Wall clock time and date at job start Tue Mar 31 2020 06:38:39 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46505 * 1 3 3 C 1.34765 * 120.00243 * 2 1 4 4 O 1.21281 * 119.99871 * 0.02562 * 3 2 1 5 5 C 1.50701 * 120.00077 * 180.02562 * 3 2 1 6 6 C 1.53008 * 109.47095 * 180.02562 * 5 3 2 7 7 N 1.46496 * 109.47113 * 179.97438 * 6 5 3 8 8 C 1.34779 * 120.00026 * 179.97438 * 7 6 5 9 9 O 1.21588 * 120.00022 * 0.02562 * 8 7 6 10 10 N 1.34780 * 119.99980 * 180.02562 * 8 7 6 11 11 C 1.39953 * 119.99903 * 174.29065 * 10 8 7 12 12 C 1.39278 * 119.94776 * 145.42240 * 11 10 8 13 13 C 1.38489 * 120.43308 * 179.97438 * 12 11 10 14 14 C 1.37683 * 120.31833 * 0.29976 * 13 12 11 15 15 C 1.40741 * 119.88051 * 359.43220 * 14 13 12 16 16 C 1.41414 * 120.20785 * 180.31642 * 15 14 13 17 17 H 1.08000 * 119.99316 * 214.42503 * 16 15 14 18 18 C 1.39928 * 120.00321 * 34.42160 * 16 15 14 19 19 N 1.30833 * 119.99647 * 5.54067 * 18 16 15 20 20 Si 1.86798 * 120.00358 * 185.53839 * 18 16 15 21 21 H 1.48503 * 109.46824 * 0.02562 * 20 18 16 22 22 H 1.48495 * 109.47266 * 119.99875 * 20 18 16 23 23 H 1.48495 * 109.47228 * 240.00446 * 20 18 16 24 24 C 1.38230 * 119.94722 * 325.39902 * 11 10 8 25 25 H 1.08991 * 109.47098 * 59.99626 * 1 2 3 26 26 H 1.08999 * 109.47296 * 179.97438 * 1 2 3 27 27 H 1.09004 * 109.46581 * 299.99563 * 1 2 3 28 28 H 0.97007 * 119.99695 * 180.02562 * 2 1 3 29 29 H 1.09005 * 109.47258 * 60.00572 * 5 3 2 30 30 H 1.08992 * 109.47570 * 300.00045 * 5 3 2 31 31 H 1.09005 * 109.46656 * 60.00136 * 6 5 3 32 32 H 1.08999 * 109.47185 * 300.00668 * 6 5 3 33 33 H 0.97007 * 119.99842 * 0.02562 * 7 6 5 34 34 H 0.97005 * 120.00043 * 354.29167 * 10 8 7 35 35 H 1.08009 * 119.78558 * 359.97438 * 12 11 10 36 36 H 1.08001 * 119.84213 * 180.02562 * 13 12 11 37 37 H 1.07995 * 120.05688 * 179.70037 * 14 13 12 38 38 H 0.97001 * 119.99616 * 179.97438 * 19 18 16 39 39 H 1.08002 * 120.16114 * 359.97438 * 24 11 10 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4651 0.0000 0.0000 3 6 2.1389 1.1671 0.0000 4 8 1.5325 2.2174 0.0005 5 6 3.6459 1.1670 -0.0006 6 6 4.1560 2.6096 0.0002 7 7 5.6210 2.6095 0.0002 8 6 6.2949 3.7767 0.0003 9 8 5.6870 4.8297 0.0009 10 7 7.6427 3.7767 -0.0001 11 6 8.3424 4.9827 -0.1206 12 6 9.5508 5.1555 0.5501 13 6 10.2519 6.3445 0.4375 14 6 9.7581 7.3720 -0.3345 15 6 8.5411 7.2098 -1.0225 16 6 8.0309 8.2583 -1.8227 17 1 6.9645 8.4141 -1.8928 18 6 8.9077 9.0937 -2.5236 19 7 10.1912 8.8400 -2.5264 20 14 8.2457 10.5712 -3.4553 21 1 6.7708 10.6372 -3.2951 22 1 8.8578 11.8118 -2.9154 23 1 8.5822 10.4396 -4.8956 24 6 7.8334 6.0005 -0.9054 25 1 -0.3633 0.5138 -0.8899 26 1 -0.3634 -1.0276 -0.0005 27 1 -0.3632 0.5138 0.8901 28 1 1.9500 -0.8401 -0.0004 29 1 4.0089 0.6535 -0.8909 30 1 4.0097 0.6530 0.8891 31 1 3.7930 3.1228 0.8907 32 1 3.7922 3.1241 -0.8892 33 1 6.1059 1.7694 -0.0006 34 1 8.1277 2.9407 0.0830 35 1 9.9438 4.3568 1.1619 36 1 11.1882 6.4680 0.9614 37 1 10.3059 8.2992 -0.4154 38 1 10.7989 9.4189 -3.0126 39 1 6.8968 5.8672 -1.4265 RHF calculation, no. of doubly occupied orbitals= 54 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001661888562.mol2 39 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 06:38:39 Heat of formation + Delta-G solvation = -76.450387 kcal Electronic energy + Delta-G