Wall clock time and date at job start Tue Mar 31 2020 06:38:40 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46505 * 1 3 3 C 1.34765 * 120.00243 * 2 1 4 4 O 1.21281 * 119.99871 * 0.02562 * 3 2 1 5 5 C 1.50701 * 120.00077 * 180.02562 * 3 2 1 6 6 C 1.53008 * 109.47095 * 180.02562 * 5 3 2 7 7 N 1.46496 * 109.47113 * 179.97438 * 6 5 3 8 8 C 1.34779 * 120.00026 * 179.97438 * 7 6 5 9 9 O 1.21588 * 120.00022 * 0.02562 * 8 7 6 10 10 N 1.34780 * 119.99980 * 180.02562 * 8 7 6 11 11 C 1.39953 * 119.99903 * 174.29065 * 10 8 7 12 12 C 1.39278 * 119.94776 * 145.42240 * 11 10 8 13 13 C 1.38489 * 120.43308 * 179.97438 * 12 11 10 14 14 C 1.37683 * 120.31833 * 0.29976 * 13 12 11 15 15 C 1.40741 * 119.88051 * 359.43220 * 14 13 12 16 16 C 1.41414 * 120.20785 * 180.31642 * 15 14 13 17 17 H 1.08000 * 119.99316 * 214.42503 * 16 15 14 18 18 C 1.39928 * 120.00321 * 34.42160 * 16 15 14 19 19 N 1.30833 * 119.99647 * 5.54067 * 18 16 15 20 20 Si 1.86798 * 120.00358 * 185.53839 * 18 16 15 21 21 H 1.48503 * 109.46824 * 0.02562 * 20 18 16 22 22 H 1.48495 * 109.47266 * 119.99875 * 20 18 16 23 23 H 1.48495 * 109.47228 * 240.00446 * 20 18 16 24 24 C 1.38230 * 119.94722 * 325.39902 * 11 10 8 25 25 H 1.08991 * 109.47098 * 59.99626 * 1 2 3 26 26 H 1.08999 * 109.47296 * 179.97438 * 1 2 3 27 27 H 1.09004 * 109.46581 * 299.99563 * 1 2 3 28 28 H 0.97007 * 119.99695 * 180.02562 * 2 1 3 29 29 H 1.09005 * 109.47258 * 60.00572 * 5 3 2 30 30 H 1.08992 * 109.47570 * 300.00045 * 5 3 2 31 31 H 1.09005 * 109.46656 * 60.00136 * 6 5 3 32 32 H 1.08999 * 109.47185 * 300.00668 * 6 5 3 33 33 H 0.97007 * 119.99842 * 0.02562 * 7 6 5 34 34 H 0.97005 * 120.00043 * 354.29167 * 10 8 7 35 35 H 1.08009 * 119.78558 * 359.97438 * 12 11 10 36 36 H 1.08001 * 119.84213 * 180.02562 * 13 12 11 37 37 H 1.07995 * 120.05688 * 179.70037 * 14 13 12 38 38 H 0.97001 * 119.99616 * 179.97438 * 19 18 16 39 39 H 1.08002 * 120.16114 * 359.97438 * 24 11 10 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4651 0.0000 0.0000 3 6 2.1389 1.1671 0.0000 4 8 1.5325 2.2174 0.0005 5 6 3.6459 1.1670 -0.0006 6 6 4.1560 2.6096 0.0002 7 7 5.6210 2.6095 0.0002 8 6 6.2949 3.7767 0.0003 9 8 5.6870 4.8297 0.0009 10 7 7.6427 3.7767 -0.0001 11 6 8.3424 4.9827 -0.1206 12 6 9.5508 5.1555 0.5501 13 6 10.2519 6.3445 0.4375 14 6 9.7581 7.3720 -0.3345 15 6 8.5411 7.2098 -1.0225 16 6 8.0309 8.2583 -1.8227 17 1 6.9645 8.4141 -1.8928 18 6 8.9077 9.0937 -2.5236 19 7 10.1912 8.8400 -2.5264 20 14 8.2457 10.5712 -3.4553 21 1 6.7708 10.6372 -3.2951 22 1 8.8578 11.8118 -2.9154 23 1 8.5822 10.4396 -4.8956 24 6 7.8334 6.0005 -0.9054 25 1 -0.3633 0.5138 -0.8899 26 1 -0.3634 -1.0276 -0.0005 27 1 -0.3632 0.5138 0.8901 28 1 1.9500 -0.8401 -0.0004 29 1 4.0089 0.6535 -0.8909 30 1 4.0097 0.6530 0.8891 31 1 3.7930 3.1228 0.8907 32 1 3.7922 3.1241 -0.8892 33 1 6.1059 1.7694 -0.0006 34 1 8.1277 2.9407 0.0830 35 1 9.9438 4.3568 1.1619 36 1 11.1882 6.4680 0.9614 37 1 10.3059 8.2992 -0.4154 38 1 10.7989 9.4189 -3.0126 39 1 6.8968 5.8672 -1.4265 RHF calculation, no. of doubly occupied orbitals= 54 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001661888562.mol2 39 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 06:38:40 Heat of formation + Delta-G solvation = -46.541008 kcal Electronic energy + Delta-G solvation = -21886.193045 eV Core-core