Wall clock time and date at job start Tue Mar 31 2020 08:03:26 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31557 * 1 3 3 Si 1.86799 * 119.99988 * 2 1 4 4 H 1.48500 * 109.46932 * 269.99513 * 3 2 1 5 5 H 1.48498 * 109.47326 * 29.99768 * 3 2 1 6 6 H 1.48500 * 109.46999 * 149.99488 * 3 2 1 7 7 C 1.38657 * 119.99954 * 179.97438 * 2 1 3 8 8 H 1.07993 * 120.00100 * 0.02562 * 7 2 1 9 9 O 1.34830 * 120.00052 * 179.97438 * 7 2 1 10 10 C 1.35745 * 117.00000 * 185.05927 * 9 7 2 11 11 C 1.38874 * 120.07194 * 354.46775 * 10 9 7 12 12 C 1.38098 * 119.93279 * 179.97438 * 11 10 9 13 13 C 1.38296 * 120.07035 * 0.25429 * 12 11 10 14 14 C 1.50695 * 119.93408 * 179.72120 * 13 12 11 15 15 N 1.46906 * 109.47136 * 90.00277 * 14 13 12 16 16 C 1.46903 * 110.99993 * 180.02562 * 15 14 13 17 17 C 1.52998 * 109.46856 * 180.02562 * 16 15 14 18 18 H 1.09005 * 109.52274 * 54.99780 * 17 16 15 19 19 C 1.53175 * 109.52241 * 175.12618 * 17 16 15 20 20 C 1.53184 * 109.03373 * 176.82427 * 19 17 16 21 21 C 1.53097 * 109.21495 * 303.11146 * 20 19 17 22 22 O 1.42909 * 109.41068 * 57.57468 * 21 20 19 23 23 C 1.42905 * 114.09944 * 298.84067 * 22 21 20 24 24 C 1.38307 * 120.13424 * 359.49465 * 13 12 11 25 25 C 1.38090 * 120.07102 * 0.50636 * 24 13 12 26 26 H 0.97002 * 119.99941 * 0.02562 * 1 2 3 27 27 H 1.08003 * 120.03112 * 0.02562 * 11 10 9 28 28 H 1.07998 * 119.96373 * 179.97438 * 12 11 10 29 29 H 1.09006 * 109.47492 * 210.00476 * 14 13 12 30 30 H 1.09004 * 109.47311 * 330.00575 * 14 13 12 31 31 H 1.00904 * 110.99640 * 56.04571 * 15 14 13 32 32 H 1.09002 * 109.47211 * 300.00237 * 16 15 14 33 33 H 1.08997 * 109.47038 * 60.00074 * 16 15 14 34 34 H 1.09000 * 109.54219 * 296.75117 * 19 17 16 35 35 H 1.09000 * 109.54190 * 57.01986 * 19 17 16 36 36 H 1.09005 * 109.52673 * 183.17903 * 20 19 17 37 37 H 1.09000 * 109.52541 * 63.05010 * 20 19 17 38 38 H 1.09001 * 109.48160 * 297.59692 * 21 20 19 39 39 H 1.08993 * 109.49429 * 177.56354 * 21 20 19 40 40 H 1.08994 * 109.48295 * 301.18031 * 23 22 21 41 41 H 1.08993 * 109.48919 * 181.14530 * 23 22 21 42 42 H 1.08004 * 119.96341 * 180.25519 * 24 13 12 43 43 H 1.08004 * 120.03956 * 179.77442 * 25 24 13 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3156 0.0000 0.0000 3 14 2.2496 1.6177 0.0000 4 1 2.4971 2.0463 -1.4001 5 1 1.4470 2.6527 0.7000 6 1 3.5471 1.4402 0.7001 7 6 2.0088 -1.2008 0.0005 8 1 1.4689 -2.1361 0.0005 9 8 3.3572 -1.2008 0.0000 10 6 3.9734 -2.4057 -0.1061 11 6 3.2234 -3.5745 -0.0922 12 6 3.8532 -4.7987 -0.2008 13 6 5.2298 -4.8618 -0.3181 14 6 5.9144 -6.1995 -0.4302 15 7 6.0220 -6.5775 -1.8457 16 6 6.6854 -7.8798 -1.9938 17 6 6.7794 -8.2383 -3.4783 18 1 7.2789 -7.4328 -4.0166 19 6 