Wall clock time and date at job start Tue Mar 31 2020 08:19:53 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31519 * 1 3 3 Si 1.86800 * 120.00005 * 2 1 4 4 H 1.48499 * 109.46616 * 179.97438 * 3 2 1 5 5 H 1.48501 * 109.47104 * 299.99522 * 3 2 1 6 6 H 1.48489 * 109.47200 * 59.99802 * 3 2 1 7 7 C 1.37876 * 119.99563 * 179.97438 * 2 1 3 8 8 H 1.08001 * 119.99683 * 179.97438 * 7 2 1 9 9 C 1.50697 * 120.00428 * 0.02562 * 7 2 1 10 10 C 1.52997 * 109.47466 * 179.97438 * 9 7 2 11 11 O 1.42898 * 109.47319 * 180.02562 * 10 9 7 12 12 C 1.35897 * 117.00481 * 180.02562 * 11 10 9 13 13 C 1.38821 * 120.01275 * 359.72205 * 12 11 10 14 14 C 1.38173 * 120.08789 * 179.72138 * 13 12 11 15 15 C 1.38157 * 120.13180 * 0.55631 * 14 13 12 16 16 C 1.38929 * 120.03217 * 359.71781 * 15 14 13 17 17 N 1.39664 * 120.04617 * 180.02562 * 16 15 14 18 18 C 1.46504 * 119.99630 * 359.97438 * 17 16 15 19 19 C 1.53176 * 109.54399 * 274.81588 * 18 17 16 20 20 C 1.53101 * 109.15969 * 183.24169 * 19 18 17 21 21 O 1.42908 * 109.48377 * 57.47940 * 20 19 18 22 22 C 1.42903 * 114.09633 * 298.88614 * 21 20 19 23 23 C 1.53097 * 109.41297 * 61.16382 * 22 21 20 24 24 C 1.38564 * 120.02346 * 180.02562 * 12 11 10 25 25 H 0.97002 * 119.99731 * 0.02562 * 1 2 3 26 26 H 1.09002 * 109.47120 * 59.99671 * 9 7 2 27 27 H 1.08998 * 109.46862 * 300.00473 * 9 7 2 28 28 H 1.09002 * 109.47153 * 59.99773 * 10 9 7 29 29 H 1.09001 * 109.46832 * 299.99964 * 10 9 7 30 30 H 1.08000 * 119.95252 * 0.02562 * 13 12 11 31 31 H 1.08007 * 119.93164 * 180.27734 * 14 13 12 32 32 H 1.07999 * 119.98069 * 179.74516 * 15 14 13 33 33 H 0.97000 * 120.00446 * 179.97438 * 17 16 15 34 34 H 1.08999 * 109.54700 * 35.00037 * 18 17 16 35 35 H 1.09001 * 109.52809 * 303.06226 * 19 18 17 36 36 H 1.09003 * 109.51761 * 63.25312 * 19 18 17 37 37 H 1.09004 * 109.40853 * 297.49870 * 20 19 18 38 38 H 1.09000 * 109.49768 * 177.51323 * 20 19 18 39 39 H 1.08995 * 109.48502 * 301.17642 * 22 21 20 40 40 H 1.09000 * 109.48790 * 181.14891 * 22 21 20 41 41 H 1.09000 * 109.51780 * 182.48580 * 23 22 21 42 42 H 1.08991 * 109.52418 * 62.29037 * 23 22 21 43 43 H 1.07998 * 120.06257 * 359.97421 * 24 12 11 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3152 0.0000 0.0000 3 14 2.2492 1.6177 0.0000 4 1 3.7092 1.3463 0.0006 5 1 1.8905 2.3964 -1.2126 6 1 1.8904 2.3964 1.2124 7 6 2.0045 -1.1941 0.0005 8 1 3.0845 -1.1941 0.0001 9 6 1.2510 -2.4992 0.0005 10 6 2.2451 -3.6621 0.0005 11 8 1.5306 -4.8996 -0.0001 12 6 2.2706 -6.0395 0.0004 13 6 3.6570 -5.9673 -0.0044 14 6 4.4109 -7.1252 0.0019 15 6 3.7880 -8.3583 0.0013 16 6 2.4010 -8.4367 0.0004 17 7 1.7710 -9.6832 0.0004 18 6 2.5730 -10.9092 0.0009 19 6 2.9554 -11.2719 -1.4374 20 6 3.7234 -12.5963 -1.4344 21 8 2.9201 -13.6119 -0.8298 22 6 2.5731 -13.3482 0.5312 23 6 1.7568 -12.0552 0.6068 24 6 1.6419 -7.2743 -0.0007 25 1 -0.4850 0.8401 -0.0004 26 1 0.6246 -2.5571 -0.8897 27 1 0.6240 -2.5566 0.8902 28 1 2.8718 -3.6044 0.8905 29 1 2.8718 -3.6044 -0.8895 30 1 4.1468 -5.0047 -0.0081 31 1 5.4894 -7.0660 0.0026 32 1 4.3798 -9.2618 0.0021 33 1 0.8025 -9.7372 0.0002 34 1 3.4766 -10.7537 0.5903 35 1 2.0525 -11.3773 -2.0389 36 1 3.5837 -10.4859 -1.8564 37 1 4.6471 -12.4781 -0.8677 38 1 3.9599 -12.8821 -2.4593 39 1 3.4816 -13.2398 1.1235 40 1 1.9807 -14.1754 0.9222 41 1 1.5289 -11.8289 1.6484 42 1 0.8291 -12.1768 0.0480 43 1 0.5635 -7.3323 -0.0015 RHF calculation, no. of doubly occupied orbitals= 55 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000037777460.mol2 43 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 08:19:53 Heat of formation + Delta-G solvation = -92.482440 kcal Electronic energy + Delta-G solvation = -22283.848198 eV Core-core repulsion = 18906.681898 eV Total energy + Delta-G solvation = -3377.166300 eV No. of doubly occupied orbitals = 55 Molecular weight (most abundant/longest-lived isotopes) = 291.162 amu Computer time = 0.53 seconds Orbital eigenvalues (eV) -41.17738 -40.38682 -38.83631 -36.45929 -35.42977 -33.13670 -32.54877 -32.07547 -30.66622 -29.32463 -27.02045 -25.31592 -24.61969 -23.80102 -23.20437 -21.81024 -21.17123 -19.36910 -18.33829 -17.76174 -17.08377 -16.94599 -16.91314 -16.69731 -16.56241 -16.32029 -15.77316 -15.67280 -15.00820 -14.49253 -14.35334 -14.34505 -14.29186 -13.99321 -13.51965 -13.20932 -13.19671 -12.84653 -12.71826 -12.51997 -12.29992 -12.23001 -12.03732 -11.90459 -11.62030 -11.54360 -11.37805 -11.32096 -10.82946 -10.63109 -10.60465 -9.23872 -8.37197 -8.27088 -6.40698 0.55898 0.67850 1.40856 1.42030 1.55643 2.13088 2.38358 2.70166 2.94457 2.98970 3.07292 3.68077 3.83546 3.97335 4.01303 4.06694 4.23698 4.28440 4.28573 4.29885 4.35095 4.40178 4.54152 4.58646 4.68300 4.71503 4.74222 4.80329 4.84994 4.95990 5.07633 5.10844 5.23081 5.30106 5.33173 5.46574 5.51394 5.63717 5.66171 5.76130 6.06871 6.26186 6.39479 6.60763 6.74300 6.77176 7.29394 8.86390 Molecular weight = 291.16amu Principal moments of inertia in cm(-1) A = 0.049936 B = 0.002287 C = 0.002231 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 560.583245 B =12240.602071 C =12544.958643 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.932 5.932 2 C 0.000 4.000 3 Si 0.978 3.022 4 H -0.257 1.257 5 H -0.276 1.276 6 H -0.276 1.276 7 C -0.544 4.544 8 H 0.071 0.929 9 C 0.027 3.973 10 C 0.087 3.913 