Wall clock time and date at job start Tue Mar 31 2020 08:01:27 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31560 * 1 3 3 Si 1.86798 * 120.00296 * 2 1 4 4 H 1.48496 * 109.47048 * 240.00092 * 3 2 1 5 5 H 1.48507 * 109.46707 * 359.97438 * 3 2 1 6 6 H 1.48501 * 109.47248 * 119.99648 * 3 2 1 7 7 C 1.38659 * 120.00104 * 179.97438 * 2 1 3 8 8 H 1.07994 * 120.00427 * 180.02562 * 7 2 1 9 9 O 1.34838 * 119.99657 * 0.02562 * 7 2 1 10 10 C 1.35750 * 116.99807 * 185.05899 * 9 7 2 11 11 C 1.38887 * 120.06774 * 354.46078 * 10 9 7 12 12 C 1.38093 * 119.92815 * 180.02562 * 11 10 9 13 13 C 1.38304 * 120.07178 * 0.02562 * 12 11 10 14 14 C 1.50701 * 119.93266 * 179.97438 * 13 12 11 15 15 N 1.46902 * 109.46725 * 90.00433 * 14 13 12 16 16 C 1.46905 * 110.99762 * 179.97438 * 15 14 13 17 17 C 1.52997 * 109.47278 * 275.00027 * 16 15 14 18 18 C 1.52999 * 109.47024 * 180.02562 * 17 16 15 19 19 C 1.52998 * 109.47166 * 59.99788 * 18 17 16 20 20 O 1.42900 * 109.46805 * 60.00320 * 19 18 17 21 21 C 1.52997 * 109.47323 * 300.00030 * 19 18 17 22 22 C 1.52998 * 109.46896 * 154.99825 * 16 15 14 23 23 C 1.38307 * 120.13923 * 0.25962 * 13 12 11 24 24 C 1.38105 * 120.06147 * 359.44839 * 23 13 12 25 25 H 0.96992 * 120.00155 * 0.02562 * 1 2 3 26 26 H 1.08003 * 120.03351 * 0.02562 * 11 10 9 27 27 H 1.07999 * 119.96394 * 180.02562 * 12 11 10 28 28 H 1.09004 * 109.47064 * 330.00431 * 14 13 12 29 29 H 1.08996 * 109.46995 * 210.00266 * 14 13 12 30 30 H 1.00903 * 111.00028 * 303.95103 * 15 14 13 31 31 H 1.09006 * 109.47026 * 35.00510 * 16 15 14 32 32 H 1.08997 * 109.47301 * 300.00084 * 17 16 15 33 33 H 1.08999 * 109.46643 * 60.00282 * 17 16 15 34 34 H 1.09010 * 109.47190 * 299.99839 * 18 17 16 35 35 H 1.09000 * 109.47106 * 180.02562 * 18 17 16 36 36 H 1.09000 * 109.46650 * 179.97438 * 19 18 17 37 37 H 0.96698 * 114.00424 * 60.00081 * 20 19 18 38 38 H 1.08997 * 109.47301 * 299.99974 * 21 19 18 39 39 H 1.08999 * 109.46992 * 180.02562 * 21 19 18 40 40 H 1.09000 * 109.47793 * 300.00564 * 22 16 15 41 41 H 1.09000 * 109.47213 * 59.99985 * 22 16 15 42 42 H 1.07994 * 119.96598 * 179.70247 * 23 13 12 43 43 H 1.07999 * 120.02925 * 180.28229 * 24 23 13 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3156 0.0000 0.0000 3 14 2.2497 1.6177 0.0000 4 1 3.1034 1.6963 -1.2125 5 1 1.2846 2.7464 -0.0006 6 1 3.1034 1.6964 1.2125 7 6 2.0089 -1.2008 0.0005 8 1 3.0889 -1.2009 0.0010 9 8 1.3347 -2.3685 0.0005 10 6 2.0699 -3.5046 0.1077 11 6 3.4572 -3.4395 0.0953 12 6 4.2023 -4.5971 0.2040 13 6 3.5685 -5.8204 0.3246 14 6 4.3846 -7.0818 0.4425 15 7 4.6559 -7.3588 1.8594 16 6 5.4509 -8.5846 2.0133 17 6 4.5198 -9.7986 2.0220 18 6 5.3478 -11.0751 2.1829 19 6 