Wall clock time and date at job start Tue Mar 31 2020 08:19:56 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31519 * 1 3 3 Si 1.86800 * 120.00005 * 2 1 4 4 H 1.48499 * 109.46616 * 179.97438 * 3 2 1 5 5 H 1.48501 * 109.47104 * 299.99522 * 3 2 1 6 6 H 1.48489 * 109.47200 * 59.99802 * 3 2 1 7 7 C 1.37876 * 119.99563 * 179.97438 * 2 1 3 8 8 H 1.08001 * 119.99683 * 179.97438 * 7 2 1 9 9 C 1.50697 * 120.00428 * 0.02562 * 7 2 1 10 10 C 1.52997 * 109.47466 * 179.97438 * 9 7 2 11 11 O 1.42898 * 109.47319 * 180.02562 * 10 9 7 12 12 C 1.35897 * 117.00481 * 180.02562 * 11 10 9 13 13 C 1.38821 * 120.01275 * 359.72205 * 12 11 10 14 14 C 1.38173 * 120.08789 * 179.72138 * 13 12 11 15 15 C 1.38157 * 120.13180 * 0.55631 * 14 13 12 16 16 C 1.38929 * 120.03217 * 359.71781 * 15 14 13 17 17 N 1.39664 * 120.04617 * 180.02562 * 16 15 14 18 18 C 1.46504 * 119.99630 * 359.97438 * 17 16 15 19 19 C 1.53176 * 109.54399 * 274.81588 * 18 17 16 20 20 C 1.53101 * 109.15969 * 183.24169 * 19 18 17 21 21 O 1.42908 * 109.48377 * 57.47940 * 20 19 18 22 22 C 1.42903 * 114.09633 * 298.88614 * 21 20 19 23 23 C 1.53097 * 109.41297 * 61.16382 * 22 21 20 24 24 C 1.38564 * 120.02346 * 180.02562 * 12 11 10 25 25 H 0.97002 * 119.99731 * 0.02562 * 1 2 3 26 26 H 1.09002 * 109.47120 * 59.99671 * 9 7 2 27 27 H 1.08998 * 109.46862 * 300.00473 * 9 7 2 28 28 H 1.09002 * 109.47153 * 59.99773 * 10 9 7 29 29 H 1.09001 * 109.46832 * 299.99964 * 10 9 7 30 30 H 1.08000 * 119.95252 * 0.02562 * 13 12 11 31 31 H 1.08007 * 119.93164 * 180.27734 * 14 13 12 32 32 H 1.07999 * 119.98069 * 179.74516 * 15 14 13 33 33 H 0.97000 * 120.00446 * 179.97438 * 17 16 15 34 34 H 1.08999 * 109.54700 * 35.00037 * 18 17 16 35 35 H 1.09001 * 109.52809 * 303.06226 * 19 18 17 36 36 H 1.09003 * 109.51761 * 63.25312 * 19 18 17 37 37 H 1.09004 * 109.40853 * 297.49870 * 20 19 18 38 38 H 1.09000 * 109.49768 * 177.51323 * 20 19 18 39 39 H 1.08995 * 109.48502 * 301.17642 * 22 21 20 40 40 H 1.09000 * 109.48790 * 181.14891 * 22 21 20 41 41 H 1.09000 * 109.51780 * 182.48580 * 23 22 21 42 42 H 1.08991 * 109.52418 * 62.29037 * 23 22 21 43 43 H 1.07998 * 120.06257 * 359.97421 * 24 12 11 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3152 0.0000 0.0000 3 14 2.2492 1.6177 0.0000 4 1 3.7092 1.3463 0.0006 5 1 1.8905 2.3964 -1.2126 6 1 1.8904 2.3964 1.2124 7 6 2.0045 -1.1941 0.0005 8 1 3.0845 -1.1941 0.0001 9 6 1.2510 -2.4992 0.0005 10 6 2.2451 -3.6621 0.0005 11 8 1.5306 -4.8996 -0.0001 12 6 2.2706 -6.0395 0.0004 13 6 3.6570 -5.9673 -0.0044 14 6 4.4109 -7.1252 0.0019 15 6 3.7880 -8.3583 0.0013 16 6 2.4010 -8.4367 0.0004 17 7 1.7710 -9.6832 0.0004 18 6 2.5730 -10.9092 0.0009 19 6 2.9554 -11.2719 -1.4374 20 6 3.7234 -12.5963 -1.4344 21 8 2.9201 -13.6119 -0.8298 22 6 2.5731 -13.3482 0.5312 23 6 1.7568 -12.0552 0.6068 24 6 1.6419 -7.2743 -0.0007 25 1 -0.4850 0.8401 -0.0004 26 1 0.6246 -2.5571 -0.8897 27 1 0.6240 -2.5566 0.8902 28 1 2.8718 -3.6044 0.8905 29 1 2.8718 -3.6044 -0.8895 30 1 4.1468 -5.0047 -0.0081 31 1 5.4894 -7.0660 0.0026 32 1 4.3798 -9.2618 0.0021 33 1 0.8025 -9.7372 0.0002 34 1 3.4766 -10.7537 0.5903 35 1 2.0525 -11.3773 -2.0389 36 1 3.5837 -10.4859 -1.8564 37 1 4.6471 -12.4781 -0.8677 38 1 3.9599 -12.8821 -2.4593 39 1 3.4816 -13.2398 1.1235 40 1 1.9807 -14.1754 0.9222 41 1 1.5289 -11.8289 1.6484 42 1 0.8291 -12.1768 0.0480 43 1 0.5635 -7.3323 -0.0015 RHF calculation, no. of doubly occupied orbitals= 55 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000037777460.mol2 43 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 08:19:56 Heat of formation + Delta-G solvation = -73.188689 kcal Electronic energy + Delta-G solvation = -22283.011558 eV Core-core repulsion = 18906.681898 eV Total energy + Delta-G solvation = -3376.329660 eV No. of doubly occupied orbitals = 55 Molecular weight (most abundant/longest-lived isotopes) = 291.162 amu Computer time = 0.52 seconds Orbital eigenvalues (eV) -40.19862 -39.43449 -37.66044 -35.50789 -33.35010 -32.29554 -31.56393 -30.74868 -29.24219 -28.29830 -25.20059 -24.43188 -24.03625 -22.57949 -21.74911 -20.54607 -20.28723 -18.02446 -17.04718 -16.44316 -16.38925 -15.94591 -15.49770 -15.42930 -15.26547 -15.12253 -14.85468 -14.47296 -14.23777 -13.51427 -13.37106 -13.07409 -12.72815 -12.68930 -12.31571 -12.13115 -11.78211 -11.74947 -11.48421 -11.26214 -11.12957 -10.92612 -10.79477 -10.70476 -10.44011 -10.09533 -9.97692 -9.72166 -9.63164 -9.26722 -8.44425 -7.96352 -7.35672 -6.09359 -4.13662 1.70124 1.85162 3.12375 3.27249 3.34360 3.38199 3.47265 3.99416 4.08712 4.25658 4.42276 4.43283 4.53042 4.68035 4.77355 4.96866 5.04096 5.10391 5.22121 5.25177 5.27144 5.34588 5.40632 5.53700 5.58200 5.59386 5.63864 5.75500 5.87027 6.08611 6.09441 6.10909 6.39148 6.61945 6.66057 6.74324 6.75757 6.88209 7.35942 7.52884 7.64436 7.66253 7.84603 8.11928 8.25985 8.92270 9.50554 11.02320 Molecular weight = 291.16amu Principal moments of inertia in cm(-1) A = 0.049936 B = 0.002287 C = 0.002231 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 560.583245 B =12240.602071 C =12544.958643 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.890 5.890 2 C 0.059 3.941 3 Si 0.899 3.101 4 H -0.272 1.272 5 H -0.282 1.282 6 H -0.283 1.283 7 C -0.525 4.525 8 H 0.059 0.941 9 C 0.024 3.976 10 C 0.066 3.934 11 O -0.316 6.316 12 C 0.188 3.812 13 C -0.264 4.264 