Wall clock time and date at job start Tue Mar 31 2020 08:03:26 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31557 * 1 3 3 Si 1.86799 * 119.99988 * 2 1 4 4 H 1.48500 * 109.46932 * 269.99513 * 3 2 1 5 5 H 1.48498 * 109.47326 * 29.99768 * 3 2 1 6 6 H 1.48500 * 109.46999 * 149.99488 * 3 2 1 7 7 C 1.38657 * 119.99954 * 179.97438 * 2 1 3 8 8 H 1.07993 * 120.00100 * 0.02562 * 7 2 1 9 9 O 1.34830 * 120.00052 * 179.97438 * 7 2 1 10 10 C 1.35745 * 117.00000 * 185.05927 * 9 7 2 11 11 C 1.38874 * 120.07194 * 354.46775 * 10 9 7 12 12 C 1.38098 * 119.93279 * 179.97438 * 11 10 9 13 13 C 1.38296 * 120.07035 * 0.25429 * 12 11 10 14 14 C 1.50695 * 119.93408 * 179.72120 * 13 12 11 15 15 N 1.46906 * 109.47136 * 90.00277 * 14 13 12 16 16 C 1.46903 * 110.99993 * 180.02562 * 15 14 13 17 17 C 1.52998 * 109.46856 * 180.02562 * 16 15 14 18 18 H 1.09005 * 109.52274 * 54.99780 * 17 16 15 19 19 C 1.53175 * 109.52241 * 175.12618 * 17 16 15 20 20 C 1.53184 * 109.03373 * 176.82427 * 19 17 16 21 21 C 1.53097 * 109.21495 * 303.11146 * 20 19 17 22 22 O 1.42909 * 109.41068 * 57.57468 * 21 20 19 23 23 C 1.42905 * 114.09944 * 298.84067 * 22 21 20 24 24 C 1.38307 * 120.13424 * 359.49465 * 13 12 11 25 25 C 1.38090 * 120.07102 * 0.50636 * 24 13 12 26 26 H 0.97002 * 119.99941 * 0.02562 * 1 2 3 27 27 H 1.08003 * 120.03112 * 0.02562 * 11 10 9 28 28 H 1.07998 * 119.96373 * 179.97438 * 12 11 10 29 29 H 1.09006 * 109.47492 * 210.00476 * 14 13 12 30 30 H 1.09004 * 109.47311 * 330.00575 * 14 13 12 31 31 H 1.00904 * 110.99640 * 56.04571 * 15 14 13 32 32 H 1.09002 * 109.47211 * 300.00237 * 16 15 14 33 33 H 1.08997 * 109.47038 * 60.00074 * 16 15 14 34 34 H 1.09000 * 109.54219 * 296.75117 * 19 17 16 35 35 H 1.09000 * 109.54190 * 57.01986 * 19 17 16 36 36 H 1.09005 * 109.52673 * 183.17903 * 20 19 17 37 37 H 1.09000 * 109.52541 * 63.05010 * 20 19 17 38 38 H 1.09001 * 109.48160 * 297.59692 * 21 20 19 39 39 H 1.08993 * 109.49429 * 177.56354 * 21 20 19 40 40 H 1.08994 * 109.48295 * 301.18031 * 23 22 21 41 41 H 1.08993 * 109.48919 * 181.14530 * 23 22 21 42 42 H 1.08004 * 119.96341 * 180.25519 * 24 13 12 43 43 H 1.08004 * 120.03956 * 179.77442 * 25 24 13 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3156 0.0000 0.0000 3 14 2.2496 1.6177 0.0000 4 1 2.4971 2.0463 -1.4001 5 1 1.4470 2.6527 0.7000 6 1 3.5471 1.4402 0.7001 7 6 2.0088 -1.2008 0.0005 8 1 1.4689 -2.1361 0.0005 9 8 3.3572 -1.2008 0.0000 10 6 3.9734 -2.4057 -0.1061 11 6 3.2234 -3.5745 -0.0922 12 6 3.8532 -4.7987 -0.2008 