solvation = -21887.490013 eV Core-core repulsion = 18407.478571 eV Total energy + Delta-G solvation = -3480.011442 eV No. of doubly occupied orbitals = 54 Molecular weight (most abundant/longest-lived isotopes) = 291.137 amu Computer time = 0.56 seconds Orbital eigenvalues (eV) -41.48381 -40.70472 -39.16726 -36.51083 -36.00653 -35.62005 -34.80210 -32.18983 -31.70886 -29.72776 -27.79062 -27.20765 -24.67894 -23.14135 -22.67664 -21.82081 -21.38140 -19.65361 -19.31150 -18.19324 -17.53190 -17.17867 -16.93536 -16.77249 -16.46828 -16.25204 -15.88172 -15.41945 -15.11159 -14.76747 -14.69083 -14.40454 -13.97398 -13.76966 -13.53537 -13.15429 -12.99697 -12.89210 -12.85424 -12.83419 -12.46968 -12.17025 -12.01987 -11.51713 -11.25139 -11.13265 -11.01355 -10.76136 -10.20607 -10.10709 -9.29606 -8.69708 -8.50328 -6.38733 0.93308 1.02354 1.36010 1.45945 1.51554 1.58361 1.59542 2.18615 2.24019 2.36429 2.80383 3.33656 3.63521 3.71967 4.04080 4.08457 4.46362 4.48906 4.55448 4.61234 4.63913 4.85362 4.87541 4.96408 5.05972 5.11704 5.15445 5.19888 5.34746 5.39421 5.43150 5.74788 5.85075 6.06327 6.13432 6.20336 6.39777 6.54156 6.71527 6.96982 7.02509 7.14377 7.26318 7.61421 8.42980 Molecular weight = 291.14amu Principal moments of inertia in cm(-1) A = 0.021066 B = 0.002917 C = 0.002604 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1328.816624 B = 9596.166785 C =10750.787636 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.081 3.919 2 N -0.719 5.719 3 C 0.508 3.492 4 O -0.593 6.593 5 C -0.133 4.133 6 C 0.154 3.846 7 N -0.720 5.720 8 C 0.692 3.308 9 O -0.623 6.623 10 N -0.666 5.666 11 C 0.171 3.829 12 C -0.236 4.236 13 C -0.094 4.094 14 C -0.184 4.184 15 C 0.087 3.913 16 C -0.508 4.508 17 H 0.057 0.943 18 C 0.034 3.966 19 N -0.837 5.837 20 Si 0.983 3.017 21 H -0.269 1.269 22 H -0.259 1.259 23 H -0.262 1.262 24 C -0.228 4.228 25 H 0.044 0.956 26 H 0.114 0.886 27 H 0.046 0.954 28 H 0.423 0.577 29 H 0.137 0.863 30 H 0.140 0.860 31 H 0.046 0.954 32 H 0.041 0.959 33 H 0.419 0.581 34 H 0.421 0.579 35 H 0.138 0.862 36 H 0.128 0.872 37 H 0.101 0.899 38 H 0.286 0.714 39 H 0.080 0.920 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -8.704 -23.643 4.455 25.586 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.063 4.063 2 N -0.372 5.372 3 C 0.295 3.705 4 O -0.474 6.474 5 C -0.173 4.173 6 C 0.029 3.971 7 N -0.379 5.379 8 C 0.392 3.608 9 O -0.502 6.502 10 N -0.315 5.315 11 C 0.077 3.923 12 C -0.257 4.257 13 C -0.113 4.113 14 C -0.204 4.204 15 C 0.084 3.916 16 C -0.539 4.539 17 H 0.075 0.925 18 C -0.179 4.179 19 N -0.465 5.465 20 Si 0.804 3.196 21 H -0.193 1.193 22 H -0.183 1.183 23 H -0.187 1.187 24 C -0.250 4.250 25 H 0.063 0.937 26 H 0.132 0.868 27 H 0.065 0.935 28 H 0.261 0.739 29 H 0.155 0.845 30 H 0.158 0.842 31 H 0.065 0.935 32 H 0.060 0.940 33 H 0.258 0.742 34 H 0.259 0.741 35 H 0.156 0.844 36 H 0.145 0.855 37 H 0.120 0.880 38 H 0.097 0.903 39 H 0.098 0.902 Dipole moment (debyes) X Y Z Total from point charges -9.542 -21.968 4.352 24.343 hybrid contribution 0.115 0.027 -0.565 0.578 sum -9.427 -21.941 3.786 24.179 Atomic orbital electron populations 1.21661 0.79209 1.04261 1.01153 1.45682 1.08205 1.08643 1.74682 1.20946 0.90947 0.83642 0.74990 1.90775 1.71712 1.33548 1.51349 1.21721 0.90587 0.96294 1.08700 1.20724 