repulsion = 18407.478571 eV Total energy + Delta-G solvation = -3478.714474 eV No. of doubly occupied orbitals = 54 Molecular weight (most abundant/longest-lived isotopes) = 291.137 amu Computer time = 0.50 seconds Orbital eigenvalues (eV) -40.16951 -39.67764 -37.36007 -35.25148 -34.85762 -34.24925 -32.93963 -31.16271 -29.71948 -28.09749 -26.97840 -25.19512 -23.64300 -21.53359 -20.84200 -20.78695 -20.00298 -18.17501 -17.54754 -17.34604 -16.29103 -16.19803 -15.65161 -15.28676 -14.98866 -14.59972 -14.39214 -14.09498 -13.92649 -13.62029 -13.11307 -12.87451 -12.75895 -12.69949 -12.12044 -12.02644 -11.73214 -11.55771 -11.08196 -11.06687 -10.86649 -10.37024 -10.27451 -10.13194 -9.59426 -9.53402 -9.38789 -9.16976 -8.91376 -8.87592 -7.29427 -6.81390 -6.53731 -4.27318 2.31113 2.61222 2.81995 2.96999 3.17599 3.21268 3.24992 3.26771 3.77745 4.07837 4.32340 4.57909 4.68318 4.75474 4.79826 4.87748 5.11316 5.12596 5.42232 5.74267 5.78526 5.91314 6.01068 6.27871 6.42705 6.56742 6.82305 6.85370 7.04643 7.10240 7.17467 7.32783 7.41553 7.77078 7.86357 7.87392 8.03849 8.21612 8.32573 8.49397 8.76518 8.98695 9.07120 9.10896 10.40090 Molecular weight = 291.14amu Principal moments of inertia in cm(-1) A = 0.021066 B = 0.002917 C = 0.002604 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1328.816624 B = 9596.166785 C =10750.787636 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.086 3.914 2 N -0.739 5.739 3 C 0.515 3.485 4 O -0.528 6.528 5 C -0.152 4.152 6 C 0.154 3.846 7 N -0.754 5.754 8 C 0.698 3.302 9 O -0.562 6.562 10 N -0.682 5.682 11 C 0.164 3.836 12 C -0.252 4.252 13 C -0.097 4.097 14 C -0.159 4.159 15 C 0.120 3.880 16 C -0.463 4.463 17 H 0.077 0.923 18 C 0.072 3.928 19 N -0.812 5.812 20 Si 0.911 3.089 21 H -0.261 1.261 22 H -0.274 1.274 23 H -0.276 1.276 24 C -0.200 4.200 25 H 0.060 0.940 26 H 0.074 0.926 27 H 0.060 0.940 28 H 0.402 0.598 29 H 0.101 0.899 30 H 0.100 0.900 31 H 0.074 0.926 32 H 0.075 0.925 33 H 0.391 0.609 34 H 0.394 0.606 35 H 0.089 0.911 36 H 0.092 0.908 37 H 0.118 0.882 38 H 0.276 0.724 39 H 0.108 0.892 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -9.874 -20.247 3.773 22.840 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.058 4.058 2 N -0.392 5.392 3 C 0.301 3.699 4 O -0.404 6.404 5 C -0.193 4.193 6 C 0.029 3.971 7 N -0.411 5.411 8 C 0.398 3.602 9 O -0.436 6.436 10 N -0.328 5.328 11 C 0.071 3.929 12 C -0.274 4.274 13 C -0.116 4.116 14 C -0.179 4.179 15 C 0.117 3.883 16 C -0.494 4.494 17 H 0.095 0.905 18 C -0.143 4.143 19 N -0.440 5.440 20 Si 0.736 3.264 21 H -0.185 1.185 22 H -0.200 1.200 23 H -0.201 1.201 24 C -0.221 4.221 25 H 0.079 0.921 26 H 0.093 0.907 27 H 0.079 0.921 28 H 0.235 0.765 29 H 0.119 0.881 30 H 0.119 0.881 31 H 0.092 0.908 32 H 0.093 0.907 33 H 0.224 0.776 34 H 0.227 0.773 35 H 0.107 0.893 36 H 0.110 0.890 37 H 0.136 0.864 38 H 0.087 0.913 39 H 0.126 0.874 Dipole moment (debyes) X Y Z Total from point charges -10.746 -18.393 3.654 21.613 hybrid contribution 0.513 -0.819 -0.446 1.064 sum -10.233 -19.211 3.209 22.002 Atomic orbital electron populations 1.21546 0.79489 1.02183 1.02562 1.45804 1.07900 1.08693 1.76770 1.20476 0.89888 0.83693 0.75851 1.90787 1.70390 1.31118 1.48067 1.21810 0.92474 0.99867 1.05102 1.20785 0.78259 0.93900 1.04114 1.45060 1.06733 1.07231 1.82123 1.15932 