13 6 5.2298 -4.8618 -0.3181 14 6 5.9144 -6.1995 -0.4302 15 7 6.0220 -6.5775 -1.8457 16 6 6.6854 -7.8798 -1.9938 17 6 6.7794 -8.2383 -3.4783 18 1 7.2789 -7.4328 -4.0166 19 6 7.5773 -9.5354 -3.6421 20 6 7.5970 -9.9262 -5.1231 21 6 6.1579 -10.0602 -5.6280 22 8 5.4642 -8.8285 -5.4180 23 6 5.3718 -8.4374 -4.0466 24 6 5.9790 -3.6994 -0.3375 25 6 5.3551 -2.4722 -0.2292 26 1 -0.4850 0.8401 -0.0004 27 1 2.1487 -3.5260 0.0027 28 1 3.2706 -5.7079 -0.1896 29 1 6.9115 -6.1351 0.0055 30 1 5.3326 -6.9513 0.1034 31 1 6.5017 -5.8647 -2.3748 32 1 7.6878 -7.8275 -1.5689 33 1 6.1086 -8.6429 -1.4712 34 1 8.5978 -9.3826 -3.2908 35 1 7.1058 -10.3292 -3.0627 36 1 8.1147 -10.8781 -5.2420 37 1 8.1138 -9.1564 -5.6962 38 1 5.6542 -10.8585 -5.0828 39 1 6.1662 -10.2958 -6.6921 40 1 4.8580 -9.2145 -3.4808 41 1 4.8141 -7.5040 -3.9715 42 1 7.0535 -3.7517 -0.4333 43 1 5.9410 -1.5649 -0.2407 RHF calculation, no. of doubly occupied orbitals= 55 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000038044801.mol2 43 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 08:03:26 Heat of formation + Delta-G solvation = -80.501657 kcal Electronic energy + Delta-G solvation = -22316.998569 eV Core-core repulsion = 18940.351795 eV Total energy + Delta-G solvation = -3376.646774 eV No. of doubly occupied orbitals = 55 Molecular weight (most abundant/longest-lived isotopes) = 291.162 amu Computer time = 1.76 seconds Orbital eigenvalues (eV) -40.90527 -40.36271 -38.76837 -36.98492 -34.67772 -34.34890 -32.67496 -31.80629 -30.70537 -27.72230 -26.52427 -25.90601 -24.68185 -23.68149 -22.59341 -21.94236 -20.95633 -19.79964 -19.08726 -17.45534 -17.03416 -16.70904 -16.65391 -15.97497 -15.82695 -15.81891 -15.57873 -15.52698 -15.28257 -14.96472 -14.35325 -14.30552 -14.16613 -14.08076 -13.52197 -13.36624 -13.20569 -13.03331 -12.70450 -12.47033 -12.35986 -12.20725 -12.05560 -11.90416 -11.86603 -11.40831 -11.26972 -11.19415 -10.89944 -10.36397 -9.78639 -9.30701 -8.96045 -8.50075 -6.22720 0.59007 0.63746 1.31029 1.35491 1.51759 2.27993 2.73613 3.00909 3.03406 3.15853 3.43623 3.82055 3.90921 4.01945 4.04046 4.07358 4.11363 4.18772 4.29117 4.44166 4.53034 4.59098 4.60241 4.66481 4.74222 4.76247 4.79103 4.88374 4.92710 5.00178 5.00610 5.11641 5.12555 5.27208 5.29421 5.39691 5.42981 5.57887 5.76983 5.83644 5.92059 6.12481 6.27593 6.34078 6.49970 6.84255 7.58984 8.61734 Molecular weight = 291.16amu Principal moments of inertia in cm(-1) A = 0.027289 B = 0.002605 C = 0.002502 