6.1230 -11.0174 3.5007 20 8 5.2040 -10.9053 4.5893 21 6 7.0540 -9.8034 3.4921 22 6 6.2265 -8.5272 3.3309 23 6 2.1871 -5.8892 0.3315 24 6 1.4365 -4.7345 0.2292 25 1 -0.4850 0.8400 -0.0004 26 1 3.9527 -2.4845 0.0006 27 1 5.2810 -4.5471 0.1947 28 1 5.3273 -6.9557 -0.0901 29 1 3.8310 -7.9146 0.0089 30 1 5.1116 -6.5741 2.3005 31 1 6.1516 -8.6698 1.1827 32 1 3.8192 -9.7133 2.8526 33 1 3.9674 -9.8394 1.0833 34 1 6.0488 -11.1607 1.3525 35 1 4.6845 -11.9401 2.1886 36 1 6.7124 -11.9271 3.6155 37 1 4.5818 -11.6425 4.6563 38 1 7.7549 -9.8889 2.6618 39 1 7.6066 -9.7626 4.4308 40 1 6.8897 -7.6623 3.3249 41 1 5.5259 -8.4418 4.1615 42 1 1.6951 -6.8464 0.4210 43 1 0.3579 -4.7884 0.2391 RHF calculation, no. of doubly occupied orbitals= 55 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000034991251.mol2 43 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 08:01:27 Heat of formation + Delta-G solvation = -69.178203 kcal Electronic energy + Delta-G solvation = -22518.360080 eV Core-core repulsion = 19142.204327 eV Total energy + Delta-G solvation = -3376.155753 eV No. of doubly occupied orbitals = 55 Molecular weight (most abundant/longest-lived isotopes) = 291.162 amu Computer time = 1.94 seconds Orbital eigenvalues (eV) -39.59395 -38.96750 -37.06742 -35.96183 -33.63144 -32.24211 -31.05477 -30.20375 -30.03488 -27.68735 -25.47752 -24.06214 -22.91347 -21.91736 -21.60325 -20.37408 -19.87403 -17.94929 -17.09182 -16.99040 -16.19477 -15.48238 -15.05398 -14.88181 -14.71202 -14.50328 -14.09093 -13.65834 -13.51354 -13.50015 -13.04727 -12.81432 -12.65255 -12.55042 -12.34242 -12.00190 -11.93060 -11.57555 -11.55387 -11.25365 -11.14385 -10.76401 -10.70581 -10.62853 -10.43093 -10.41096 -10.27822 -9.97012 -9.30923 -8.81015 -8.28732 -8.12666 -7.14703 -6.42826 -4.01768 2.26440 2.32565 3.14083 3.15304 3.18098 3.94520 3.98474 4.21070 4.47442 4.52087 4.67717 4.83251 4.93558 5.06194 5.12523 5.19743 5.27167 5.28842 5.32487 5.41891 5.47786 5.48798 5.59034 5.72949 5.74148 5.77598 5.87815 5.98112 6.02017 6.04722 6.16043 6.25018 6.33525 6.46849 6.74821 6.94211 7.06839 7.19371 7.31027 7.40102 7.40950 7.46913 7.56678 7.87024 8.02242 9.02703 9.73510 10.75257 Molecular weight = 291.16amu Principal moments of inertia in cm(-1) A = 0.034487 B = 0.002566 C = 0.002497 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 811.715936 B =10910.557867 C =11212.228015 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.863 5.863 2 C 0.039 3.961 3 Si 0.941 3.059 4 H -0.270 1.270 5 H -0.278 1.278 6 H -0.270 1.270 7 C -0.392 4.392 8 H 0.091 0.909 9 O -0.178 6.178 10 C 0.156 3.844 11 C -0.235 4.235 12 C -0.066 4.066 13 C -0.184 4.184 14 C 0.119 3.881 