Wall clock time and date at job start Tue Mar 31 2020 08:01:22 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31560 * 1 3 3 Si 1.86798 * 120.00296 * 2 1 4 4 H 1.48496 * 109.47048 * 240.00092 * 3 2 1 5 5 H 1.48507 * 109.46707 * 359.97438 * 3 2 1 6 6 H 1.48501 * 109.47248 * 119.99648 * 3 2 1 7 7 C 1.38659 * 120.00104 * 179.97438 * 2 1 3 8 8 H 1.07994 * 120.00427 * 180.02562 * 7 2 1 9 9 O 1.34838 * 119.99657 * 0.02562 * 7 2 1 10 10 C 1.35750 * 116.99807 * 185.05899 * 9 7 2 11 11 C 1.38887 * 120.06774 * 354.46078 * 10 9 7 12 12 C 1.38093 * 119.92815 * 180.02562 * 11 10 9 13 13 C 1.38304 * 120.07178 * 0.02562 * 12 11 10 14 14 C 1.50701 * 119.93266 * 179.97438 * 13 12 11 15 15 N 1.46902 * 109.46725 * 90.00433 * 14 13 12 16 16 C 1.46905 * 110.99762 * 179.97438 * 15 14 13 17 17 C 1.52997 * 109.47278 * 275.00027 * 16 15 14 18 18 C 1.52999 * 109.47024 * 180.02562 * 17 16 15 19 19 C 1.52998 * 109.47166 * 59.99788 * 18 17 16 20 20 O 1.42900 * 109.46805 * 60.00320 * 19 18 17 21 21 C 1.52997 * 109.47323 * 300.00030 * 19 18 17 22 22 C 1.52998 * 109.46896 * 154.99825 * 16 15 14 23 23 C 1.38307 * 120.13923 * 0.25962 * 13 12 11 24 24 C 1.38105 * 120.06147 * 359.44839 * 23 13 12 25 25 H 0.96992 * 120.00155 * 0.02562 * 1 2 3 26 26 H 1.08003 * 120.03351 * 0.02562 * 11 10 9 27 27 H 1.07999 * 119.96394 * 180.02562 * 12 11 10 28 28 H 1.09004 * 109.47064 * 330.00431 * 14 13 12 29 29 H 1.08996 * 109.46995 * 210.00266 * 14 13 12 30 30 H 1.00903 * 111.00028 * 303.95103 * 15 14 13 31 31 H 1.09006 * 109.47026 * 35.00510 * 16 15 14 32 32 H 1.08997 * 109.47301 * 300.00084 * 17 16 15 33 33 H 1.08999 * 109.46643 * 60.00282 * 17 16 15 34 34 H 1.09010 * 109.47190 * 299.99839 * 18 17 16 35 35 H 1.09000 * 109.47106 * 180.02562 * 18 17 16 36 36 H 1.09000 * 109.46650 * 179.97438 * 19 18 17 37 37 H 0.96698 * 114.00424 * 60.00081 * 20 19 18 38 38 H 1.08997 * 109.47301 * 299.99974 * 21 19 18 39 39 H 1.08999 * 109.46992 * 180.02562 * 21 19 18 40 40 H 1.09000 * 109.47793 * 300.00564 * 22 16 15 41 41 H 1.09000 * 109.47213 * 59.99985 * 22 16 15 42 42 H 1.07994 * 119.96598 * 179.70247 * 23 13 12 43 43 H 1.07999 * 120.02925 * 180.28229 * 24 23 13 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3156 0.0000 0.0000 3 14 2.2497 1.6177 0.0000 4 1 3.1034 1.6963 -1.2125 5 1 1.2846 2.7464 -0.0006 6 1 3.1034 1.6964 1.2125 7 6 2.0089 -1.2008 0.0005 8 1 3.0889 -1.2009 0.0010 9 8 1.3347 -2.3685 0.0005 10 6 2.0699 -3.5046 0.1077 11 6 3.4572 -3.4395 0.0953 12 6 4.2023 -4.5971 0.2040 13 6 3.5685 -5.8204 0.3246 14 6 4.3846 -7.0818 0.4425 15 7 4.6559 -7.3588 1.8594 16 6 5.4509 -8.5846 2.0133 17 6 4.5198 -9.7986 2.0220 18 6 