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1025.792900 B =10747.289182 C =11186.277987 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.924 5.924 2 C 0.008 3.992 3 Si 0.972 3.028 4 H -0.266 1.266 5 H -0.267 1.267 6 H -0.262 1.262 7 C -0.399 4.399 8 H 0.079 0.921 9 O -0.246 6.246 10 C 0.119 3.881 11 C -0.240 4.240 12 C -0.055 4.055 13 C -0.150 4.150 14 C 0.122 3.878 15 N -0.697 5.697 16 C 0.071 3.929 17 C -0.113 4.113 18 H 0.069 0.931 19 C -0.115 4.115 20 C -0.152 4.152 21 C 0.050 3.950 22 O -0.412 6.412 23 C 0.072 3.928 24 C -0.061 4.061 25 C -0.193 4.193 26 H 0.285 0.715 27 H 0.104 0.896 28 H 0.130 0.870 29 H 0.052 0.948 30 H 0.079 0.921 31 H 0.343 0.657 32 H 0.044 0.956 33 H 0.075 0.925 34 H 0.077 0.923 35 H 0.071 0.929 36 H 0.091 0.909 37 H 0.064 0.936 38 H 0.055 0.945 39 H 0.099 0.901 40 H 0.050 0.950 41 H 0.087 0.913 42 H 0.153 0.847 43 H 0.128 0.872 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 18.862 -20.443 -6.189 28.495 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.565 5.565 2 C -0.190 4.190 3 Si 0.795 3.205 4 H -0.191 1.191 5 H -0.191 1.191 6 H -0.187 1.187 7 C -0.476 4.476 8 H 0.097 0.903 9 O -0.153 6.153 10 C 0.070 3.930 11 C -0.259 4.259 12 C -0.073 4.073 13 C -0.151 4.151 14 C -0.006 4.006 15 N -0.329 5.329 16 C -0.058 4.058 17 C -0.132 4.132 18 H 0.088 0.912 19 C -0.153 4.153 20 C -0.190 4.190 21 C -0.026 4.026 22 O -0.332 6.332 23 C -0.004 4.004 24 C -0.079 4.079 25 C -0.212 4.212 26 H 0.094 0.906 27 H 0.122 0.878 28 H 0.147 0.853 29 H 0.070 0.930 30 H 0.098 0.902 31 H 0.162 0.838 32 H 0.063 0.937 33 H 0.094 0.906 34 H 0.096 0.904 35 H 0.090 0.910 36 H 0.110 0.890 37 H 0.082 0.918 38 H 0.073 0.927 39 H 0.117 0.883 40 H 0.068 0.932 41 H 0.105 0.895 42 H 0.171 0.829 43 H 0.146 0.854 Dipole moment (debyes) X Y Z Total from point charges 18.051 -20.283 -6.331 27.881 hybrid contribution 0.236 0.953 0.426 1.070 sum 18.287 -19.330 -5.905 27.257 Atomic orbital electron populations 1.69735 1.06946 1.29604 1.50253 1.25307 0.95904 1.02233 0.95544 0.85193 0.78777 0.77301 0.79276 1.19089 1.19146 1.18659 1.20703 0.78176 0.96081 1.52603 0.90311 1.83508 1.21159 1.27525 1.83158 1.19706 0.93318 0.85010 0.94993 1.21282 1.00076 0.93380 1.11160 1.20881 0.94831 0.95798 0.95810 1.19692 0.92942 0.95500 1.06918 1.20616 0.98582 0.92212 0.89221 1.60477 1.57362 1.04956 1.10085 1.21928 0.97362 0.91337 0.95203 1.21718 0.96781 0.98731 0.95970 0.91242 1.21613 1.00806 0.96333 0.96504 1.22163 0.97241 1.03103 0.96466 1.22772 0.91950 0.85796 