Wall clock time and date at job start Tue Mar 31 2020 06:34:57 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46496 * 1 3 3 C 1.46497 * 120.00603 * 2 1 4 4 C 1.53007 * 109.46976 * 269.99896 * 3 2 1 5 5 C 1.50704 * 109.47109 * 179.97438 * 4 3 2 6 6 N 1.34769 * 120.00010 * 180.02562 * 5 4 3 7 7 O 1.21279 * 119.99860 * 359.97438 * 5 4 3 8 8 C 1.34782 * 119.99493 * 179.97438 * 2 1 3 9 9 O 1.21589 * 119.99706 * 179.97438 * 8 2 1 10 10 N 1.34776 * 120.00325 * 359.97438 * 8 2 1 11 11 C 1.39956 * 120.00073 * 184.29589 * 10 8 2 12 12 C 1.39288 * 119.94360 * 144.79973 * 11 10 8 13 13 C 1.38487 * 120.42778 * 179.97438 * 12 11 10 14 14 C 1.37679 * 120.32134 * 0.29601 * 13 12 11 15 15 C 1.40743 * 119.88082 * 359.48336 * 14 13 12 16 16 C 1.41416 * 120.20735 * 180.26554 * 15 14 13 17 17 H 1.07993 * 119.99778 * 214.96091 * 16 15 14 18 18 C 1.39929 * 119.99946 * 34.96356 * 16 15 14 19 19 N 1.30838 * 120.00122 * 355.51087 * 18 16 15 20 20 Si 1.86803 * 119.99979 * 175.51276 * 18 16 15 21 21 H 1.48491 * 109.47108 * 89.99823 * 20 18 16 22 22 H 1.48497 * 109.47184 * 210.00065 * 20 18 16 23 23 H 1.48505 * 109.46945 * 329.99627 * 20 18 16 24 24 C 1.38229 * 119.95006 * 324.82353 * 11 10 8 25 25 H 1.08998 * 109.46984 * 270.00782 * 1 2 3 26 26 H 1.09006 * 109.46820 * 30.00040 * 1 2 3 27 27 H 1.08997 * 109.47867 * 149.99816 * 1 2 3 28 28 H 1.08995 * 109.47028 * 30.00056 * 3 2 1 29 29 H 1.08999 * 109.47631 * 150.00001 * 3 2 1 30 30 H 1.08995 * 109.47372 * 299.99949 * 4 3 2 31 31 H 1.09001 * 109.47046 * 60.00142 * 4 3 2 32 32 H 0.97005 * 120.00215 * 359.97438 * 6 5 4 33 33 H 0.97000 * 120.00138 * 180.02562 * 6 5 4 34 34 H 0.97002 * 119.99487 * 4.30288 * 10 8 2 35 35 H 1.08000 * 119.78691 * 0.02562 * 12 11 10 36 36 H 1.07998 * 119.83918 * 180.02562 * 13 12 11 37 37 H 1.08002 * 120.06175 * 179.72161 * 14 13 12 38 38 H 0.97002 * 119.99438 * 179.97438 * 19 18 16 39 39 H 1.08004 * 120.15604 * 359.97435 * 24 11 10 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4650 0.0000 0.0000 3 6 2.1976 1.2686 0.0000 4 6 2.4526 1.7102 -1.4426 5 6 3.2057 3.0156 -1.4426 6 7 3.5422 3.5994 -2.6098 7 8 3.5082 3.5412 -0.3923 8 6 2.1388 -1.1673 0.0005 9 8 3.3547 -1.1674 0.0001 10 7 1.4648 -2.3345 0.0016 11 6 2.1617 -3.5448 0.0929 12 6 1.6100 -4.6133 0.7958 13 6 2.2905 -5.8156 0.8921 14 6 3.5237 -5.9657 0.2986 15 6 4.0915 -4.8963 -0.4189 16 6 5.3552 -5.0447 -1.0359 17 1 6.0355 -4.2073 -1.0815 18 6 5.7241 -6.2767 -1.5874 19 7 4.9380 -7.3143 -1.4554 20 14 7.3389 -6.4401 -2.5121 21 1 8.4156 -6.8232 -1.5640 22 1 7.2064 -7.4849 -3.5590 23 1 7.6784 -5.1420 -3.1485 24 6 3.3964 -3.6777 -0.5141 25 1 -0.3633 0.0001 1.0277 26 1 -0.3633 0.8900 -0.5139 27 1 -0.3635 -0.8899 -0.5138 28 1 1.6086 2.0283 0.5138 29 1 3.1500 1.1383 0.5138 30 1 3.0416 0.9506 -1.9564 31 1 1.5002 1.8407 -1.9564 32 1 3.2999 3.1792 -3.4499 33 1 4.0272 4.4394 -2.6098 34 1 0.4968 -2.3356 -0.0611 35 1 0.6449 -4.5038 1.2680 36 1 1.8537 -6.6380 1.4391 37 1 4.0528 -6.9038 0.3801 38 1 5.1936 -8.1682 -1.8381 39 1 3.8249 -2.8497 -1.0593 RHF calculation, no. of doubly occupied orbitals= 54 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001624876820.mol2 39 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 06:34:57 Heat of formation + Delta-G solvation = -40.461331 kcal Electronic energy + Delta-G solvation = -22612.874219 