Wall clock time and date at job start Tue Mar 31 2020 06:34:57 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46496 * 1 3 3 C 1.46497 * 120.00603 * 2 1 4 4 C 1.53007 * 109.46976 * 269.99896 * 3 2 1 5 5 C 1.50704 * 109.47109 * 179.97438 * 4 3 2 6 6 N 1.34769 * 120.00010 * 180.02562 * 5 4 3 7 7 O 1.21279 * 119.99860 * 359.97438 * 5 4 3 8 8 C 1.34782 * 119.99493 * 179.97438 * 2 1 3 9 9 O 1.21589 * 119.99706 * 179.97438 * 8 2 1 10 10 N 1.34776 * 120.00325 * 359.97438 * 8 2 1 11 11 C 1.39956 * 120.00073 * 184.29589 * 10 8 2 12 12 C 1.39288 * 119.94360 * 144.79973 * 11 10 8 13 13 C 1.38487 * 120.42778 * 179.97438 * 12 11 10 14 14 C 1.37679 * 120.32134 * 0.29601 * 13 12 11 15 15 C 1.40743 * 119.88082 * 359.48336 * 14 13 12 16 16 C 1.41416 * 120.20735 * 180.26554 * 15 14 13 17 17 H 1.07993 * 119.99778 * 214.96091 * 16 15 14 18 18 C 1.39929 * 119.99946 * 34.96356 * 16 15 14 19 19 N 1.30838 * 120.00122 * 355.51087 * 18 16 15 20 20 Si 1.86803 * 119.99979 * 175.51276 * 18 16 15 21 21 H 1.48491 * 109.47108 * 89.99823 * 20 18 16 22 22 H 1.48497 * 109.47184 * 210.00065 * 20 18 16 23 23 H 1.48505 * 109.46945 * 329.99627 * 20 18 16 24 24 C 1.38229 * 119.95006 * 324.82353 * 11 10 8 25 25 H 1.08998 * 109.46984 * 270.00782 * 1 2 3 26 26 H 1.09006 * 109.46820 * 30.00040 * 1 2 3 27 27 H 1.08997 * 109.47867 * 149.99816 * 1 2 3 28 28 H 1.08995 * 109.47028 * 30.00056 * 3 2 1 29 29 H 1.08999 * 109.47631 * 150.00001 * 3 2 1 30 30 H 1.08995 * 109.47372 * 299.99949 * 4 3 2 31 31 H 1.09001 * 109.47046 * 60.00142 * 4 3 2 32 32 H 0.97005 * 120.00215 * 359.97438 * 6 5 4 33 33 H 0.97000 * 120.00138 * 180.02562 * 6 5 4 34 34 H 0.97002 * 119.99487 * 4.30288 * 10 8 2 35 35 H 1.08000 * 119.78691 * 0.02562 * 12 11 10 36 36 H 1.07998 * 119.83918 * 180.02562 * 13 12 11 37 37 H 1.08002 * 120.06175 * 179.72161 * 14 13 12 38 38 H 0.97002 * 119.99438 * 179.97438 * 19 18 16 39 39 H 1.08004 * 120.15604 * 359.97435 * 24 11 10 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4650 0.0000 0.0000 3 6 2.1976 1.2686 0.0000 4 6 2.4526 1.7102 -1.4426 5 6 3.2057 3.0156 -1.4426 6 7 3.5422 3.5994 -2.6098 7 8 3.5082 3.5412 -0.3923 8 6 2.1388 -1.1673 0.0005 9 8 3.3547 -1.1674 0.0001 10 7 1.4648 -2.3345 0.0016 11 6 2.1617 -3.5448 0.0929 12 6 1.6100 -4.6133 0.7958 13 6 2.2905 -5.8156 0.8921 14 6 3.5237 -5.9657 0.2986 15 6 4.0915 -4.8963 -0.4189 16 6 5.3552 -5.0447 -1.0359 17 1 6.0355 -4.2073 -1.0815 18 6 5.7241 -6.2767 -1.5874 19 7 4.9380 -7.3143 -1.4554 20 14 7.3389 -6.4401 -2.5121 21 1 8.4156 -6.8232 -1.5640 22 1 7.2064 -7.4849 -3.5590 23 1 7.6784 -5.1420 -3.1485 24 6 3.3964 -3.6777 -0.5141 25 1 -0.3633 0.0001 1.0277 26 1 -0.3633 0.8900 -0.5139 27 1 -0.3635 -0.8899 -0.5138 28 1 1.6086 2.0283 0.5138 29 1 3.1500 1.1383 0.5138 30 1 3.0416 0.9506 -1.9564 31 1 1.5002 1.8407 -1.9564 32 1 3.2999 3.1792 -3.4499 33 1 4.0272 4.4394 -2.6098 34 1 0.4968 -2.3356 -0.0611 35 1 0.6449 -4.5038 1.2680 36 1 1.8537 -6.6380 1.4391 37 1 4.0528 -6.9038 0.3801 38 1 5.1936 -8.1682 -1.8381 39 1 3.8249 -2.8497 -1.0593 RHF calculation, no. of doubly occupied orbitals= 54 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001624876820.mol2 39 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 06:34:57 Heat of formation + Delta-G solvation = -66.968528 kcal Electronic energy + Delta-G solvation = -22614.023657 eV Core-core repulsion = 19134.423380 eV Total energy + Delta-G solvation = -3479.600277 eV No. of doubly occupied orbitals = 54 Molecular weight (most abundant/longest-lived isotopes) = 291.137 amu Computer time = 0.56 seconds Orbital eigenvalues (eV) -41.65343 -40.49323 -39.20328 -36.84798 -36.18399 -34.84064 -34.66923 -32.29142 -31.69095 -29.69817 -27.71538 -27.21807 -25.50409 -23.02350 -22.61519 -21.48201 -20.73485 -19.69867 -18.88174 -18.36758 -17.90541 -17.38086 -16.99830 -16.64715 -16.47534 -16.37780 -15.80699 -15.20842 -15.05117 -14.71339 -14.44914 -14.18009 -14.04109 -13.89744 -13.54446 -13.22399 -13.17488 -12.92351 -12.83360 -12.79484 -12.14071 -12.10309 -11.98161 -11.53533 -11.20278 -11.15622 -10.96670 -10.67461 -10.65562 -9.76122 -9.27657 -8.67953 -8.43946 -6.38927 0.95484 1.04462 1.36972 1.46229 1.53027 1.57514 1.60556 2.15017 2.24690 2.64086 2.82621 3.05086 3.71547 3.83189 3.98788 4.13809 4.29583 4.50440 4.50938 4.63407 4.65800 4.75426 4.90165 4.97864 5.08330 5.16552 5.18112 5.19499 5.38696 5.53079 5.73784 5.86748 5.88041 6.03429 6.12391 6.20457 6.41353 6.41455 6.74622 6.97150 7.00193 7.05388 7.31422 7.58421 8.44442 Molecular weight = 291.14amu Principal moments of inertia in cm(-1) A = 0.015569 B = 0.004000 C = 0.003283 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1798.047385 B = 6999.165930 C = 8527.517721 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.069 3.931 2 N -0.625 5.625 3 C 0.149 3.851 4 C -0.151 4.151 5 C 0.522 3.478 6 N -0.837 5.837 7 O -0.593 6.593 8 C 0.691 3.309 9 O -0.617 6.617 10 N -0.667 5.667 11 C 0.164 3.836 12 C -0.237 4.237 13 C -0.097 4.097 14 C -0.187 4.187 15 C 0.082 3.918 16 C -0.506 4.506 17 H 0.058 0.942 18 C 0.032 3.968 19 N -0.839 5.839 20 Si 0.985 3.015 21 H -0.261 1.261 22 H -0.262 1.262 23 H -0.267 1.267 24 C -0.223 4.223 25 H 0.070 0.930 26 H 0.106 0.894 27 H 0.077 0.923 28 H 0.107 0.893 29 H 0.050 0.950 30 H 0.086 0.914 31 H 0.134 0.866 32 H 0.418 0.582 33 H 0.408 0.592 34 H 0.417 0.583 35 H 0.134 0.866 36 H 0.125 0.875 37 H 0.111 0.889 38 H 0.285 0.715 39 H 0.091 0.909 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -12.111 15.040 -4.059 19.732 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.072 4.072 2 N -0.362 5.362 3 C 0.025 3.975 4 C -0.192 4.192 5 C 0.307 3.693 6 N -0.401 5.401 7 O -0.474 6.474 8 C 0.393 3.607 9 O -0.496 6.496 10 N -0.317 5.317 11 C 0.070 3.930 12 C -0.258 4.258 13 C -0.116 4.116 14 C -0.207 4.207 15 C 0.079 3.921 16 C -0.537 4.537 17 H 0.076 0.924 18 C -0.179 4.179 19 N -0.467 5.467 20 Si 0.806 3.194 21 H -0.186 1.186 22 H -0.186 1.186 23 H -0.192 1.192 24 C -0.245 4.245 25 H 0.088 0.912 26 H 0.125 0.875 27 H 0.096 0.904 28 H 0.125 0.875 29 H 0.069 0.931 30 H 0.104 0.896 31 H 0.151 0.849 32 H 0.249 0.751 33 H 0.239 0.761 34 H 0.256 0.744 35 H 0.152 0.848 36 H 0.143 0.857 37 H 0.129 0.871 38 H 0.095 0.905 39 H 0.109 0.891 Dipole moment (debyes) X Y Z Total from point charges -11.219 15.043 -3.372 19.067 hybrid contribution 0.681 -0.100 -0.860 1.102 sum -10.538 14.943 -4.233 18.769 Atomic orbital electron populations 1.22107 0.76605 1.05044 1.03492 1.47078 1.08145 1.03254 1.77720 1.20980 0.97395 0.83363 0.95713 1.21983 1.03083 0.94177 0.99973 1.20721 0.78419 0.86396 0.83771 1.43726 