7.5773 -9.5354 -3.6421 20 6 7.5970 -9.9262 -5.1231 21 6 6.1579 -10.0602 -5.6280 22 8 5.4642 -8.8285 -5.4180 23 6 5.3718 -8.4374 -4.0466 24 6 5.9790 -3.6994 -0.3375 25 6 5.3551 -2.4722 -0.2292 26 1 -0.4850 0.8401 -0.0004 27 1 2.1487 -3.5260 0.0027 28 1 3.2706 -5.7079 -0.1896 29 1 6.9115 -6.1351 0.0055 30 1 5.3326 -6.9513 0.1034 31 1 6.5017 -5.8647 -2.3748 32 1 7.6878 -7.8275 -1.5689 33 1 6.1086 -8.6429 -1.4712 34 1 8.5978 -9.3826 -3.2908 35 1 7.1058 -10.3292 -3.0627 36 1 8.1147 -10.8781 -5.2420 37 1 8.1138 -9.1564 -5.6962 38 1 5.6542 -10.8585 -5.0828 39 1 6.1662 -10.2958 -6.6921 40 1 4.8580 -9.2145 -3.4808 41 1 4.8141 -7.5040 -3.9715 42 1 7.0535 -3.7517 -0.4333 43 1 5.9410 -1.5649 -0.2407 RHF calculation, no. of doubly occupied orbitals= 55 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000038044801.mol2 43 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 08:03:26 Heat of formation + Delta-G solvation = -61.792071 kcal Electronic energy + Delta-G solvation = -22316.187261 eV Core-core repulsion = 18940.351795 eV Total energy + Delta-G solvation = -3375.835466 eV No. of doubly occupied orbitals = 55 Molecular weight (most abundant/longest-lived isotopes) = 291.162 amu Computer time = 0.57 seconds Orbital eigenvalues (eV) -39.68406 -39.19868 -37.29807 -35.91460 -33.77140 -32.42482 -31.78631 -30.25852 -29.44192 -26.25422 -25.20800 -25.12672 -23.56000 -22.10363 -21.88407 -20.60116 -20.12914 -17.88182 -17.26662 -16.65729 -16.25810 -15.69639 -15.18074 -14.98257 -14.91013 -14.59627 -14.26169 -14.02239 -13.77924 -13.59428 -13.41417 -12.92764 -12.84127 -12.59977 -12.49976 -12.30132 -12.14278 -11.67903 -11.47945 -11.32216 -11.18283 -11.03410 -10.74629 -10.68569 -10.54954 -10.50284 -10.14260 -9.64828 -9.38094 -8.86919 -8.42640 -8.24718 -7.32439 -6.41391 -4.07981 2.13502 2.18170 3.22110 3.25975 3.40238 3.73058 4.06644 4.23817 4.46708 4.53077 4.53511 4.64882 4.79899 4.85543 4.92691 5.11006 5.12858 5.22128 5.23178 5.30690 5.36583 5.44197 5.45992 5.53201 5.61171 5.65960 5.70356 5.73497 5.77011 5.83301 6.02830 6.06928 6.14247 6.34603 6.57072 6.79611 6.93418 7.04629 7.08339 7.22540 7.33184 7.40433 7.61790 7.80903 8.04127 8.93842 9.56175 10.66254 Molecular weight = 291.16amu Principal moments of inertia in cm(-1) A = 0.027289 B = 0.002605 C = 0.002502 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1025.792900 B =10747.289182 C =11186.277987 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.879 5.879 2 C 0.063 3.937 3 Si 0.906 3.094 4 H -0.273 1.273 5 H -0.282 1.282 6 H -0.260 1.260 7 C -0.389 4.389 8 H 0.107 0.893 9 O -0.218 6.218 10 C 0.162 3.838 11 C -0.222 4.222 12 C -0.050 4.050 13 C -0.177 4.177 