097 * 6 5 4 8 8 H 1.08000 * 119.99480 * 0.02562 * 7 6 5 9 9 C 1.37873 * 120.00214 * 180.02562 * 7 6 5 10 10 N 1.31518 * 119.99915 * 359.97438 * 9 7 6 11 11 Si 1.86800 * 120.00272 * 179.97438 * 9 7 6 12 12 H 1.48496 * 109.47176 * 59.99829 * 11 9 7 13 13 H 1.48497 * 109.47290 * 180.02562 * 11 9 7 14 14 H 1.48503 * 109.46828 * 299.99997 * 11 9 7 15 15 C 1.46908 * 110.99695 * 164.10501 * 5 4 3 16 16 C 1.52993 * 109.47153 * 288.04084 * 15 5 4 17 17 C 1.47206 * 109.46951 * 185.24792 * 16 15 5 18 18 N 7.12406 * 58.46230 * 348.38003 * 2 1 3 19 19 C 1.35484 * 108.98775 * 179.73831 * 3 2 1 20 20 C 1.39797 * 107.84384 * 0.24977 * 19 3 2 21 21 C 1.37701 * 125.63581 * 180.16467 * 2 1 3 22 22 C 1.46490 * 126.26272 * 359.97438 * 21 2 1 23 23 O 1.21628 * 120.00331 * 180.28328 * 22 21 2 24 24 O 1.34894 * 120.00282 * 0.28848 * 22 21 2 25 25 H 1.09004 * 109.47299 * 95.60031 * 1 2 3 26 26 H 1.08998 * 109.47488 * 215.59928 * 1 2 3 27 27 H 1.09001 * 109.47201 * 335.60694 * 1 2 3 28 28 H 1.09005 * 109.47159 * 155.12589 * 4 3 2 29 29 H 1.08993 * 109.47194 * 35.12631 * 4 3 2 30 30 H 1.09001 * 109.47119 * 290.00605 * 6 5 4 31 31 H 1.09001 * 109.46927 * 49.99824 * 6 5 4 32 32 H 0.97002 * 120.00104 * 179.97438 * 10 9 7 33 33 H 1.08998 * 109.46974 * 48.04432 * 15 5 4 34 34 H 1.09002 * 109.46708 * 168.04320 * 15 5 4 35 35 H 1.09004 * 109.47689 * 305.24799 * 16 15 5 36 36 H 1.09003 * 109.46928 * 65.24937 * 16 15 5 37 37 H 1.08006 * 126.07649 * 180.20506 * 19 3 2 38 38 H 1.07994 * 126.51651 * 179.97438 * 20 19 3 39 39 H 0.96690 * 117.00494 * 179.97438 * 24 22 21 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4649 0.0000 0.0000 3 6 2.2513 1.0968 0.0000 4 6 1.7642 2.5229 0.0005 5 7 1.4885 2.9467 -1.3787 6 6 2.7359 3.1349 -2.1311 7 6 2.4178 3.3266 -3.5916 8 1 1.3914 3.3107 -3.9272 9 6 3.4369 3.5224 -4.4993 10 7 4.6868 3.5423 -4.0904 11 14 3.0426 3.7594 -6.3097 12 1 2.1795 4.9563 -6.4758 13 1 4.3038 3.9485 -7.0704 14 1 2.3310 2.5609 -6.8223 15 6 0.6709 4.1670 -1.4010 16 6 -0.7579 3.8317 -0.9688 17 6 -1.6067 5.0259 -1.1114 18 7 -2.2614 5.9474 -1.2230 19 6 3.5493 0.7086 0.0059 20 6 3.5784 -0.6891 0.0039 21 6 2.2672 -1.1191 -0.0032 22 6 1.8121 -2.5115 -0.0067 23 8 2.6242 -3.4169 -0.0041 24 8 0.4921 -2.7897 -0.0128 25 1 -0.3634 -0.1003 -1.0228 26 1 -0.3634 -0.8356 0.5982 27 1 -0.3634 0.9359 0.4244 28 1 2.5292 3.1680 0.4327 29 1 0.8516 2.5950 0.5922 30 1 3.2582 4.0144 -1.7544 31 1 3.3696 2.2564 -2.0095 32 1 5.4039 3.6797 -4.7291 33 1 1.0950 4.9010 -0.7158 34 1 0.6583 4.5774 -2.4107 35 1 -1.1490 3.0310 -1.5965 36 1 -0.7563 3.5092 0.0724 37 1 4.4088 1.3626 0.0104 38 1 4.4595 -1.3135 0.0069 39 1 0.2402 -3.7232 -0.0153 RHF calculation, no. of doubly occupied orbitals= 54 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001600913277.mol2 39 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 06:23:50 Heat of formation + Delta-G solvation = -33.986809 kcal Electronic energy + Delta-G solvation = -23048.328482 eV Core-core repulsion = 19570.158399 eV Total energy + Delta-G solvation = -3478.170083 eV No. of doubly occupied orbitals = 54 Molecular weight (most abundant/longest-lived isotopes) = 291.137 amu Computer