11 O -0.343 6.343 12 C 0.152 3.848 13 C -0.281 4.281 14 C -0.031 4.031 15 C -0.237 4.237 16 C 0.255 3.745 17 N -0.735 5.735 18 C 0.151 3.849 19 C -0.168 4.168 20 C 0.062 3.938 21 O -0.403 6.403 22 C 0.062 3.938 23 C -0.158 4.158 24 C -0.254 4.254 25 H 0.267 0.733 26 H -0.002 1.002 27 H -0.002 1.002 28 H 0.060 0.940 29 H 0.059 0.941 30 H 0.122 0.878 31 H 0.150 0.850 32 H 0.145 0.855 33 H 0.403 0.597 34 H 0.087 0.913 35 H 0.063 0.937 36 H 0.076 0.924 37 H 0.066 0.934 38 H 0.103 0.897 39 H 0.065 0.935 40 H 0.110 0.890 41 H 0.088 0.912 42 H 0.073 0.927 43 H 0.121 0.879 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 9.568 -27.888 0.451 29.487 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.571 5.571 2 C -0.199 4.199 3 Si 0.801 3.199 4 H -0.181 1.181 5 H -0.202 1.202 6 H -0.202 1.202 7 C -0.582 4.582 8 H 0.089 0.911 9 C -0.010 4.010 10 C 0.012 3.988 11 O -0.257 6.257 12 C 0.106 3.894 13 C -0.302 4.302 14 C -0.050 4.050 15 C -0.260 4.260 16 C 0.150 3.850 17 N -0.364 5.364 18 C 0.046 3.954 19 C -0.208 4.208 20 C -0.015 4.015 21 O -0.322 6.322 22 C -0.015 4.015 23 C -0.196 4.196 24 C -0.277 4.277 25 H 0.076 0.924 26 H 0.016 0.984 27 H 0.016 0.984 28 H 0.078 0.922 29 H 0.077 0.923 30 H 0.140 0.860 31 H 0.168 0.832 32 H 0.163 0.837 33 H 0.238 0.762 34 H 0.105 0.895 35 H 0.082 0.918 36 H 0.095 0.905 37 H 0.084 0.916 38 H 0.121 0.879 39 H 0.083 0.917 40 H 0.128 0.872 41 H 0.107 0.893 42 H 0.092 0.908 43 H 0.139 0.861 Dipole moment (debyes) X Y Z Total from point charges 9.275 -28.079 0.362 29.574 hybrid contribution -0.479 1.612 0.033 1.682 sum 8.796 -26.467 0.395 27.893 Atomic orbital electron populations 1.70135 1.08070 1.28165 1.50733 1.26071 0.95858 1.03767 0.94172 0.85210 0.79044 0.77756 0.77886 1.18086 1.20204 1.20198 1.21424 0.93835 0.90969 1.51966 0.91098 1.18979 0.94574 0.91483 0.95936 1.22840 0.95304 0.80120 1.00503 1.86055 1.37751 1.13920 1.87989 1.19160 0.90881 0.86163 0.93229 1.21234 0.92324 1.00708 1.15930 1.20974 1.00472 0.90652 0.92864 1.20763 0.92073 0.98696 1.14418 1.17418 0.91900 0.84786 0.90882 1.44768 1.08522 1.01496 1.81584 1.21045 0.95094 0.83343 0.95949 1.22689 1.01752 0.98646 0.97673 1.22663 0.92858 0.86343 0.99599 1.87931 1.71696 1.45500 1.27105 1.22685 0.99041 0.96951 0.82809 1.22448 0.99819 0.94703 1.02659 1.19784 0.99890 0.89192 1.18847 0.92443 0.98405 0.98367 0.92217 0.92255 0.86036 0.83187 0.83707 0.76163 0.89492 0.91829 0.90526 0.91605 0.87907 0.91663 0.87228 0.89298 0.90837 0.86120 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.93 -57.37 13.29 21.45 0.28 -57.09 16 2 C 0.00 -0.02 5.46 84.65 0.46 0.44 16 3 Si 0.98 43.95 29.54 68.60 