5.3478 -11.0751 2.1829 19 6 6.1230 -11.0174 3.5007 20 8 5.2040 -10.9053 4.5893 21 6 7.0540 -9.8034 3.4921 22 6 6.2265 -8.5272 3.3309 23 6 2.1871 -5.8892 0.3315 24 6 1.4365 -4.7345 0.2292 25 1 -0.4850 0.8400 -0.0004 26 1 3.9527 -2.4845 0.0006 27 1 5.2810 -4.5471 0.1947 28 1 5.3273 -6.9557 -0.0901 29 1 3.8310 -7.9146 0.0089 30 1 5.1116 -6.5741 2.3005 31 1 6.1516 -8.6698 1.1827 32 1 3.8192 -9.7133 2.8526 33 1 3.9674 -9.8394 1.0833 34 1 6.0488 -11.1607 1.3525 35 1 4.6845 -11.9401 2.1886 36 1 6.7124 -11.9271 3.6155 37 1 4.5818 -11.6425 4.6563 38 1 7.7549 -9.8889 2.6618 39 1 7.6066 -9.7626 4.4308 40 1 6.8897 -7.6623 3.3249 41 1 5.5259 -8.4418 4.1615 42 1 1.6951 -6.8464 0.4210 43 1 0.3579 -4.7884 0.2391 RHF calculation, no. of doubly occupied orbitals= 55 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000034991251.mol2 43 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 08:01:22 Heat of formation + Delta-G solvation = -91.510529 kcal Electronic energy + Delta-G solvation = -22519.328482 eV Core-core repulsion = 19142.204327 eV Total energy + Delta-G solvation = -3377.124155 eV No. of doubly occupied orbitals = 55 Molecular weight (most abundant/longest-lived isotopes) = 291.162 amu Computer time = 0.64 seconds Orbital eigenvalues (eV) -40.82232 -40.20329 -38.57910 -37.00601 -34.68866 -34.13175 -31.79719 -31.72885 -31.35521 -28.79964 -27.38884 -25.34232 -23.69481 -23.55205 -22.43255 -21.85363 -20.61802 -19.83536 -18.84780 -17.70535 -17.08345 -16.57722 -16.36050 -16.21715 -15.92935 -15.66603 -15.49889 -15.42914 -15.13194 -14.41670 -14.29153 -14.00349 -13.83578 -13.72464 -13.51848 -13.12077 -12.95207 -12.93208 -12.75457 -12.47807 -12.32671 -12.17288 -12.15380 -11.98123 -11.77019 -11.36193 -11.16666 -10.96440 -10.79093 -10.58825 -9.77103 -9.28614 -8.89409 -8.46783 -6.15212 0.61187 0.68633 1.34622 1.45615 1.51208 2.18105 2.78612 3.09850 3.37446 3.53286 3.54811 3.84210 3.86592 4.04822 4.07830 4.16876 4.22454 4.25571 4.37739 4.49981 4.53473 4.57285 4.62875 4.63612 4.74735 4.81146 4.82140 4.98396 5.09212 5.10220 5.14903 5.16827 5.30421 5.31962 5.33405 5.39062 5.54062 5.59862 5.71894 5.82665 6.03160 6.19011 6.28862 6.51826 6.97674 6.98947 7.79082 8.76451 Molecular weight = 291.16amu Principal moments of inertia in cm(-1) A = 0.034487 B = 0.002566 C = 0.002497 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 811.715936 B =10910.557867 C =11212.228015 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.922 5.922 2 C -0.024 4.024 3 Si 1.019 2.981 4 H -0.257 1.257 5 H -0.272 1.272 6 H -0.258 1.258 7 C -0.415 4.415 8 H 0.102 0.898 9 O -0.233 6.233 10 C 0.114 3.886 11 C -0.243 