14 C -0.037 4.037 15 C -0.246 4.246 16 C 0.247 3.753 17 N -0.744 5.744 18 C 0.154 3.846 19 C -0.173 4.173 20 C 0.062 3.938 21 O -0.383 6.383 22 C 0.065 3.935 23 C -0.164 4.164 24 C -0.238 4.238 25 H 0.262 0.738 26 H 0.027 0.973 27 H 0.027 0.973 28 H 0.051 0.949 29 H 0.051 0.949 30 H 0.127 0.873 31 H 0.118 0.882 32 H 0.115 0.885 33 H 0.399 0.601 34 H 0.080 0.920 35 H 0.074 0.926 36 H 0.080 0.920 37 H 0.052 0.948 38 H 0.096 0.904 39 H 0.053 0.947 40 H 0.097 0.903 41 H 0.081 0.919 42 H 0.077 0.923 43 H 0.124 0.876 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 7.135 -26.352 0.179 27.301 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.528 5.528 2 C -0.143 4.143 3 Si 0.726 3.274 4 H -0.196 1.196 5 H -0.208 1.208 6 H -0.209 1.209 7 C -0.563 4.563 8 H 0.077 0.923 9 C -0.013 4.013 10 C -0.008 4.008 11 O -0.229 6.229 12 C 0.140 3.860 13 C -0.284 4.284 14 C -0.056 4.056 15 C -0.269 4.269 16 C 0.145 3.855 17 N -0.373 5.373 18 C 0.048 3.952 19 C -0.212 4.212 20 C -0.015 4.015 21 O -0.302 6.302 22 C -0.013 4.013 23 C -0.202 4.202 24 C -0.261 4.261 25 H 0.072 0.928 26 H 0.046 0.954 27 H 0.046 0.954 28 H 0.069 0.931 29 H 0.069 0.931 30 H 0.144 0.856 31 H 0.136 0.864 32 H 0.133 0.867 33 H 0.233 0.767 34 H 0.098 0.902 35 H 0.093 0.907 36 H 0.099 0.901 37 H 0.070 0.930 38 H 0.114 0.886 39 H 0.071 0.929 40 H 0.115 0.885 41 H 0.099 0.901 42 H 0.095 0.905 43 H 0.142 0.858 Dipole moment (debyes) X Y Z Total from point charges 6.842 -26.482 0.090 27.352 hybrid contribution 0.314 1.363 0.120 1.404 sum 7.156 -25.119 0.210 26.120 Atomic orbital electron populations 1.69991 1.06102 1.26826 1.49892 1.25001 0.94912 0.99406 0.94967 0.86428 0.79994 0.83258 0.77697 1.19629 1.20849 1.20856 1.21015 0.93098 0.90202 1.51964 0.92293 1.19134 0.94217 0.89101 0.98832 1.23317 0.96989 0.80703 0.99758 1.86148 1.36777 1.13315 1.86654 1.18827 0.89868 0.86829 0.90457 1.21158 0.93004 0.99636 1.14606 1.20620 0.98988 0.91463 0.94490 1.20397 0.92246 0.97800 1.16430 1.17349 0.91504 0.84529 0.92122 1.44617 1.07945 1.01815 1.82948 1.20847 0.94869 0.83945 0.95495 1.22753 1.02172 0.98098 0.98224 1.22594 0.92756 0.87279 0.98861 1.87949 1.71358 1.44888 1.26008 1.22538 0.98365 0.96850 0.83499 1.22492 1.00170 0.95140 1.02439 1.19671 0.99651 0.88899 1.17892 0.92786 0.95435 0.95425 0.93079 0.93084 0.85558 0.86367 0.86743 0.76674 0.90159 0.90687 0.90101 0.93005 0.88590 0.92870 0.88453 0.90080 0.90452 0.85778 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.89 -26.66 13.29 55.43 0.74 -25.92 16 2 C 0.06 1.69 5.46 -17.82 -0.10 1.59 16 3 Si 0.90 21.39 29.54 -169.99 -5.02 16.37 16 4 H -0.27 -6.29 7.11 56.52 0.40 -5.89 16 5 H -0.28 -6.65 7.11 56.52 