time = 0.53 seconds Orbital eigenvalues (eV) -42.45113 -40.59847 -38.77456 -37.33389 -37.05549 -34.70194 -33.72530 -32.66438 -31.17955 -28.90245 -27.25113 -26.74199 -24.79736 -24.10686 -21.91679 -21.16886 -20.27876 -18.99776 -18.56763 -18.38116 -18.14303 -16.99071 -16.75612 -16.38003 -16.24126 -15.55564 -15.38938 -15.13694 -14.74987 -14.62269 -14.32077 -14.14690 -13.94163 -13.64507 -13.53567 -13.32223 -13.19356 -13.05562 -12.76671 -12.75416 -12.59724 -12.49298 -12.35594 -12.18391 -11.85313 -11.78886 -11.51226 -11.16561 -10.52055 -9.57520 -9.16520 -8.93442 -8.12033 -6.18521 0.26931 1.44145 1.45231 1.51921 1.65619 1.83716 1.89168 1.90748 2.21527 2.26784 2.44912 3.05003 3.22850 3.65553 3.88129 4.09241 4.16540 4.20268 4.31562 4.46936 4.60729 4.69031 4.72010 4.73591 4.80520 4.97773 5.09204 5.15847 5.18114 5.32354 5.39712 5.48597 5.57145 5.72475 5.86626 6.10862 6.16293 6.30293 6.42800 6.63255 6.71335 6.98153 7.02488 7.49756 8.98194 Molecular weight = 291.14amu Principal moments of inertia in cm(-1) A = 0.010522 B = 0.005541 C = 0.004151 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2660.555443 B = 5051.984692 C = 6743.852854 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.062 3.938 2 N -0.395 5.395 3 C 0.093 3.907 4 C 0.108 3.892 5 N -0.527 5.527 6 C 0.207 3.793 7 C -0.515 4.515 8 H 0.066 0.934 9 C 0.005 3.995 10 N -0.931 5.931 11 Si 0.951 3.049 12 H -0.270 1.270 13 H -0.290 1.290 14 H -0.272 1.272 15 C 0.064 3.936 16 C -0.014 4.014 17 C 0.242 3.758 18 N -0.504 5.504 19 C -0.225 4.225 20 C -0.112 4.112 21 C -0.078 4.078 22 C 0.567 3.433 23 O -0.550 6.550 24 O -0.503 6.503 25 H 0.081 0.919 26 H 0.103 0.897 27 H 0.116 0.884 28 H 0.056 0.944 29 H 0.123 0.877 30 H -0.034 1.034 31 H 0.021 0.979 32 H 0.260 0.740 33 H 0.040 0.960 34 H 0.066 0.934 35 H 0.134 0.866 36 H 0.143 0.857 37 H 0.134 0.866 38 H 0.145 0.855 39 H 0.433 0.567 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -11.006 -8.288 11.921 18.220 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.077 4.077 2 N -0.069 5.069 3 C -0.028 4.028 4 C -0.020 4.020 5 N -0.251 5.251 6 C 0.081 3.919 7 C -0.554 4.554 8 H 0.084 0.916 9 C -0.193 4.193 10 N -0.572 5.572 11 Si 0.778 3.222 12 H -0.196 1.196 13 H -0.216 1.216 14 H -0.197 1.197 15 C -0.066 4.066 16 C -0.053 4.053 17 C -0.075 4.075 18 N -0.182 5.182 19 C -0.249 4.249 20 C -0.139 4.139 21 C -0.188 4.188 22 C 0.415 3.585 23 O -0.442 6.442 24 O -0.317 6.317 25 H 0.100 0.900 26 H 0.121 0.879 27 H 0.134 0.866 28 H 0.074 0.926 29 H 0.141 0.859 30 H -0.016 1.016 31 H 0.039 0.961 32 H 0.069 0.931 33 H 0.058 0.942 34 H 0.084 0.916 35 H 0.152 0.848 36 H 0.161 0.839 37 H 0.152 0.848 38 H 0.162 0.838 39 H 0.295 0.705 Dipole moment (debyes) X Y Z Total from point charges -12.206 -7.160 11.466 18.213 hybrid contribution 1.332 -0.133 -0.959 1.647 sum -10.874 -7.293 10.507 16.788 Atomic orbital electron populations 1.22531 0.73858 1.06397 1.04964 1.43873 1.08003 1.03655 1.51339 1.20474 0.90067 0.89511 1.02774 1.20847 1.02157 0.87798 0.91211 1.61941 1.19722 1.32290 1.11134 1.19409 0.86344 0.94167 0.91984 1.21481 0.93202 1.47445 0.93233 0.91577 1.25719 0.94973 0.95738 1.02859 1.70057 