4.243 12 C -0.062 4.062 13 C -0.157 4.157 14 C 0.125 3.875 15 N -0.693 5.693 16 C 0.091 3.909 17 C -0.101 4.101 18 C -0.146 4.146 19 C 0.103 3.897 20 O -0.583 6.583 21 C -0.111 4.111 22 C -0.114 4.114 23 C -0.048 4.048 24 C -0.207 4.207 25 H 0.273 0.727 26 H 0.119 0.881 27 H 0.138 0.862 28 H 0.044 0.956 29 H 0.081 0.919 30 H 0.341 0.659 31 H 0.047 0.953 32 H 0.056 0.944 33 H 0.055 0.945 34 H 0.079 0.921 35 H 0.077 0.923 36 H 0.069 0.931 37 H 0.389 0.611 38 H 0.089 0.911 39 H 0.067 0.933 40 H 0.061 0.939 41 H 0.057 0.943 42 H 0.142 0.858 43 H 0.111 0.889 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 15.819 -22.351 4.300 27.718 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.560 5.560 2 C -0.221 4.221 3 Si 0.838 3.162 4 H -0.181 1.181 5 H -0.196 1.196 6 H -0.182 1.182 7 C -0.491 4.491 8 H 0.119 0.881 9 O -0.140 6.140 10 C 0.063 3.937 11 C -0.262 4.262 12 C -0.081 4.081 13 C -0.158 4.158 14 C -0.004 4.004 15 N -0.324 5.324 16 C -0.018 4.018 17 C -0.139 4.139 18 C -0.184 4.184 19 C 0.044 3.956 20 O -0.391 6.391 21 C -0.149 4.149 22 C -0.152 4.152 23 C -0.067 4.067 24 C -0.226 4.226 25 H 0.082 0.918 26 H 0.136 0.864 27 H 0.156 0.844 28 H 0.062 0.938 29 H 0.099 0.901 30 H 0.159 0.841 31 H 0.065 0.935 32 H 0.075 0.925 33 H 0.074 0.926 34 H 0.097 0.903 35 H 0.096 0.904 36 H 0.087 0.913 37 H 0.238 0.762 38 H 0.107 0.893 39 H 0.086 0.914 40 H 0.080 0.920 41 H 0.076 0.924 42 H 0.159 0.841 43 H 0.129 0.871 Dipole moment (debyes) X Y Z Total from point charges 15.143 -21.949 4.471 27.038 hybrid contribution 0.258 0.965 -0.425 1.086 sum 15.400 -20.984 4.045 26.341 Atomic orbital electron populations 1.70181 1.08059 1.28872 1.48895 1.26612 0.96860 1.02784 0.95854 0.84645 0.77390 0.74219 0.79934 1.18077 1.19603 1.18188 1.21791 0.92513 0.81477 1.53302 0.88120 1.83945 1.35988 1.12608 1.81471 1.19938 0.91685 0.87894 0.94163 1.21230 0.93018 1.00025 1.11911 1.20942 0.99661 0.90986 0.96497 1.19643 0.93629 0.94798 1.07774 1.20634 0.97134 0.93659 0.88943 1.60518 1.51628 1.06176 1.14108 1.21555 0.93225 0.90194 0.96842 1.21389 0.97847 0.93265 1.01404 1.22230 0.99897 0.97855 0.98460 1.21848 0.90098 0.97981 0.85644 1.86516 1.50195 1.51317 1.51073 1.21545 0.97134 0.93315 1.02870 1.21548 0.98454 0.98046 0.97126 1.20829 0.93533 0.96616 0.95701 1.20462 0.99883 0.90691 1.11561 0.91832 0.86365 0.84402 0.93841 0.90078 0.84095 0.93496 0.92541 0.92608 0.90254 0.90449 0.91338 0.76226 0.89281 0.91388 0.92032 0.92448 0.84074 0.87121 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.92 -57.53 13.67 21.61 0.30 -57.23 16 2 C -0.02 -1.37 5.49 84.83 0.47 -0.91 16 3 Si 1.02 43.37 29.55 68.60 2.03 