2.03 45.97 16 4 H -0.26 -10.87 7.11 99.48 0.71 -10.16 16 5 H -0.28 -12.09 7.11 99.48 0.71 -11.38 16 6 H -0.28 -12.08 7.11 99.48 0.71 -11.38 16 7 C -0.54 -31.24 9.11 25.60 0.23 -31.00 16 8 H 0.07 3.81 7.74 -2.91 -0.02 3.78 16 9 C 0.03 1.54 5.34 29.85 0.16 1.70 16 10 C 0.09 3.95 4.68 71.98 0.34 4.29 16 11 O -0.34 -15.32 10.13 -92.39 -0.94 -16.25 16 12 C 0.15 5.64 6.68 22.49 0.15 5.79 16 13 C -0.28 -9.04 9.04 22.39 0.20 -8.84 16 14 C -0.03 -0.76 10.03 22.23 0.22 -0.54 16 15 C -0.24 -5.28 8.89 22.42 0.20 -5.08 16 16 C 0.25 6.29 6.64 38.20 0.25 6.54 16 17 N -0.74 -13.34 5.26 -318.43 -1.67 -15.01 16 18 C 0.15 2.01 2.23 45.11 0.10 2.11 16 19 C -0.17 -2.25 5.68 30.69 0.17 -2.08 16 20 C 0.06 0.70 6.84 72.02 0.49 1.19 16 21 O -0.40 -5.83 10.77 -148.98 -1.60 -7.43 16 22 C 0.06 0.60 6.84 72.01 0.49 1.09 16 23 C -0.16 -1.66 5.61 30.69 0.17 -1.49 16 24 C -0.25 -8.05 9.83 22.49 0.22 -7.83 16 25 H 0.27 15.25 8.31 -92.71 -0.77 14.48 16 26 H 0.00 -0.15 8.14 -2.39 -0.02 -0.17 16 27 H 0.00 -0.13 8.14 -2.39 -0.02 -0.15 16 28 H 0.06 2.57 7.67 -2.39 -0.02 2.55 16 29 H 0.06 2.56 7.65 -2.39 -0.02 2.54 16 30 H 0.12 3.92 6.29 -2.91 -0.02 3.90 16 31 H 0.15 2.70 8.06 -2.91 -0.02 2.67 16 32 H 0.15 2.35 6.08 -2.91 -0.02 2.33 16 33 H 0.40 6.72 8.62 -92.71 -0.80 5.92 16 34 H 0.09 1.10 6.48 -2.39 -0.02 1.08 16 35 H 0.06 1.00 8.14 -2.39 -0.02 0.98 16 36 H 0.08 1.10 7.72 -2.39 -0.02 1.08 16 37 H 0.07 0.56 8.14 -2.38 -0.02 0.54 16 38 H 0.10 0.99 8.14 -2.39 -0.02 0.98 16 39 H 0.07 0.48 8.14 -2.39 -0.02 0.47 16 40 H 0.11 0.78 8.14 -2.39 -0.02 0.76 16 41 H 0.09 0.82 8.14 -2.39 -0.02 0.80 16 42 H 0.07 0.84 8.14 -2.39 -0.02 0.82 16 43 H 0.12 3.76 8.06 -2.91 -0.02 3.74 16 Total: -1.00 -69.48 349.16 2.17 -67.31 By element: Atomic # 1 Polarization: 16.00 SS G_CDS: 0.20 Total: 16.20 kcal Atomic # 6 Polarization: -37.57 SS G_CDS: 3.87 Total: -33.69 kcal Atomic # 7 Polarization: -70.71 SS G_CDS: -1.39 Total: -72.10 kcal Atomic # 8 Polarization: -21.14 SS G_CDS: -2.54 Total: -23.68 kcal Atomic # 14 Polarization: 43.95 SS G_CDS: 2.03 Total: 45.97 kcal Total: -69.48 2.17 -67.31 kcal The number of atoms in the molecule is 43 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000037777460.mol2 43 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -25.176 kcal (2) G-P(sol) polarization free energy of solvation -69.478 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -94.654 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.171 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -67.306 kcal (6) G-S(sol) free energy of system = (1) + (5) -92.482 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.53 seconds