0.40 -6.24 16 6 H -0.28 -6.65 7.11 56.52 0.40 -6.25 16 7 C -0.52 -14.76 9.11 -34.44 -0.31 -15.07 16 8 H 0.06 1.58 7.74 -52.49 -0.41 1.18 16 9 C 0.02 0.65 5.34 -27.89 -0.15 0.50 16 10 C 0.07 1.46 4.68 37.16 0.17 1.63 16 11 O -0.32 -6.71 10.13 -19.42 -0.20 -6.91 16 12 C 0.19 3.41 6.68 -39.25 -0.26 3.14 16 13 C -0.26 -4.29 9.04 -39.39 -0.36 -4.64 16 14 C -0.04 -0.50 10.03 -39.64 -0.40 -0.89 16 15 C -0.25 -3.10 8.89 -39.36 -0.35 -3.45 16 16 C 0.25 3.24 6.64 -83.81 -0.56 2.69 16 17 N -0.74 -7.42 5.26 -52.00 -0.27 -7.70 16 18 C 0.15 1.23 2.23 -67.74 -0.15 1.08 16 19 C -0.17 -1.35 5.68 -26.59 -0.15 -1.50 16 20 C 0.06 0.43 6.84 37.21 0.25 0.68 16 21 O -0.38 -3.21 10.77 -35.23 -0.38 -3.59 16 22 C 0.06 0.40 6.84 37.21 0.25 0.66 16 23 C -0.16 -1.06 5.61 -26.59 -0.15 -1.21 16 24 C -0.24 -3.73 9.83 -39.24 -0.39 -4.12 16 25 H 0.26 7.35 8.31 -40.82 -0.34 7.01 16 26 H 0.03 0.77 8.14 -51.93 -0.42 0.35 16 27 H 0.03 0.78 8.14 -51.93 -0.42 0.35 16 28 H 0.05 1.07 7.67 -51.93 -0.40 0.67 16 29 H 0.05 1.07 7.65 -51.93 -0.40 0.67 16 30 H 0.13 2.04 6.29 -52.49 -0.33 1.71 16 31 H 0.12 1.29 8.06 -52.48 -0.42 0.86 16 32 H 0.11 1.18 6.08 -52.49 -0.32 0.86 16 33 H 0.40 3.57 8.62 -40.82 -0.35 3.22 16 34 H 0.08 0.66 6.48 -51.93 -0.34 0.32 16 35 H 0.07 0.64 8.14 -51.93 -0.42 0.22 16 36 H 0.08 0.68 7.72 -51.93 -0.40 0.28 16 37 H 0.05 0.31 8.14 -51.93 -0.42 -0.11 16 38 H 0.10 0.57 8.14 -51.93 -0.42 0.15 16 39 H 0.05 0.28 8.14 -51.93 -0.42 -0.14 16 40 H 0.10 0.47 8.14 -51.93 -0.42 0.05 16 41 H 0.08 0.48 8.14 -51.93 -0.42 0.06 16 42 H 0.08 0.52 8.14 -51.93 -0.42 0.09 16 43 H 0.12 1.85 8.06 -52.49 -0.42 1.43 16 LS Contribution 349.16 15.07 5.26 5.26 Total: -1.00 -31.30 349.16 -9.23 -40.54 By element: Atomic # 1 Polarization: 7.59 SS G_CDS: -6.73 Total: 0.87 kcal Atomic # 6 Polarization: -16.28 SS G_CDS: -2.64 Total: -18.92 kcal Atomic # 7 Polarization: -34.08 SS G_CDS: 0.46 Total: -33.62 kcal Atomic # 8 Polarization: -9.92 SS G_CDS: -0.58 Total: -10.50 kcal Atomic # 14 Polarization: 21.39 SS G_CDS: -5.02 Total: 16.37 kcal Total LS contribution 5.26 Total: 5.26 kcal Total: -31.30 -9.23 -40.54 kcal The number of atoms in the molecule is 43 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000037777460.mol2 43 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -32.650 kcal (2) G-P(sol) polarization free energy of solvation -31.304 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -63.955 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.234 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -40.538 kcal (6) G-S(sol) free energy of system = (1) + (5) -73.189 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.52 seconds