Wall clock time and date at job start Tue Mar 31 2020 08:03:13 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31557 * 1 3 3 Si 1.86804 * 120.00081 * 2 1 4 4 H 1.48498 * 109.47405 * 179.97438 * 3 2 1 5 5 H 1.48499 * 109.46759 * 299.99829 * 3 2 1 6 6 H 1.48501 * 109.47064 * 59.99650 * 3 2 1 7 7 C 1.38658 * 120.00233 * 179.97438 * 2 1 3 8 8 H 1.08004 * 120.00218 * 179.97438 * 7 2 1 9 9 O 1.34831 * 120.00074 * 0.02562 * 7 2 1 10 10 C 1.35746 * 117.00106 * 185.05736 * 9 7 2 11 11 C 1.38875 * 120.07087 * 354.45526 * 10 9 7 12 12 C 1.38098 * 119.93249 * 180.02562 * 11 10 9 13 13 C 1.38296 * 120.07035 * 0.27809 * 12 11 10 14 14 C 1.50694 * 119.93377 * 179.69926 * 13 12 11 15 15 N 1.46900 * 109.46875 * 90.00373 * 14 13 12 16 16 C 1.46902 * 111.00075 * 180.02562 * 15 14 13 17 17 C 1.53004 * 109.47239 * 180.02562 * 16 15 14 18 18 H 1.08997 * 109.51976 * 304.99476 * 17 16 15 19 19 C 1.53183 * 109.52071 * 184.87466 * 17 16 15 20 20 C 1.53187 * 109.02901 * 183.17365 * 19 17 16 21 21 C 1.53095 * 109.21124 * 56.88561 * 20 19 17 22 22 O 1.42898 * 109.41670 * 302.42302 * 21 20 19 23 23 C 1.42898 * 114.09795 * 61.15982 * 22 21 20 24 24 C 1.38308 * 120.13453 * 359.45154 * 13 12 11 25 25 C 1.38098 * 120.06835 * 0.54471 * 24 13 12 26 26 H 0.96992 * 119.99905 * 0.02562 * 1 2 3 27 27 H 1.08004 * 120.03162 * 0.02562 * 11 10 9 28 28 H 1.07998 * 119.96373 * 180.02562 * 12 11 10 29 29 H 1.09005 * 109.47384 * 210.00167 * 14 13 12 30 30 H 1.09002 * 109.47262 * 330.00468 * 14 13 12 31 31 H 1.00905 * 111.00211 * 56.05141 * 15 14 13 32 32 H 1.09001 * 109.46955 * 299.99925 * 16 15 14 33 33 H 1.09002 * 109.47403 * 59.99883 * 16 15 14 34 34 H 1.08998 * 109.54583 * 302.97938 * 19 17 16 35 35 H 1.09001 * 109.54304 * 63.25021 * 19 17 16 36 36 H 1.08999 * 109.47074 * 296.98296 * 20 19 17 37 37 H 1.09000 * 109.57613 * 176.85494 * 20 19 17 38 38 H 1.09005 * 109.47444 * 182.44147 * 21 20 19 39 39 H 1.08998 * 109.48998 * 62.41716 * 21 20 19 40 40 H 1.09000 * 109.48027 * 178.85591 * 23 22 21 41 41 H 1.09001 * 109.49249 * 58.83029 * 23 22 21 42 42 H 1.08004 * 119.96386 * 180.25534 * 24 13 12 43 43 H 1.08005 * 120.03204 * 179.74352 * 25 24 13 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3156 0.0000 0.0000 3 14 2.2496 1.6178 0.0000 4 1 3.7096 1.3465 0.0006 5 1 1.8909 2.3964 -1.2125 6 1 1.8908 2.3965 1.2125 7 6 2.0089 -1.2008 0.0005 8 1 3.0889 -1.2008 0.0001 9 8 1.3348 -2.3685 0.0005 10 6 2.0701 -3.5045 0.1077 11 6 3.4572 -3.4395 0.0951 12 6 4.2024 -4.5970 0.2037 13 6 3.5687 -5.8208 0.3193 14 6 4.3848 -7.0827 0.4308 15 7 4.6570 -7.3662 1.8463 16 6 5.4531 -8.5920 1.9941 17 6 5.7151 -8.8540 3.4786 18 1 6.1818 -7.9767 3.9264 19 6 