eV Core-core repulsion = 19134.423380 eV Total energy + Delta-G solvation = -3478.450839 eV No. of doubly occupied orbitals = 54 Molecular weight (most abundant/longest-lived isotopes) = 291.137 amu Computer time = 0.52 seconds Orbital eigenvalues (eV) -40.28349 -39.48447 -37.46339 -35.54208 -34.45321 -33.86907 -33.02041 -31.24719 -29.73327 -27.98413 -26.83911 -25.23309 -24.31788 -21.35060 -20.83481 -20.46768 -19.28345 -18.14503 -17.59372 -17.31612 -16.94951 -15.71768 -15.54838 -15.44399 -15.20676 -14.58315 -14.30906 -13.97402 -13.66963 -13.33373 -13.10565 -12.92037 -12.78670 -12.40995 -12.32128 -12.06941 -11.59022 -11.15936 -11.13041 -11.04941 -10.88752 -10.37843 -10.22923 -10.14595 -9.91415 -9.66162 -9.36693 -9.16488 -8.83960 -8.63826 -7.31020 -6.83152 -6.50682 -4.31087 2.46726 2.68132 2.83913 3.00052 3.14717 3.17983 3.26780 3.40673 3.71547 4.05141 4.23604 4.69477 4.78284 4.89608 4.90600 4.98930 5.30317 5.35391 5.50506 5.67237 5.74250 5.99479 6.27174 6.41595 6.46303 6.53944 6.83142 6.83665 7.07967 7.10025 7.18434 7.28952 7.40268 7.73937 7.83489 8.04503 8.05444 8.20740 8.32271 8.42696 8.76395 8.95585 9.05405 9.08112 10.38449 Molecular weight = 291.14amu Principal moments of inertia in cm(-1) A = 0.015569 B = 0.004000 C = 0.003283 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1798.047385 B = 6999.165930 C = 8527.517721 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.080 3.920 2 N -0.639 5.639 3 C 0.151 3.849 4 C -0.161 4.161 5 C 0.524 3.476 6 N -0.858 5.858 7 O -0.544 6.544 8 C 0.698 3.302 9 O -0.561 6.561 10 N -0.680 5.680 11 C 0.156 3.844 12 C -0.250 4.250 13 C -0.100 4.100 14 C -0.161 4.161 15 C 0.113 3.887 16 C -0.461 4.461 17 H 0.076 0.924 18 C 0.071 3.929 19 N -0.815 5.815 20 Si 0.914 3.086 21 H -0.270 1.270 22 H -0.279 1.279 23 H -0.264 1.264 24 C -0.197 4.197 25 H 0.055 0.945 26 H 0.071 0.929 27 H 0.066 0.934 28 H 0.082 0.918 29 H 0.094 0.906 30 H 0.103 0.897 31 H 0.093 0.907 32 H 0.402 0.598 33 H 0.400 0.600 34 H 0.394 0.606 35 H 0.088 0.912 36 H 0.092 0.908 37 H 0.129 0.871 38 H 0.276 0.724 39 H 0.114 0.886 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -9.524 14.331 -3.432 17.546 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.064 4.064 2 N -0.378 5.378 3 C 0.027 3.973 4 C -0.203 4.203 5 C 0.309 3.691 6 N -0.422 5.422 7 O -0.421 6.421 8 C 0.400 3.600 9 O -0.436 6.436 10 N -0.327 5.327 11 C 0.064 3.936 12 C -0.272 4.272 13 C -0.119 4.119 14 C -0.180 4.180 15 C 0.111 3.889 16 C -0.492 4.492 17 H 0.094 0.906 18 C -0.144 4.144 19 N -0.443 5.443 20 Si 0.739 3.261 21 H -0.195 1.195 22 H -0.204 1.204 23 H -0.188 1.188 24 C -0.219 4.219 25 H 0.074 0.926 26 H 0.090 0.910 27 H 0.085 0.915 28 H 0.100 0.900 29 H 0.112 0.888 30 H 0.121 0.879 31 H 0.111 0.889 32 H 0.230 0.770 33 H 0.230 0.770 34 H 0.229 0.771 35 H 0.107 0.893 36 H 0.110 0.890 37 H 0.146 0.854 38 H 0.087 0.913 39 H 0.132 0.868 Dipole moment (debyes) X Y Z Total from point charges -8.536 14.291 -2.703 16.864 hybrid contribution 0.038 -0.006 -1.099 1.100 sum -8.498 14.285 -3.802 17.051 Atomic orbital electron populations 1.21708 0.80221 1.02697 1.01785 1.47093 1.06115 1.05010 1.79586 1.20944 0.98858 0.83327 0.94167 1.22097 1.01463 0.95213 1.01503 1.20594 0.78649 0.86299 0.83573 1.43903 1.61622 1.27891 1.08763 1.90757 1.54731 1.65332 1.31304 