15 N -0.681 5.681 16 C 0.089 3.911 17 C -0.102 4.102 18 C -0.153 4.153 19 C 0.105 3.895 20 O -0.561 6.561 21 C -0.109 4.109 22 C -0.118 4.118 23 C -0.052 4.052 24 C -0.194 4.194 25 H 0.270 0.730 26 H 0.125 0.875 27 H 0.102 0.898 28 H 0.025 0.975 29 H 0.068 0.932 30 H 0.342 0.658 31 H 0.036 0.964 32 H 0.076 0.924 33 H 0.059 0.941 34 H 0.068 0.932 35 H 0.064 0.936 36 H 0.050 0.950 37 H 0.375 0.625 38 H 0.072 0.928 39 H 0.069 0.931 40 H 0.058 0.942 41 H 0.081 0.919 42 H 0.111 0.889 43 H 0.116 0.884 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 12.752 -20.059 4.352 24.165 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.498 5.498 2 C -0.165 4.165 3 Si 0.765 3.235 4 H -0.195 1.195 5 H -0.203 1.203 6 H -0.195 1.195 7 C -0.468 4.468 8 H 0.108 0.892 9 O -0.082 6.082 10 C 0.102 3.898 11 C -0.254 4.254 12 C -0.085 4.085 13 C -0.185 4.185 14 C -0.009 4.009 15 N -0.312 5.312 16 C -0.021 4.021 17 C -0.140 4.140 18 C -0.191 4.191 19 C 0.046 3.954 20 O -0.366 6.366 21 C -0.147 4.147 22 C -0.156 4.156 23 C -0.071 4.071 24 C -0.214 4.214 25 H 0.080 0.920 26 H 0.143 0.857 27 H 0.120 0.880 28 H 0.043 0.957 29 H 0.087 0.913 30 H 0.161 0.839 31 H 0.054 0.946 32 H 0.094 0.906 33 H 0.077 0.923 34 H 0.086 0.914 35 H 0.083 0.917 36 H 0.068 0.932 37 H 0.221 0.779 38 H 0.091 0.909 39 H 0.087 0.913 40 H 0.077 0.923 41 H 0.099 0.901 42 H 0.129 0.871 43 H 0.134 0.866 Dipole moment (debyes) X Y Z Total from point charges 12.047 -19.583 4.518 23.432 hybrid contribution 1.104 0.627 -0.495 1.363 sum 13.152 -18.957 4.023 23.420 Atomic orbital electron populations 1.70028 1.05949 1.27749 1.46107 1.25284 0.95834 0.98807 0.96585 0.85790 0.78700 0.79831 0.79151 1.19548 1.20278 1.19506 1.21273 0.91744 0.80880 1.52944 0.89172 1.83982 1.34338 1.11449 1.78398 1.19399 0.90280 0.88053 0.92086 1.21112 0.93830 0.98768 1.11674 1.20580 0.97979 0.91971 0.97980 1.19131 0.93712 0.93469 1.12177 1.20653 0.96833 0.95481 0.87933 1.60552 1.50469 1.05297 1.14932 1.21503 0.93159 0.91225 0.96234 1.21418 0.97944 0.92197 1.02475 1.22266 0.99831 0.98825 0.98162 1.21761 0.90150 0.97553 0.85916 1.86548 1.49486 1.50070 1.50514 1.21495 0.96993 0.94024 1.02211 1.21613 0.98775 0.96749 0.98425 1.20461 0.92854 0.96638 0.97121 1.20225 0.99567 0.90357 1.11218 0.91985 0.85684 0.87997 0.95676 0.91311 0.83920 0.94582 0.90553 0.92271 0.91368 0.91734 0.93170 0.77857 0.90939 0.91258 0.92308 0.90051 0.87112 0.86590 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.86 -25.58 13.67 55.48 0.76 -24.82 16 2 C 0.04 1.09 5.49 -17.51 -0.10 0.99 16 3 Si 0.94 20.69 29.55 -169.99 -5.02 15.66 16 4 H -0.27 -5.75 7.11 56.52 0.40 -5.34 16 5 H -0.28 -5.97 7.11 56.52 0.40 -5.56 16 6 H -0.27 -5.76 7.11 56.52 0.40 -5.35 16 7 C -0.39 -11.09 9.49 30.89 0.29 -10.79 16 8 H 0.09 2.35 5.20 -52.49 -0.27 2.08 16 9 O -0.18 -5.17 9.76 0.03 0.00 -5.17 16 10 C 0.16 3.83 6.65 -39.11 -0.26 3.57 16 11 C -0.23 -5.16 9.17 -39.39 -0.36 -5.52 16 12 C -0.07 -1.22 9.69 -39.61 -0.38 -1.61 16 13 C -0.18 -3.18 5.40 -104.57 -0.56 -3.74 16 14 C 0.12 1.65 5.61 -4.97 -0.03 1.62 16 15 N -0.68 -8.86 6.30 -107.99 -0.68 -9.54 16 16 C 0.09 0.94 2.49 -67.71 -0.17 0.77 16 17 C -0.10 -1.02 5.28 -26.73 -0.14 -1.16 16 18 C -0.15 -1.14 5.64 -26.73 -0.15 -1.29 16 19 C 0.11 0.80 3.77 -26.73 -0.10 0.70 16 20 O -0.56 -4.88 11.97 -35.23 -0.42 -5.30 16 21 C -0.11 -0.89 5.66 -26.76 -0.15 -1.04 16 22 C -0.12 -1.17 5.05 -26.76 -0.14 -1.30 16 23 C -0.05 -0.96 9.69 -39.60 -0.38 -1.34 16 24 C -0.19 -4.21 9.99 -39.40 -0.39 -4.61 16 25 H 0.27 7.35 8.31 -40.82 -0.34 7.01 16 26 H 0.13 2.75 5.64 -52.48 -0.30 2.46 16 27 H 0.10 1.61 8.06 -52.49 -0.42 1.18 16 28 H 0.03 0.33 8.00 -51.93 -0.42 -0.08 16 29 H 0.07 0.92 7.37 -51.93 -0.38 0.53 16 30 H 0.34 4.51 8.34 -39.29 -0.33 4.18 16 31 H 0.04 0.38 7.80 -51.93 -0.41 -0.02 16 32 H 0.08 0.88 7.68 -51.93 -0.40 0.48 16 33 H 0.06 0.62 7.45 -51.93 -0.39 0.23 16 34 H 0.07 0.48 8.14 -51.92 -0.42 0.06 16 35 H 0.06 0.41 8.14 -51.93 -0.42 -0.01 16 36 H 0.05 0.32 8.14 -51.93 -0.42 -0.11 16 37 H 0.37 1.85 9.08 45.56 0.41 2.27 16 38 H 0.07 0.51 8.14 -51.93 -0.42 0.08 16 39 H 0.07 0.56 8.14 -51.93 -0.42 0.13 16 40 H 0.06 0.56 8.12 -51.93 -0.42 0.13 16 41 H 0.08 0.96 7.68 -51.93 -0.40 0.56 16 42 H 0.11 1.78 8.06 -52.49 -0.42 1.35 16 43 H 0.12 2.44 8.06 -52.49 -0.42 2.01 16 LS Contribution 347.20 15.07 5.23 5.23 Total: -1.00 -31.45 347.20 -8.97 -40.42 By element: Atomic # 1 Polarization: 14.07 SS G_CDS: -5.81 Total: 8.26 kcal Atomic # 6 Polarization: -21.73 SS G_CDS: -3.03 Total: -24.76 kcal Atomic # 7 Polarization: -34.44 SS G_CDS: 0.08 Total: -34.36 kcal Atomic # 8 Polarization: -10.05 SS G_CDS: -0.42 Total: -10.47 kcal Atomic # 14 Polarization: 20.69 SS G_CDS: -5.02 Total: 15.66 kcal Total LS contribution 5.23 Total: 5.23 kcal Total: -31.45 -8.97 -40.42 kcal The number of atoms in the molecule is 43 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000034991251.mol2 43 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -28.755 kcal (2) G-P(sol) polarization free energy of solvation -31.454 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -60.209 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.970 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -40.423 kcal (6) G-S(sol) free energy of system = (1) + (5) -69.178 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.94 seconds