Wall clock time and date at job start Tue Mar 31 2020 08:03:10 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31557 * 1 3 3 Si 1.86804 * 120.00081 * 2 1 4 4 H 1.48498 * 109.47405 * 179.97438 * 3 2 1 5 5 H 1.48499 * 109.46759 * 299.99829 * 3 2 1 6 6 H 1.48501 * 109.47064 * 59.99650 * 3 2 1 7 7 C 1.38658 * 120.00233 * 179.97438 * 2 1 3 8 8 H 1.08004 * 120.00218 * 179.97438 * 7 2 1 9 9 O 1.34831 * 120.00074 * 0.02562 * 7 2 1 10 10 C 1.35746 * 117.00106 * 185.05736 * 9 7 2 11 11 C 1.38875 * 120.07087 * 354.45526 * 10 9 7 12 12 C 1.38098 * 119.93249 * 180.02562 * 11 10 9 13 13 C 1.38296 * 120.07035 * 0.27809 * 12 11 10 14 14 C 1.50694 * 119.93377 * 179.69926 * 13 12 11 15 15 N 1.46900 * 109.46875 * 90.00373 * 14 13 12 16 16 C 1.46902 * 111.00075 * 180.02562 * 15 14 13 17 17 C 1.53004 * 109.47239 * 180.02562 * 16 15 14 18 18 H 1.08997 * 109.51976 * 304.99476 * 17 16 15 19 19 C 1.53183 * 109.52071 * 184.87466 * 17 16 15 20 20 C 1.53187 * 109.02901 * 183.17365 * 19 17 16 21 21 C 1.53095 * 109.21124 * 56.88561 * 20 19 17 22 22 O 1.42898 * 109.41670 * 302.42302 * 21 20 19 23 23 C 1.42898 * 114.09795 * 61.15982 * 22 21 20 24 24 C 1.38308 * 120.13453 * 359.45154 * 13 12 11 25 25 C 1.38098 * 120.06835 * 0.54471 * 24 13 12 26 26 H 0.96992 * 119.99905 * 0.02562 * 1 2 3 27 27 H 1.08004 * 120.03162 * 0.02562 * 11 10 9 28 28 H 1.07998 * 119.96373 * 180.02562 * 12 11 10 29 29 H 1.09005 * 109.47384 * 210.00167 * 14 13 12 30 30 H 1.09002 * 109.47262 * 330.00468 * 14 13 12 31 31 H 1.00905 * 111.00211 * 56.05141 * 15 14 13 32 32 H 1.09001 * 109.46955 * 299.99925 * 16 15 14 33 33 H 1.09002 * 109.47403 * 59.99883 * 16 15 14 34 34 H 1.08998 * 109.54583 * 302.97938 * 19 17 16 35 35 H 1.09001 * 109.54304 * 63.25021 * 19 17 16 36 36 H 1.08999 * 109.47074 * 296.98296 * 20 19 17 37 37 H 1.09000 * 109.57613 * 176.85494 * 20 19 17 38 38 H 1.09005 * 109.47444 * 182.44147 * 21 20 19 39 39 H 1.08998 * 109.48998 * 62.41716 * 21 20 19 40 40 H 1.09000 * 109.48027 * 178.85591 * 23 22 21 41 41 H 1.09001 * 109.49249 * 58.83029 * 23 22 21 42 42 H 1.08004 * 119.96386 * 180.25534 * 24 13 12 43 43 H 1.08005 * 120.03204 * 179.74352 * 25 24 13 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3156 0.0000 0.0000 3 14 2.2496 1.6178 0.0000 4 1 3.7096 1.3465 0.0006 5 1 1.8909 2.3964 -1.2125 6 1 1.8908 2.3965 1.2125 7 6 2.0089 -1.2008 0.0005 8 1 3.0889 -1.2008 0.0001 9 8 1.3348 -2.3685 0.0005 10 6 2.0701 -3.5045 0.1077 11 6 3.4572 -3.4395 0.0951 12 6 4.2024 -4.5970 0.2037 13 6 3.5687 -5.8208 0.3193 14 6 4.3848 -7.0827 0.4308 15 7 4.6570 -7.3662 1.8463 16 6 5.4531 -8.5920 1.9941 17 6 5.7151 -8.8540 3.4786 18 1 6.1818 -7.9767 3.9264 19 6 6.6456 -10.0616 3.6287 20 6 6.8367 -10.3627 5.1185 21 6 5.4688 -10.5977 5.7645 22 8 4.6439 -9.4485 5.5616 23 6 4.3906 -9.1473 4.1879 24 6 2.1874 -5.8884 0.3378 25 6 1.4366 -4.7344 0.2295 26 1 -0.4849 0.8400 -0.0004 27 1 3.9527 -2.4845 0.0004 28 1 5.2812 -4.5470 0.1944 29 1 3.8309 -7.9136 -0.0061 30 1 5.3272 -6.9542 -0.1017 31 1 3.7994 -7.4258 2.3746 32 1 4.9069 -9.4335 1.5679 33 1 6.4028 -8.4736 1.4725 34 1 6.2020 -10.9271 3.1366 35 1 7.6106 -9.8370 3.1744 36 1 7.3265 -9.5165 5.6003 37 1 7.4525 -11.2545 5.2348 38 1 5.5963 -10.7695 6.8333 39 1 4.9968 -11.4688 5.3100 40 1 3.7412 -8.2744 4.1210 41 1 3.9044 -9.9992 3.7125 42 1 1.6954 -6.8453 0.4322 43 1 0.3580 -4.7883 0.2399 RHF calculation, no. of doubly occupied orbitals= 55 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000038044800.mol2 43 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 08:03:10 Heat of formation + Delta-G solvation = -83.093832 kcal Electronic energy + Delta-G solvation = -22287.965163 eV Core-core repulsion = 18911.205983 eV Total energy + Delta-G solvation = -3376.759180 eV No. of doubly occupied orbitals = 55 Molecular weight (most abundant/longest-lived isotopes) = 291.162 amu Computer time = 0.57 seconds Orbital eigenvalues (eV) -40.80689 -40.41225 -38.66992 -36.98744 -34.67446 -34.20609 -32.64805 -31.77541 -30.56010 -27.64686 -26.67700 -26.03941 -24.76357 -23.60691 -22.54870 -21.99146 -20.94650 -19.82901 -18.82556 -17.53616 -17.22119 -16.64325 -16.43947 -16.14215 -15.92858 -15.81725 -15.54396 -15.44716 -15.10066 -14.86389 -14.55456 -14.26266 -14.10653 -13.82507 -13.58566 -13.53122 -12.99522 -12.92200 -12.58896 -12.38142 -12.35522 -12.14439 -12.09780 -12.06826 -11.90149 -11.41620 -11.19062 -11.16176 -10.79866 -10.37345 -9.76402 -9.32624 -8.89255 -8.47319 -6.15233 0.61634 0.68841 1.34949 1.43223 1.53379 2.17783 2.78745 2.96782 3.10405 3.44033 3.53197 3.82281 3.87842 3.98275 4.04978 4.07242 4.10930 4.21387 4.27351 4.40984 4.50889 4.53974 4.61293 4.64566 4.72864 4.73651 4.80617 4.83032 4.86453 5.01481 5.09633 5.10676 5.13471 5.17086 5.25224 5.31746 5.44111 5.57867 5.73122 5.83124 6.03605 6.11910 6.26222 6.28639 6.47093 6.97741 7.78891 8.76275 Molecular weight = 291.16amu Principal moments of inertia in cm(-1) A = 0.026627 B = 0.002517 C = 0.002479 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1051.330896 B =11123.680960 C =11290.838251 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.921 5.921 2 C -0.024 4.024 3 Si 1.019 2.981 4 H -0.252 1.252 5 H -0.267 1.267 6 H -0.268 1.268 7 C -0.412 4.412 8 H 0.100 0.900 9 O -0.233 6.233 10 C 0.113 3.887 11 C -0.245 