14 C 0.117 3.883 15 N -0.685 5.685 16 C 0.064 3.936 17 C -0.120 4.120 18 H 0.078 0.922 19 C -0.117 4.117 20 C -0.155 4.155 21 C 0.058 3.942 22 O -0.384 6.384 23 C 0.072 3.928 24 C -0.071 4.071 25 C -0.194 4.194 26 H 0.279 0.721 27 H 0.133 0.867 28 H 0.110 0.890 29 H 0.028 0.972 30 H 0.071 0.929 31 H 0.343 0.657 32 H 0.029 0.971 33 H 0.071 0.929 34 H 0.065 0.935 35 H 0.064 0.936 36 H 0.071 0.929 37 H 0.070 0.930 38 H 0.048 0.952 39 H 0.090 0.910 40 H 0.047 0.953 41 H 0.109 0.891 42 H 0.108 0.892 43 H 0.115 0.885 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 15.163 -18.545 -6.048 24.706 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.517 5.517 2 C -0.140 4.140 3 Si 0.731 3.269 4 H -0.199 1.199 5 H -0.208 1.208 6 H -0.184 1.184 7 C -0.465 4.465 8 H 0.124 0.876 9 O -0.122 6.122 10 C 0.109 3.891 11 C -0.241 4.241 12 C -0.069 4.069 13 C -0.179 4.179 14 C -0.011 4.011 15 N -0.317 5.317 16 C -0.065 4.065 17 C -0.139 4.139 18 H 0.096 0.904 19 C -0.155 4.155 20 C -0.193 4.193 21 C -0.019 4.019 22 O -0.303 6.303 23 C -0.004 4.004 24 C -0.089 4.089 25 C -0.213 4.213 26 H 0.090 0.910 27 H 0.150 0.850 28 H 0.128 0.872 29 H 0.046 0.954 30 H 0.089 0.911 31 H 0.161 0.839 32 H 0.047 0.953 33 H 0.090 0.910 34 H 0.084 0.916 35 H 0.082 0.918 36 H 0.089 0.911 37 H 0.089 0.911 38 H 0.066 0.934 39 H 0.108 0.892 40 H 0.065 0.935 41 H 0.127 0.873 42 H 0.126 0.874 43 H 0.134 0.866 Dipole moment (debyes) X Y Z Total from point charges 14.320 -18.335 -6.185 24.072 hybrid contribution 1.200 0.736 0.453 1.479 sum 15.520 -17.599 -5.732 24.155 Atomic orbital electron populations 1.69648 1.05569 1.28492 1.48004 1.24472 0.95028 0.98830 0.95687 0.86179 0.80300 0.81439 0.78967 1.19866 1.20787 1.18402 1.20777 0.76876 0.96656 1.52183 0.87581 1.83567 1.22644 1.25807 1.80230 1.19139 0.91701 0.85515 0.92729 1.21289 1.01141 0.91887 1.09826 1.20623 0.93384 0.96625 0.96235 1.19176 0.93846 0.93349 1.11493 1.20628 0.97720 0.94544 0.88169 1.60556 1.56278 1.03911 1.10943 1.21936 0.96792 0.92690 0.95094 1.21800 0.97766 0.97994 0.96333 0.90385 1.21611 1.00450 0.97207 0.96254 1.22181 0.98119 1.02248 0.96749 1.22552 0.91296 0.86848 1.01174 1.87975 1.76247 1.39716 1.26362 1.22622 0.95290 1.01183 0.81315 1.20470 0.98074 0.91528 0.98871 1.20159 0.91993 0.97765 1.11370 0.91043 0.84972 0.87209 0.95387 0.91075 0.83919 0.95266 0.91040 0.91590 0.91759 0.91057 0.91089 0.93419 0.89202 0.93491 0.87344 0.87370 0.86650 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.88 -25.49 13.96 55.48 0.77 -24.72 16 2 C 0.06 1.78 5.49 -17.51 -0.10 1.68 16 3 Si 0.91 21.74 28.62 -169.99 -4.86 16.87 16 4 H -0.27 -6.45 7.11 56.52 0.40 -6.04 16 5 H -0.28 -6.52 7.11 