6.6456 -10.0616 3.6287 20 6 6.8367 -10.3627 5.1185 21 6 5.4688 -10.5977 5.7645 22 8 4.6439 -9.4485 5.5616 23 6 4.3906 -9.1473 4.1879 24 6 2.1874 -5.8884 0.3378 25 6 1.4366 -4.7344 0.2295 26 1 -0.4849 0.8400 -0.0004 27 1 3.9527 -2.4845 0.0004 28 1 5.2812 -4.5470 0.1944 29 1 3.8309 -7.9136 -0.0061 30 1 5.3272 -6.9542 -0.1017 31 1 3.7994 -7.4258 2.3746 32 1 4.9069 -9.4335 1.5679 33 1 6.4028 -8.4736 1.4725 34 1 6.2020 -10.9271 3.1366 35 1 7.6106 -9.8370 3.1744 36 1 7.3265 -9.5165 5.6003 37 1 7.4525 -11.2545 5.2348 38 1 5.5963 -10.7695 6.8333 39 1 4.9968 -11.4688 5.3100 40 1 3.7412 -8.2744 4.1210 41 1 3.9044 -9.9992 3.7125 42 1 1.6954 -6.8453 0.4322 43 1 0.3580 -4.7883 0.2399 RHF calculation, no. of doubly occupied orbitals= 55 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000038044800.mol2 43 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 08:03:13 Heat of formation + Delta-G solvation = -62.910176 kcal Electronic energy + Delta-G solvation = -22287.089934 eV Core-core repulsion = 18911.205983 eV Total energy + Delta-G solvation = -3375.883951 eV No. of doubly occupied orbitals = 55 Molecular weight (most abundant/longest-lived isotopes) = 291.162 amu Computer time = 3.60 seconds Orbital eigenvalues (eV) -39.76144 -39.04043 -37.16594 -35.85634 -33.78653 -32.35726 -31.71443 -30.15600 -29.25736 -26.13084 -25.39578 -25.22880 -23.63735 -21.97548 -21.81870 -20.54441 -20.17641 -17.96845 -16.97758 -16.65634 -16.51668 -15.70595 -15.10226 -14.95322 -14.70406 -14.53538 -14.30344 -14.18070 -13.62995 -13.50755 -13.35090 -13.12129 -12.91773 -12.69520 -12.61227 -11.85932 -11.82980 -11.62599 -11.48693 -11.28695 -11.22672 -11.05814 -10.76876 -10.60801 -10.53209 -10.44262 -10.39601 -9.69000 -9.31181 -8.83001 -8.39232 -8.15338 -7.17275 -6.44180 -4.02777 2.23476 2.30141 3.13206 3.15182 3.20660 3.62656 3.97767 4.10954 4.47497 4.51057 4.58274 4.62814 4.79077 4.90089 5.08125 5.10979 5.14099 5.26544 5.27888 5.30750 5.37277 5.42990 5.44937 5.48556 5.62117 5.72012 5.74680 5.76891 5.84585 5.86409 5.91484 6.10846 6.22847 6.44497 6.71342 6.91994 6.94603 7.00944 7.12085 7.22166 7.39717 7.44316 7.47919 7.84463 8.01332 9.01788 9.71950 10.73994 Molecular weight = 291.16amu Principal moments of inertia in cm(-1) A = 0.026627 B = 0.002517 C = 0.002479 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1051.330896 B =11123.680960 C =11290.838251 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.863 5.863 2 C 0.038 3.962 3 Si 0.941 3.059 4 H -0.267 1.267 5 H -0.276 1.276 6 H -0.276 1.276 7 C -0.391 4.391 8 H 0.093 0.907 9 O -0.178 6.178 10 C 0.156 3.844 11 C -0.235 4.235 12 C -0.048 4.048 13 C -0.186 4.186 14 C 0.118 