0.99660 1.51557 1.35878 0.85706 0.77196 0.78801 0.80521 1.19553 1.21596 1.19711 1.21859 0.91657 0.91153 1.01908 1.19487 0.89891 0.88981 1.06988 1.29622 0.92614 0.94166 0.91057 1.81218 1.12699 1.12971 1.11340 1.20812 0.96619 0.94751 1.12754 1.21387 0.94870 0.95132 1.02489 1.19265 0.90928 0.84621 1.24035 1.19325 0.80597 0.87202 0.71413 1.90920 1.56233 1.47488 1.49605 1.84576 1.23937 1.37667 1.85532 0.90002 0.87856 0.86601 0.92569 0.85916 1.01590 0.96135 0.93098 0.94217 0.91568 0.84773 0.83928 0.84778 0.83768 0.70518 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.06 0.94 10.22 127.77 1.31 2.25 16 2 N -0.40 -9.91 3.15 -520.22 -1.64 -11.55 16 3 C 0.09 2.66 5.80 41.44 0.24 2.90 16 4 C 0.11 2.64 4.91 85.56 0.42 3.06 16 5 N -0.53 -16.66 4.40 -905.38 -3.98 -20.65 16 6 C 0.21 9.48 4.57 85.56 0.39 9.88 16 7 C -0.52 -26.45 8.28 25.60 0.21 -26.24 16 8 H 0.07 3.27 7.25 -2.91 -0.02 3.25 16 9 C 0.01 0.29 5.46 84.65 0.46 0.75 16 10 N -0.93 -54.02 13.29 21.45 0.28 -53.73 16 11 Si 0.95 43.09 29.54 68.60 2.03 45.11 16 12 H -0.27 -11.81 7.11 99.48 0.71 -11.11 16 13 H -0.29 -13.15 7.11 99.48 0.71 -12.45 16 14 H -0.27 -12.00 7.11 99.48 0.71 -11.30 16 15 C 0.06 1.71 4.77 86.30 0.41 2.12 16 16 C -0.01 -0.22 5.67 28.79 0.16 -0.06 16 17 C 0.24 5.54 15.43 89.45 1.38 6.92 16 18 N -0.50 -14.99 18.54 20.01 0.37 -14.62 16 19 C -0.23 -7.44 9.56 22.01 0.21 -7.23 16 20 C -0.11 -3.64 10.66 22.59 0.24 -3.40 16 21 C -0.08 -2.30 6.88 40.31 0.28 -2.03 16 22 C 0.57 14.98 8.29 69.97 0.58 15.56 16 23 O -0.55 -17.85 17.67 19.42 0.34 -17.51 16 24 O -0.50 -8.20 11.00 -58.08 -0.64 -8.84 16 25 H 0.08 1.31 8.14 -2.39 -0.02 1.29 16 26 H 0.10 1.28 6.52 -2.39 -0.02 1.26 16 27 H 0.12 1.01 6.88 -2.39 -0.02 0.99 16 28 H 0.06 1.45 8.05 -2.38 -0.02 1.44 16 29 H 0.12 1.77 5.32 -2.39 -0.01 1.75 16 30 H -0.03 -1.70 8.12 -2.39 -0.02 -1.72 16 31 H 0.02 1.05 6.37 -2.39 -0.02 1.04 16 32 H 0.26 14.52 8.31 -92.71 -0.77 13.74 16 33 H 0.04 1.03 8.05 -2.39 -0.02 1.01 16 34 H 0.07 2.24 6.58 -2.39 -0.02 2.23 16 35 H 0.13 1.84 8.14 -2.39 -0.02 1.83 16 36 H 0.14 1.13 6.73 -2.39 -0.02 1.11 16 37 H 0.13 4.57 8.06 -2.91 -0.02 4.54 16 38 H 0.14 4.51 8.06 -2.91 -0.02 4.49 16 39 H 0.43 2.93 9.11 -74.06 -0.67 2.25 16 Total: -1.00 -75.15 339.11 3.48 -71.67 By element: Atomic # 1 Polarization: 5.22 SS G_CDS: 0.42 Total: 5.64 kcal Atomic # 6 Polarization: -1.82 SS G_CDS: 6.30 Total: 4.47 kcal Atomic # 7 Polarization: -95.59 SS G_CDS: -4.96 Total: -100.55 kcal Atomic # 8 Polarization: -26.05 SS G_CDS: -0.30 Total: -26.35 kcal Atomic # 14 Polarization: 43.09 SS G_CDS: 2.03 Total: 45.11 kcal Total: -75.15 3.48 -71.67 kcal The number of atoms in the molecule is 39 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001600913277.mol2 39 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 37.685 kcal (2) G-P(sol) polarization free energy of solvation -75.153 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -37.468 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.481 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -71.672 kcal (6) G-S(sol) free energy of system = (1) + (5) -33.987 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.53 seconds