4.245 12 C -0.050 4.050 13 C -0.159 4.159 14 C 0.123 3.877 15 N -0.699 5.699 16 C 0.071 3.929 17 C -0.116 4.116 18 H 0.068 0.932 19 C -0.114 4.114 20 C -0.153 4.153 21 C 0.051 3.949 22 O -0.408 6.408 23 C 0.062 3.938 24 C -0.060 4.060 25 C -0.205 4.205 26 H 0.273 0.727 27 H 0.116 0.884 28 H 0.135 0.865 29 H 0.049 0.951 30 H 0.083 0.917 31 H 0.341 0.659 32 H 0.041 0.959 33 H 0.079 0.921 34 H 0.073 0.927 35 H 0.076 0.924 36 H 0.061 0.939 37 H 0.092 0.908 38 H 0.100 0.900 39 H 0.059 0.941 40 H 0.086 0.914 41 H 0.058 0.942 42 H 0.147 0.853 43 H 0.112 0.888 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 14.504 -22.474 6.239 27.466 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.560 5.560 2 C -0.221 4.221 3 Si 0.838 3.162 4 H -0.175 1.175 5 H -0.192 1.192 6 H -0.193 1.193 7 C -0.488 4.488 8 H 0.118 0.882 9 O -0.140 6.140 10 C 0.062 3.938 11 C -0.264 4.264 12 C -0.069 4.069 13 C -0.160 4.160 14 C -0.006 4.006 15 N -0.331 5.331 16 C -0.058 4.058 17 C -0.135 4.135 18 H 0.087 0.913 19 C -0.152 4.152 20 C -0.191 4.191 21 C -0.025 4.025 22 O -0.327 6.327 23 C -0.015 4.015 24 C -0.078 4.078 25 C -0.224 4.224 26 H 0.082 0.918 27 H 0.134 0.866 28 H 0.153 0.847 29 H 0.067 0.933 30 H 0.101 0.899 31 H 0.159 0.841 32 H 0.060 0.940 33 H 0.097 0.903 34 H 0.092 0.908 35 H 0.094 0.906 36 H 0.080 0.920 37 H 0.110 0.890 38 H 0.118 0.882 39 H 0.077 0.923 40 H 0.104 0.896 41 H 0.076 0.924 42 H 0.165 0.835 43 H 0.131 0.869 Dipole moment (debyes) X Y Z Total from point charges 14.582 -21.795 6.388 26.990 hybrid contribution -0.697 0.461 -0.420 0.935 sum 13.885 -21.334 5.967 26.145 Atomic orbital electron populations 1.70187 1.08005 1.28718 1.49057 1.26594 0.96872 1.02739 0.95920 0.84526 0.78209 0.74845 0.78595 1.17547 1.19221 1.19349 1.21851 0.92473 0.81482 1.53037 0.88225 1.83937 1.35978 1.12613 1.81476 1.19961 0.91609 0.88010 0.94172 1.21256 0.93121 1.00038 1.11990 1.20905 0.99625 0.90972 0.95400 1.19654 0.93262 0.95157 1.07917 1.20612 0.98358 0.92480 0.89108 1.60527 1.24938 1.37389 1.10260 1.21937 0.98505 0.90118 0.95263 1.21737 0.96920 0.99250 0.95572 0.91307 1.21603 0.99901 0.97197 0.96481 1.22173 0.97844 1.03081 0.96004 1.22785 0.90268 0.87574 1.01893 1.87929 1.70396 1.48599 1.25819 1.22701 0.96364 1.00671 0.81767 1.20899 0.93367 0.96852 0.96697 1.20446 0.99913 0.90619 1.11460 0.91844 0.86645 0.84742 0.93278 0.89907 0.84052 0.94044 0.90252 0.90821 0.90558 0.92001 0.88952 0.88166 0.92283 0.89569 0.92355 0.83497 0.86947 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.92 -57.34 13.67 21.61 0.30 -57.04 16 2 C -0.02 -1.39 5.49 84.83 0.47 -0.92 16 3 Si 1.02 43.63 29.55 68.60 2.03 