3.882 15 N -0.686 5.686 16 C 0.065 3.935 17 C -0.122 4.122 18 H 0.090 0.910 19 C -0.116 4.116 20 C -0.156 4.156 21 C 0.058 3.942 22 O -0.380 6.380 23 C 0.063 3.937 24 C -0.069 4.069 25 C -0.194 4.194 26 H 0.269 0.731 27 H 0.126 0.874 28 H 0.107 0.893 29 H 0.027 0.973 30 H 0.070 0.930 31 H 0.340 0.660 32 H 0.026 0.974 33 H 0.073 0.927 34 H 0.062 0.938 35 H 0.069 0.931 36 H 0.072 0.928 37 H 0.072 0.928 38 H 0.092 0.908 39 H 0.048 0.952 40 H 0.098 0.902 41 H 0.046 0.954 42 H 0.107 0.893 43 H 0.116 0.884 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 11.919 -19.730 6.163 23.861 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.498 5.498 2 C -0.166 4.166 3 Si 0.766 3.234 4 H -0.191 1.191 5 H -0.202 1.202 6 H -0.201 1.201 7 C -0.467 4.467 8 H 0.110 0.890 9 O -0.082 6.082 10 C 0.102 3.898 11 C -0.255 4.255 12 C -0.067 4.067 13 C -0.188 4.188 14 C -0.010 4.010 15 N -0.318 5.318 16 C -0.064 4.064 17 C -0.141 4.141 18 H 0.108 0.892 19 C -0.154 4.154 20 C -0.193 4.193 21 C -0.018 4.018 22 O -0.299 6.299 23 C -0.014 4.014 24 C -0.088 4.088 25 C -0.213 4.213 26 H 0.079 0.921 27 H 0.144 0.856 28 H 0.125 0.875 29 H 0.045 0.955 30 H 0.088 0.912 31 H 0.159 0.841 32 H 0.045 0.955 33 H 0.092 0.908 34 H 0.080 0.920 35 H 0.087 0.913 36 H 0.091 0.909 37 H 0.090 0.910 38 H 0.110 0.890 39 H 0.066 0.934 40 H 0.116 0.884 41 H 0.065 0.935 42 H 0.125 0.875 43 H 0.134 0.866 Dipole moment (debyes) X Y Z Total from point charges 11.957 -18.986 6.308 23.307 hybrid contribution -0.018 0.005 -0.462 0.462 sum 11.939 -18.980 5.846 23.173 Atomic orbital electron populations 1.70047 1.05965 1.27553 1.46239 1.25297 0.95845 0.98851 0.96574 0.85644 0.79166 0.80367 0.78236 1.19076 1.20169 1.20128 1.21385 0.91846 0.80802 1.52666 0.88986 1.83974 1.34413 1.11492 1.78284 1.19398 0.90330 0.88029 0.92047 1.21171 0.93780 0.98968 1.11535 1.20566 0.98312 0.91541 0.96288 1.19110 0.93088 0.93980 1.12584 1.20616 0.98182 0.94148 0.88011 1.60598 1.24621 1.35436 1.11142 1.21930 0.98607 0.90882 0.95015 1.21829 0.96973 0.99235 0.96053 0.89151 1.21603 0.99980 0.97737 0.96119 1.22185 0.98178 1.02588 0.96398 1.22576 0.90116 0.88188 1.00960 1.87969 1.69581 1.47226 1.25091 1.22687 0.96113 1.00622 0.81934 1.20473 0.92977 0.96581 0.98740 1.20165 0.99472 0.90358 1.11296 0.92081 0.85591 0.87508 0.95457 0.91170 0.84058 0.95550 0.90829 0.91971 0.91261 0.90904 0.90981 0.89030 0.93412 0.88424 0.93544 0.87537 0.86618 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.86 -25.46 13.67 55.48 0.76 -24.70 16 2 C 0.04 1.06 5.49 -17.51 -0.10 0.97 16 3 Si 0.94 20.68 29.55 -169.99 -5.02 15.66 16 4 H -0.27 -5.61 7.11 56.52 0.40 -5.21 16 5 H -0.28 -5.93 7.11 56.52 0.40 -5.53 16 6 H -0.28 -5.94 7.11 56.52 0.40 -5.54 16 7 C -0.39 -11.00 9.49 30.89 0.29 -10.71 16 8 H 0.09 2.41 5.20 -52.48 -0.27 2.14 16 9 O -0.18 -5.13 9.76 0.06 0.00 -5.13 16 10 C 0.16 3.80 6.65 -39.11 -0.26 3.54 16 11 C -0.24 -5.17 9.17 -39.40 -0.36 -5.53 16 12 C -0.05 -0.90 9.69 -39.61 -0.38 -1.28 16 13 C -0.19 -3.15 5.40 -104.58 -0.56 -3.71 16 14 C 0.12 1.57 5.81 -4.98 -0.03 1.54 16 15 N -0.69 -8.39 6.49 -115.05 -0.75 -9.14 16 16 C 0.07 0.63 5.15 -3.82 -0.02 0.61 16 17 C -0.12 -1.12 2.60 -90.48 -0.23 -1.35 16 18 H 0.09 0.98 8.14 -51.93 -0.42 0.56 16 19 C -0.12 -0.87 5.32 -26.54 -0.14 -1.01 16 20 C -0.16 -1.10 6.13 -26.59 -0.16 -1.26 16 21 C 0.06 0.46 6.84 37.21 0.25 0.72 16 22 O -0.38 -4.20 10.77 -35.23 -0.38 -4.58 16 23 C 0.06 0.62 5.84 37.20 0.22 0.84 16 24 C -0.07 -1.21 9.69 -39.61 -0.38 -1.60 16 25 C -0.19 -4.10 9.99 -39.40 -0.39 -4.49 16 26 H 0.27 7.26 8.31 -40.82 -0.34 6.92 16 27 H 0.13 2.79 5.64 -52.48 -0.30 2.49 16 28 H 0.11 1.75 8.06 -52.49 -0.42 1.33 16 29 H 0.03 0.34 8.09 -51.93 -0.42 -0.08 16 30 H 0.07 0.90 8.08 -51.93 -0.42 0.48 16 31 H 0.34 4.14 7.04 -39.29 -0.28 3.86 16 32 H 0.03 0.24 8.14 -51.93 -0.42 -0.18 16 33 H 0.07 0.70 8.14 -51.93 -0.42 0.28 16 34 H 0.06 0.43 8.14 -51.93 -0.42 0.01 16 35 H 0.07 0.48 8.14 -51.93 -0.42 0.06 16 36 H 0.07 0.56 8.14 -51.93 -0.42 0.14 16 37 H 0.07 0.39 8.14 -51.93 -0.42 -0.03 16 38 H 0.09 0.61 8.14 -51.93 -0.42 0.18 16 39 H 0.05 0.34 8.14 -51.93 -0.42 -0.09 16 40 H 0.10 1.00 6.80 -51.93 -0.35 0.65 16 41 H 0.05 0.41 8.14 -51.93 -0.42 -0.01 16 42 H 0.11 1.56 8.06 -52.48 -0.42 1.13 16 43 H 0.12 2.37 8.06 -52.48 -0.42 1.95 16 LS Contribution 349.57 15.07 5.27 5.27 Total: -1.00 -30.82 349.57 -9.06 -39.87 By element: Atomic # 1 Polarization: 12.16 SS G_CDS: -6.67 Total: 5.49 kcal Atomic # 6 Polarization: -20.47 SS G_CDS: -2.27 Total: -22.74 kcal Atomic # 7 Polarization: -33.85 SS G_CDS: 0.01 Total: -33.84 kcal Atomic # 8 Polarization: -9.33 SS G_CDS: -0.38 Total: -9.71 kcal Atomic # 14 Polarization: 20.68 SS G_CDS: -5.02 Total: 15.66 kcal Total LS contribution 5.27 Total: 5.27 kcal Total: -30.82 -9.06 -39.87 kcal The number of atoms in the molecule is 43 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000038044800.mol2 43 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -23.035 kcal (2) G-P(sol) polarization free energy of solvation -30.817 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -53.853 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.057 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -39.875 kcal (6) G-S(sol) free energy of system = (1) + (5) -62.910 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 3.60 seconds