1.60184 1.27758 1.08419 1.90741 1.56826 1.66660 1.33140 1.16223 0.85034 0.81446 0.77989 1.90952 1.13982 1.86440 1.58248 1.42444 1.10271 1.02604 1.76429 1.17333 0.93073 0.85069 0.97489 1.20535 1.03209 0.93787 1.08268 1.20890 0.94702 0.96890 0.99132 1.21562 0.97585 1.00378 1.01191 1.17877 0.93346 0.91297 0.89540 1.19669 1.01435 0.97201 1.35372 0.92354 1.26642 1.01413 0.94080 0.95798 1.69827 1.37319 1.01599 1.37959 0.85175 0.77153 0.78788 0.78331 1.18598 1.18576 1.19181 1.21237 0.97084 0.98702 1.07458 0.91191 0.87531 0.90395 0.87527 0.93105 0.89599 0.84852 0.75082 0.76098 0.74363 0.84810 0.85740 0.87067 0.90478 0.89121 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.07 0.90 10.24 127.77 1.31 2.21 16 2 N -0.62 -15.46 2.87 -864.92 -2.49 -17.94 16 3 C 0.15 3.65 4.70 86.38 0.41 4.06 16 4 C -0.15 -2.89 6.02 29.85 0.18 -2.71 16 5 C 0.52 11.07 8.10 87.66 0.71 11.78 16 6 N -0.84 -10.43 8.87 -173.54 -1.54 -11.97 16 7 O -0.59 -18.13 16.82 -3.03 -0.05 -18.18 16 8 C 0.69 25.36 8.12 179.05 1.45 26.82 16 9 O -0.62 -29.90 13.36 -4.00 -0.05 -29.96 16 10 N -0.67 -23.19 5.21 -317.32 -1.65 -24.85 16 11 C 0.16 7.44 6.29 38.09 0.24 7.68 16 12 C -0.24 -9.88 9.97 22.58 0.23 -9.66 16 13 C -0.10 -4.46 10.02 22.20 0.22 -4.24 16 14 C -0.19 -10.24 8.67 22.75 0.20 -10.04 16 15 C 0.08 4.81 5.55 -21.31 -0.12 4.69 16 16 C -0.51 -30.11 9.04 23.46 0.21 -29.90 16 17 H 0.06 3.51 7.85 -2.91 -0.02 3.48 16 18 C 0.03 1.76 5.42 85.25 0.46 2.22 16 19 N -0.84 -45.82 10.62 21.82 0.23 -45.59 16 20 Si 0.98 41.43 29.56 68.60 2.03 43.46 16 21 H -0.26 -10.55 7.11 99.48 0.71 -9.84 16 22 H -0.26 -10.20 7.11 99.48 0.71 -9.49 16 23 H -0.27 -11.29 7.11 99.48 0.71 -10.58 16 24 C -0.22 -12.25 8.43 22.85 0.19 -12.06 16 25 H 0.07 0.79 8.14 -2.39 -0.02 0.78 16 26 H 0.11 0.73 8.07 -2.38 -0.02 0.71 16 27 H 0.08 0.88 6.31 -2.39 -0.02 0.86 16 28 H 0.11 2.09 8.03 -2.39 -0.02 2.07 16 29 H 0.05 1.71 7.38 -2.39 -0.02 1.69 16 30 H 0.09 2.01 8.14 -2.39 -0.02 1.99 16 31 H 0.13 1.45 8.14 -2.39 -0.02 1.43 16 32 H 0.42 2.64 8.83 -92.70 -0.82 1.82 16 33 H 0.41 4.35 8.93 -92.71 -0.83 3.52 16 34 H 0.42 10.35 6.52 -92.71 -0.60 9.74 16 35 H 0.13 4.38 8.06 -2.91 -0.02 4.36 16 36 H 0.12 4.82 8.06 -2.91 -0.02 4.80 16 37 H 0.11 6.37 6.15 -2.91 -0.02 6.35 16 38 H 0.28 14.02 8.30 -92.71 -0.77 13.25 16 39 H 0.09 5.30 6.23 -2.91 -0.02 5.29 16 Total: -1.00 -82.98 332.32 1.03 -81.95 By element: Atomic # 1 Polarization: 33.36 SS G_CDS: -1.13 Total: 32.23 kcal Atomic # 6 Polarization: -14.84 SS G_CDS: 5.69 Total: -9.15 kcal Atomic # 7 Polarization: -94.91 SS G_CDS: -5.45 Total: -100.36 kcal Atomic # 8 Polarization: -48.03 SS G_CDS: -0.10 Total: -48.13 kcal Atomic # 14 Polarization: 41.43 SS G_CDS: 2.03 Total: 43.46 kcal Total: -82.98 1.03 -81.95 kcal The number of atoms in the molecule is 39 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001624876820.mol2 39 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 14.978 kcal (2) G-P(sol) polarization free energy of solvation -82.978 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -68.000 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 1.032 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -81.947 kcal (6) G-S(sol) free energy of system = (1) + (5) -66.969 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.56 seconds