56.52 0.40 -6.12 16 6 H -0.26 -6.25 7.11 56.52 0.40 -5.85 16 7 C -0.39 -11.01 9.95 30.89 0.31 -10.70 16 8 H 0.11 3.06 5.44 -52.49 -0.29 2.78 16 9 O -0.22 -5.76 8.59 0.06 0.00 -5.76 16 10 C 0.16 3.72 6.65 -39.11 -0.26 3.46 16 11 C -0.22 -4.79 9.17 -39.40 -0.36 -5.15 16 12 C -0.05 -0.90 9.69 -39.61 -0.38 -1.28 16 13 C -0.18 -2.84 5.40 -104.58 -0.56 -3.40 16 14 C 0.12 1.47 5.81 -4.98 -0.03 1.44 16 15 N -0.69 -7.83 6.00 -115.05 -0.69 -8.52 16 16 C 0.06 0.59 5.08 -3.82 -0.02 0.57 16 17 C -0.12 -1.06 2.53 -90.48 -0.23 -1.29 16 18 H 0.08 0.75 8.14 -51.93 -0.42 0.33 16 19 C -0.12 -0.85 5.32 -26.55 -0.14 -1.00 16 20 C -0.16 -1.09 6.13 -26.59 -0.16 -1.25 16 21 C 0.06 0.48 6.84 37.21 0.25 0.73 16 22 O -0.38 -4.41 10.77 -35.23 -0.38 -4.79 16 23 C 0.07 0.76 5.99 37.21 0.22 0.98 16 24 C -0.07 -1.16 9.69 -39.61 -0.38 -1.55 16 25 C -0.19 -3.80 9.99 -39.40 -0.39 -4.19 16 26 H 0.28 7.48 8.31 -40.82 -0.34 7.14 16 27 H 0.13 3.01 5.64 -52.48 -0.30 2.71 16 28 H 0.11 1.76 8.06 -52.49 -0.42 1.33 16 29 H 0.03 0.32 8.09 -51.93 -0.42 -0.10 16 30 H 0.07 0.86 8.08 -51.93 -0.42 0.44 16 31 H 0.34 3.93 8.72 -39.29 -0.34 3.59 16 32 H 0.03 0.25 8.14 -51.93 -0.42 -0.17 16 33 H 0.07 0.65 8.14 -51.93 -0.42 0.23 16 34 H 0.07 0.44 8.14 -51.93 -0.42 0.02 16 35 H 0.06 0.44 8.14 -51.93 -0.42 0.02 16 36 H 0.07 0.39 8.14 -51.93 -0.42 -0.03 16 37 H 0.07 0.53 8.14 -51.93 -0.42 0.11 16 38 H 0.05 0.35 8.14 -51.93 -0.42 -0.07 16 39 H 0.09 0.62 8.14 -51.93 -0.42 0.20 16 40 H 0.05 0.47 8.14 -51.93 -0.42 0.04 16 41 H 0.11 1.29 7.83 -51.93 -0.41 0.88 16 42 H 0.11 1.46 8.06 -52.48 -0.42 1.04 16 43 H 0.12 2.12 8.06 -52.48 -0.42 1.69 16 LS Contribution 350.69 15.07 5.28 5.28 Total: -1.00 -29.49 350.69 -8.92 -38.41 By element: Atomic # 1 Polarization: 10.98 SS G_CDS: -6.80 Total: 4.18 kcal Atomic # 6 Polarization: -18.72 SS G_CDS: -2.24 Total: -20.96 kcal Atomic # 7 Polarization: -33.32 SS G_CDS: 0.08 Total: -33.24 kcal Atomic # 8 Polarization: -10.16 SS G_CDS: -0.38 Total: -10.54 kcal Atomic # 14 Polarization: 21.74 SS G_CDS: -4.86 Total: 16.87 kcal Total LS contribution 5.28 Total: 5.28 kcal Total: -29.49 -8.92 -38.41 kcal The number of atoms in the molecule is 43 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000038044801.mol2 43 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -23.387 kcal (2) G-P(sol) polarization free energy of solvation -29.490 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -52.877 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.915 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -38.405 kcal (6) G-S(sol) free energy of system = (1) + (5) -61.792 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.57 seconds