45.66 16 4 H -0.25 -10.01 7.11 99.48 0.71 -9.30 16 5 H -0.27 -10.92 7.11 99.48 0.71 -10.21 16 6 H -0.27 -11.04 7.11 99.48 0.71 -10.33 16 7 C -0.41 -24.49 9.49 67.92 0.64 -23.84 16 8 H 0.10 5.47 5.20 -2.91 -0.02 5.46 16 9 O -0.23 -14.32 9.76 -22.71 -0.22 -14.54 16 10 C 0.11 5.72 6.65 22.58 0.15 5.87 16 11 C -0.24 -10.93 9.17 22.39 0.21 -10.72 16 12 C -0.05 -1.78 9.69 22.25 0.22 -1.57 16 13 C -0.16 -4.86 5.40 -19.84 -0.11 -4.97 16 14 C 0.12 2.68 5.81 85.56 0.50 3.18 16 15 N -0.70 -14.55 6.49 -517.91 -3.36 -17.91 16 16 C 0.07 1.10 5.15 86.30 0.44 1.54 16 17 C -0.12 -1.84 2.60 -10.70 -0.03 -1.86 16 18 H 0.07 1.40 8.14 -2.39 -0.02 1.38 16 19 C -0.11 -1.34 5.32 30.72 0.16 -1.18 16 20 C -0.15 -1.78 6.13 30.69 0.19 -1.59 16 21 C 0.05 0.70 6.84 72.01 0.49 1.19 16 22 O -0.41 -8.48 10.77 -148.98 -1.60 -10.08 16 23 C 0.06 1.08 5.84 72.01 0.42 1.50 16 24 C -0.06 -1.96 9.69 22.25 0.22 -1.74 16 25 C -0.21 -8.78 9.99 22.39 0.22 -8.55 16 26 H 0.27 15.47 8.31 -92.71 -0.77 14.70 16 27 H 0.12 5.29 5.64 -2.91 -0.02 5.27 16 28 H 0.13 4.00 8.06 -2.91 -0.02 3.97 16 29 H 0.05 0.92 8.09 -2.38 -0.02 0.90 16 30 H 0.08 1.69 8.08 -2.39 -0.02 1.67 16 31 H 0.34 7.18 7.04 -89.69 -0.63 6.55 16 32 H 0.04 0.55 8.14 -2.39 -0.02 0.53 16 33 H 0.08 1.18 8.14 -2.39 -0.02 1.16 16 34 H 0.07 0.72 8.14 -2.39 -0.02 0.70 16 35 H 0.08 0.81 8.14 -2.39 -0.02 0.79 16 36 H 0.06 0.85 8.14 -2.39 -0.02 0.83 16 37 H 0.09 0.71 8.14 -2.39 -0.02 0.69 16 38 H 0.10 1.15 8.14 -2.38 -0.02 1.13 16 39 H 0.06 0.67 8.14 -2.39 -0.02 0.65 16 40 H 0.09 1.66 6.80 -2.39 -0.02 1.64 16 41 H 0.06 0.87 8.14 -2.39 -0.02 0.85 16 42 H 0.15 3.65 8.06 -2.91 -0.02 3.63 16 43 H 0.11 4.77 8.06 -2.91 -0.02 4.74 16 Total: -1.00 -71.86 349.57 1.70 -70.17 By element: Atomic # 1 Polarization: 27.04 SS G_CDS: 0.37 Total: 27.40 kcal Atomic # 6 Polarization: -47.84 SS G_CDS: 4.19 Total: -43.65 kcal Atomic # 7 Polarization: -71.89 SS G_CDS: -3.06 Total: -74.95 kcal Atomic # 8 Polarization: -22.79 SS G_CDS: -1.83 Total: -24.62 kcal Atomic # 14 Polarization: 43.63 SS G_CDS: 2.03 Total: 45.66 kcal Total: -71.86 1.70 -70.17 kcal The number of atoms in the molecule is 43 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000038044800.mol2 43 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -12.929 kcal (2) G-P(sol) polarization free energy of solvation -71.863 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -84.791 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 1.697 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -70.165 kcal (6) G-S(sol) free energy of system = (1) + (5) -83.094 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.57 seconds