1.15956 0.85544 0.80229 0.78272 1.90974 1.11173 1.85488 1.55982 1.42709 1.09360 1.04053 1.76617 1.17278 0.94103 0.83143 0.99119 1.20104 1.01992 0.95110 1.09966 1.20524 0.95939 0.95248 1.00162 1.21629 0.95823 1.01196 0.99400 1.17565 0.92672 0.90075 0.88633 1.19521 1.00610 0.96412 1.32667 0.90630 1.25841 0.97870 0.95071 0.95568 1.69772 1.35798 1.01117 1.37578 0.86227 0.81716 0.78790 0.79404 1.19547 1.20389 1.18785 1.21295 0.95150 0.99705 1.05739 0.92602 0.91020 0.91512 0.89979 0.88761 0.87872 0.88887 0.76984 0.76960 0.77100 0.89348 0.88986 0.85373 0.91324 0.86847 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.08 0.69 10.24 59.84 0.61 1.30 16 2 N -0.64 -8.47 2.87 -187.35 -0.54 -9.01 16 3 C 0.15 1.91 4.70 -4.04 -0.02 1.89 16 4 C -0.16 -1.65 6.02 -27.88 -0.17 -1.82 16 5 C 0.52 5.79 8.10 -10.99 -0.09 5.70 16 6 N -0.86 -6.05 8.87 31.22 0.28 -5.77 16 7 O -0.54 -8.27 16.82 5.56 0.09 -8.18 16 8 C 0.70 12.89 8.12 -86.91 -0.71 12.18 16 9 O -0.56 -12.97 13.36 5.29 0.07 -12.90 16 10 N -0.68 -12.34 5.21 -14.27 -0.07 -12.41 16 11 C 0.16 3.57 6.29 -83.76 -0.53 3.04 16 12 C -0.25 -5.53 9.97 -39.10 -0.39 -5.92 16 13 C -0.10 -2.35 10.02 -39.69 -0.40 -2.74 16 14 C -0.16 -4.27 8.67 -38.84 -0.34 -4.61 16 15 C 0.11 3.16 5.55 -106.85 -0.59 2.57 16 16 C -0.46 -12.91 9.04 -37.74 -0.34 -13.25 16 17 H 0.08 2.09 7.85 -52.49 -0.41 1.68 16 18 C 0.07 1.85 5.42 -17.34 -0.09 1.76 16 19 N -0.81 -21.66 10.62 55.55 0.59 -21.07 16 20 Si 0.91 19.69 29.56 -169.99 -5.03 14.66 16 21 H -0.27 -5.72 7.11 56.52 0.40 -5.32 16 22 H -0.28 -5.83 7.11 56.52 0.40 -5.43 16 23 H -0.26 -5.67 7.11 56.52 0.40 -5.27 16 24 C -0.20 -5.19 8.43 -38.69 -0.33 -5.51 16 25 H 0.06 0.44 8.14 -51.93 -0.42 0.02 16 26 H 0.07 0.44 8.07 -51.93 -0.42 0.02 16 27 H 0.07 0.53 6.31 -51.93 -0.33 0.20 16 28 H 0.08 0.89 8.03 -51.93 -0.42 0.47 16 29 H 0.09 1.50 7.38 -51.93 -0.38 1.12 16 30 H 0.10 1.21 8.14 -51.93 -0.42 0.79 16 31 H 0.09 0.68 8.14 -51.93 -0.42 0.26 16 32 H 0.40 1.72 8.83 -40.82 -0.36 1.36 16 33 H 0.40 2.44 8.93 -40.82 -0.36 2.07 16 34 H 0.39 5.56 6.52 -40.82 -0.27 5.29 16 35 H 0.09 1.68 8.06 -52.49 -0.42 1.25 16 36 H 0.09 1.91 8.06 -52.49 -0.42 1.48 16 37 H 0.13 3.53 6.15 -52.49 -0.32 3.20 16 38 H 0.28 6.71 8.30 -40.82 -0.34 6.37 16 39 H 0.11 3.09 6.23 -52.48 -0.33 2.76 16 LS Contribution 332.32 15.07 5.01 5.01 Total: -1.00 -34.95 332.32 -7.82 -42.77 By element: Atomic # 1 Polarization: 17.19 SS G_CDS: -4.85 Total: 12.34 kcal Atomic # 6 Polarization: -2.06 SS G_CDS: -3.37 Total: -5.44 kcal Atomic # 7 Polarization: -48.53 SS G_CDS: 0.25 Total: -48.27 kcal Atomic # 8 Polarization: -21.24 SS G_CDS: 0.16 Total: -21.08 kcal Atomic # 14 Polarization: 19.69 SS G_CDS: -5.03 Total: 14.66 kcal Total LS contribution 5.01 Total: 5.01 kcal Total: -34.95 -7.82 -42.77 kcal The number of atoms in the molecule is 39 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001624876820.mol2 39 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 2.313 kcal (2) G-P(sol) polarization free energy of solvation -34.954 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -32.641 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.820 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -42.774 kcal (6) G-S(sol) free energy of system = (1) + (5) -40.461 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.52 seconds