0.81937 0.83986 0.78350 1.91005 1.67439 1.29717 1.55470 1.42567 1.04186 1.09279 1.76802 1.17234 0.92563 0.85192 0.97881 1.20064 0.98876 0.99537 1.08936 1.20479 0.97969 0.93681 0.99502 1.21356 0.99070 0.98763 0.98710 1.17522 0.90958 0.90715 0.89095 1.19564 0.94496 1.10907 1.24404 0.90469 1.25840 0.94534 0.97872 0.96022 1.69795 1.03280 1.35520 1.35378 0.86214 0.80309 0.80795 0.79073 1.18514 1.19960 1.20140 1.21130 1.02980 0.93803 1.04220 0.92110 0.90672 0.92124 0.76451 0.88068 0.88138 0.90788 0.90680 0.77566 0.77318 0.89266 0.88967 0.86433 0.91306 0.87447 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.09 0.49 10.70 59.85 0.64 1.13 16 2 N -0.74 -4.44 5.71 -67.08 -0.38 -4.82 16 3 C 0.52 4.94 7.83 -10.99 -0.09 4.85 16 4 O -0.53 -7.79 15.98 5.56 0.09 -7.70 16 5 C -0.15 -1.09 5.81 -27.88 -0.16 -1.25 16 6 C 0.15 1.92 4.96 -4.04 -0.02 1.89 16 7 N -0.75 -9.52 5.56 -65.22 -0.36 -9.88 16 8 C 0.70 13.05 8.28 -86.91 -0.72 12.33 16 9 O -0.56 -13.58 14.13 5.29 0.07 -13.50 16 10 N -0.68 -12.36 5.34 -14.27 -0.08 -12.44 16 11 C 0.16 3.79 6.25 -83.77 -0.52 3.27 16 12 C -0.25 -5.63 9.97 -39.10 -0.39 -6.02 16 13 C -0.10 -2.31 10.02 -39.69 -0.40 -2.70 16 14 C -0.16 -4.28 8.62 -38.84 -0.33 -4.61 16 15 C 0.12 3.40 5.50 -106.85 -0.59 2.82 16 16 C -0.46 -13.18 9.04 -37.74 -0.34 -13.52 16 17 H 0.08 2.19 7.85 -52.49 -0.41 1.78 16 18 C 0.07 1.92 5.31 -17.34 -0.09 1.83 16 19 N -0.81 -21.93 10.97 55.55 0.61 -21.32 16 20 Si 0.91 20.00 29.56 -169.99 -5.03 14.97 16 21 H -0.26 -5.75 7.11 56.52 0.40 -5.35 16 22 H -0.27 -5.86 7.11 56.52 0.40 -5.46 16 23 H -0.28 -5.93 7.11 56.52 0.40 -5.53 16 24 C -0.20 -5.36 8.39 -38.69 -0.32 -5.69 16 25 H 0.06 0.41 8.14 -51.93 -0.42 -0.01 16 26 H 0.07 0.19 8.14 -51.93 -0.42 -0.23 16 27 H 0.06 0.41 8.14 -51.93 -0.42 -0.02 16 28 H 0.40 1.01 8.83 -40.82 -0.36 0.65 16 29 H 0.10 0.49 8.14 -51.93 -0.42 0.07 16 30 H 0.10 0.47 8.14 -51.93 -0.42 0.04 16 31 H 0.07 1.08 8.10 -51.93 -0.42 0.66 16 32 H 0.07 1.12 8.10 -51.93 -0.42 0.70 16 33 H 0.39 3.25 8.49 -40.82 -0.35 2.91 16 34 H 0.39 5.33 8.84 -40.82 -0.36 4.97 16 35 H 0.09 1.70 8.06 -52.48 -0.42 1.27 16 36 H 0.09 1.92 8.06 -52.49 -0.42 1.49 16 37 H 0.12 3.24 6.48 -52.49 -0.34 2.90 16 38 H 0.28 6.79 8.30 -40.82 -0.34 6.45 16 39 H 0.11 3.01 6.51 -52.49 -0.34 2.67 16 LS Contribution 337.59 15.07 5.09 5.09 Total: -1.00 -36.88 337.59 -8.42 -45.30 By element: Atomic # 1 Polarization: 15.07 SS G_CDS: -5.10 Total: 9.97 kcal Atomic # 6 Polarization: -2.33 SS G_CDS: -3.34 Total: -5.67 kcal Atomic # 7 Polarization: -48.25 SS G_CDS: -0.21 Total: -48.46 kcal Atomic # 8 Polarization: -21.37 SS G_CDS: 0.16 Total: -21.21 kcal Atomic # 14 Polarization: 20.00 SS G_CDS: -5.03 Total: 14.97 kcal Total LS contribution 5.09 Total: 5.09 kcal Total: -36.88 -8.42 -45.30 kcal The number of atoms in the molecule is 39 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001661888562.mol2 39 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -1.238 kcal (2) G-P(sol) polarization free energy of solvation -36.882 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -38.120 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.421 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -45.303 kcal (6) G-S(sol) free energy of system = (1) + (5) -46.541 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.50 seconds