45.40 16 4 H -0.26 -10.20 7.11 99.48 0.71 -9.50 16 5 H -0.27 -11.10 7.11 99.48 0.71 -10.39 16 6 H -0.26 -10.30 7.11 99.48 0.71 -9.59 16 7 C -0.41 -24.60 9.49 67.92 0.64 -23.96 16 8 H 0.10 5.46 5.20 -2.91 -0.02 5.45 16 9 O -0.23 -14.40 9.76 -22.82 -0.22 -14.62 16 10 C 0.11 5.81 6.65 22.58 0.15 5.96 16 11 C -0.24 -10.74 9.17 22.39 0.21 -10.53 16 12 C -0.06 -2.16 9.69 22.25 0.22 -1.94 16 13 C -0.16 -4.99 5.40 -19.83 -0.11 -5.10 16 14 C 0.12 2.94 5.61 85.56 0.48 3.42 16 15 N -0.69 -15.89 6.30 -495.56 -3.12 -19.01 16 16 C 0.09 1.66 2.49 44.91 0.11 1.77 16 17 C -0.10 -1.74 5.28 30.59 0.16 -1.57 16 18 C -0.15 -1.70 5.64 30.59 0.17 -1.52 16 19 C 0.10 1.26 3.77 30.59 0.12 1.38 16 20 O -0.58 -9.05 11.97 -148.98 -1.78 -10.83 16 21 C -0.11 -1.49 5.66 30.58 0.17 -1.32 16 22 C -0.11 -2.00 5.05 30.58 0.15 -1.85 16 23 C -0.05 -1.70 9.69 22.25 0.22 -1.48 16 24 C -0.21 -9.15 9.99 22.39 0.22 -8.93 16 25 H 0.27 15.59 8.31 -92.71 -0.77 14.82 16 26 H 0.12 5.30 5.64 -2.91 -0.02 5.29 16 27 H 0.14 3.80 8.06 -2.91 -0.02 3.77 16 28 H 0.04 0.92 8.00 -2.38 -0.02 0.90 16 29 H 0.08 1.79 7.37 -2.39 -0.02 1.77 16 30 H 0.34 8.01 8.34 -89.69 -0.75 7.26 16 31 H 0.05 0.79 7.80 -2.38 -0.02 0.77 16 32 H 0.06 1.20 7.68 -2.39 -0.02 1.18 16 33 H 0.06 0.99 7.45 -2.39 -0.02 0.97 16 34 H 0.08 0.78 8.14 -2.38 -0.02 0.76 16 35 H 0.08 0.72 8.14 -2.39 -0.02 0.70 16 36 H 0.07 0.62 8.14 -2.39 -0.02 0.60 16 37 H 0.39 3.12 9.08 -74.06 -0.67 2.45 16 38 H 0.09 0.91 8.14 -2.39 -0.02 0.89 16 39 H 0.07 0.94 8.14 -2.39 -0.02 0.92 16 40 H 0.06 1.03 8.12 -2.39 -0.02 1.01 16 41 H 0.06 1.29 7.68 -2.39 -0.02 1.27 16 42 H 0.14 4.11 8.06 -2.91 -0.02 4.08 16 43 H 0.11 4.88 8.06 -2.91 -0.02 4.86 16 Total: -1.00 -72.83 347.20 0.18 -72.65 By element: Atomic # 1 Polarization: 30.62 SS G_CDS: -0.40 Total: 30.22 kcal Atomic # 6 Polarization: -49.97 SS G_CDS: 3.38 Total: -46.59 kcal Atomic # 7 Polarization: -73.41 SS G_CDS: -2.83 Total: -76.24 kcal Atomic # 8 Polarization: -23.45 SS G_CDS: -2.01 Total: -25.45 kcal Atomic # 14 Polarization: 43.37 SS G_CDS: 2.03 Total: 45.40 kcal Total: -72.83 0.18 -72.65 kcal The number of atoms in the molecule is 43 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000034991251.mol2 43 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -18.860 kcal (2) G-P(sol) polarization free energy of solvation -72.830 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -91.691 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 0.180 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -72.650 kcal (6) G-S(sol) free energy of system = (1) + (5) -91.511 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.64 seconds