0.77639 0.97412 1.01306 1.44682 1.06775 1.06546 1.79855 1.16232 0.82006 0.84663 0.77908 1.90985 1.68643 1.32615 1.57963 1.42256 1.04064 1.08898 1.76303 1.17290 0.92895 0.85911 0.96207 1.20530 0.97574 1.00052 1.07574 1.20881 0.99073 0.93134 0.98214 1.21300 0.99004 0.99568 1.00496 1.17847 0.92276 0.91450 0.90015 1.19678 0.93981 1.13303 1.26956 0.92512 1.26625 0.94673 1.00237 0.96327 1.69831 1.04155 1.36614 1.35899 0.85151 0.79035 0.77231 0.78158 1.19342 1.18294 1.18670 1.21061 1.02453 0.95207 1.06269 0.93675 0.86767 0.93535 0.73915 0.84498 0.84171 0.93528 0.94031 0.74241 0.74082 0.84386 0.85459 0.88048 0.90348 0.90177 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.08 0.80 10.70 127.77 1.37 2.17 16 2 N -0.72 -6.88 5.71 -484.53 -2.77 -9.65 16 3 C 0.51 9.13 7.83 87.66 0.69 9.82 16 4 O -0.59 -18.27 15.98 -3.03 -0.05 -18.32 16 5 C -0.13 -1.50 5.81 29.85 0.17 -1.33 16 6 C 0.15 3.79 4.96 86.38 0.43 4.22 16 7 N -0.72 -16.82 5.56 -478.52 -2.66 -19.48 16 8 C 0.69 25.65 8.28 179.05 1.48 27.13 16 9 O -0.62 -31.57 14.13 -3.99 -0.06 -31.62 16 10 N -0.67 -22.87 5.34 -317.33 -1.70 -24.57 16 11 C 0.17 7.81 6.25 38.09 0.24 8.05 16 12 C -0.24 -9.82 9.97 22.58 0.23 -9.60 16 13 C -0.09 -4.31 10.02 22.20 0.22 -4.09 16 14 C -0.18 -10.11 8.62 22.75 0.20 -9.91 16 15 C 0.09 5.18 5.50 -21.31 -0.12 5.06 16 16 C -0.51 -30.90 9.04 23.46 0.21 -30.68 16 17 H 0.06 3.52 7.85 -2.91 -0.02 3.49 16 18 C 0.03 1.86 5.31 85.25 0.45 2.31 16 19 N -0.84 -46.42 10.97 21.82 0.24 -46.18 16 20 Si 0.98 42.36 29.56 68.60 2.03 44.38 16 21 H -0.27 -11.79 7.11 99.48 0.71 -11.08 16 22 H -0.26 -10.42 7.11 99.48 0.71 -9.71 16 23 H -0.26 -10.64 7.11 99.48 0.71 -9.93 16 24 C -0.23 -12.81 8.39 22.85 0.19 -12.62 16 25 H 0.04 0.60 8.14 -2.39 -0.02 0.59 16 26 H 0.11 0.22 8.14 -2.39 -0.02 0.20 16 27 H 0.05 0.61 8.14 -2.39 -0.02 0.59 16 28 H 0.42 0.41 8.83 -92.70 -0.82 -0.41 16 29 H 0.14 0.66 8.14 -2.38 -0.02 0.64 16 30 H 0.14 0.56 8.14 -2.39 -0.02 0.55 16 31 H 0.05 1.42 8.10 -2.38 -0.02 1.40 16 32 H 0.04 1.31 8.10 -2.39 -0.02 1.29 16 33 H 0.42 5.18 8.49 -92.70 -0.79 4.39 16 34 H 0.42 9.69 8.84 -92.70 -0.82 8.87 16 35 H 0.14 4.43 8.06 -2.91 -0.02 4.41 16 36 H 0.13 4.87 8.06 -2.91 -0.02 4.85 16 37 H 0.10 5.80 6.48 -2.91 -0.02 5.79 16 38 H 0.29 14.24 8.30 -92.71 -0.77 13.47 16 39 H 0.08 4.84 6.51 -2.91 -0.02 4.82 16 Total: -1.00 -90.18 337.59 -0.52 -90.70 By element: Atomic # 1 Polarization: 25.54 SS G_CDS: -1.32 Total: 24.23 kcal Atomic # 6 Polarization: -15.24 SS G_CDS: 5.76 Total: -9.48 kcal Atomic # 7 Polarization: -93.00 SS G_CDS: -6.88 Total: -99.88 kcal Atomic # 8 Polarization: -49.84 SS G_CDS: -0.10 Total: -49.95 kcal Atomic # 14 Polarization: 42.36 SS G_CDS: 2.03 Total: 44.38 kcal Total: -90.18 -0.52 -90.70 kcal The number of atoms in the molecule is 39 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001661888562.mol2 39 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 14.252 kcal (2) G-P(sol) polarization free energy of solvation -90.184 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -75.931 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -0.519 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -90.703 kcal (6) G-S(sol) free energy of system = (1) + (5) -76.450 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.56 seconds