1.02107 1.87930 1.77066 1.41298 1.26869 1.22564 0.96286 1.00280 0.81294 1.20958 1.00273 0.90082 0.96603 1.20509 0.90461 0.99875 1.10340 0.90572 0.87773 0.85259 0.93003 0.90213 0.83841 0.93738 0.90634 0.90385 0.91036 0.89043 0.91758 0.92651 0.88285 0.93186 0.89484 0.82907 0.85418 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.92 -56.14 13.96 21.61 0.30 -55.84 16 2 C 0.01 0.49 5.49 84.83 0.47 0.95 16 3 Si 0.97 46.06 28.62 68.60 1.96 48.03 16 4 H -0.27 -12.12 7.11 99.48 0.71 -11.41 16 5 H -0.27 -11.78 7.11 99.48 0.71 -11.07 16 6 H -0.26 -12.36 7.11 99.48 0.71 -11.65 16 7 C -0.40 -24.01 9.95 67.92 0.68 -23.33 16 8 H 0.08 4.98 5.44 -2.91 -0.02 4.97 16 9 O -0.25 -13.58 8.59 -22.69 -0.19 -13.78 16 10 C 0.12 5.62 6.65 22.58 0.15 5.77 16 11 C -0.24 -10.76 9.17 22.39 0.21 -10.55 16 12 C -0.05 -1.92 9.69 22.25 0.22 -1.70 16 13 C -0.15 -4.30 5.40 -19.84 -0.11 -4.41 16 14 C 0.12 2.49 5.81 85.55 0.50 2.99 16 15 N -0.70 -13.45 6.00 -517.91 -3.11 -16.56 16 16 C 0.07 1.03 5.08 86.30 0.44 1.47 16 17 C -0.11 -1.71 2.53 -10.70 -0.03 -1.74 16 18 H 0.07 1.19 8.14 -2.38 -0.02 1.17 16 19 C -0.11 -1.29 5.32 30.71 0.16 -1.13 16 20 C -0.15 -1.73 6.13 30.69 0.19 -1.54 16 21 C 0.05 0.73 6.84 72.01 0.49 1.22 16 22 O -0.41 -9.09 10.77 -148.98 -1.60 -10.70 16 23 C 0.07 1.42 5.99 72.02 0.43 1.85 16 24 C -0.06 -1.78 9.69 22.25 0.22 -1.56 16 25 C -0.19 -7.29 9.99 22.39 0.22 -7.07 16 26 H 0.28 15.82 8.31 -92.71 -0.77 15.05 16 27 H 0.10 5.20 5.64 -2.91 -0.02 5.18 16 28 H 0.13 3.98 8.06 -2.91 -0.02 3.95 16 29 H 0.05 0.88 8.09 -2.38 -0.02 0.86 16 30 H 0.08 1.57 8.08 -2.38 -0.02 1.55 16 31 H 0.34 6.65 8.72 -89.69 -0.78 5.86 16 32 H 0.04 0.55 8.14 -2.39 -0.02 0.53 16 33 H 0.08 1.08 8.14 -2.39 -0.02 1.06 16 34 H 0.08 0.73 8.14 -2.39 -0.02 0.71 16 35 H 0.07 0.73 8.14 -2.39 -0.02 0.71 16 36 H 0.09 0.69 8.14 -2.38 -0.02 0.67 16 37 H 0.06 0.83 8.14 -2.39 -0.02 0.81 16 38 H 0.06 0.71 8.14 -2.39 -0.02 0.69 16 39 H 0.10 1.21 8.14 -2.39 -0.02 1.19 16 40 H 0.05 0.92 8.14 -2.39 -0.02 0.90 16 41 H 0.09 2.04 7.83 -2.39 -0.02 2.02 16 42 H 0.15 3.21 8.06 -2.91 -0.02 3.19 16 43 H 0.13 4.46 8.06 -2.91 -0.02 4.44 16 Total: -1.00 -68.07 350.69 1.80 -66.27 By element: Atomic # 1 Polarization: 21.15 SS G_CDS: 0.21 Total: 21.36 kcal Atomic # 6 Polarization: -43.01 SS G_CDS: 4.23 Total: -38.78 kcal Atomic # 7 Polarization: -69.59 SS G_CDS: -2.81 Total: -72.40 kcal Atomic # 8 Polarization: -22.68 SS G_CDS: -1.80 Total: -24.48 kcal Atomic # 14 Polarization: 46.06 SS G_CDS: 1.96 Total: 48.03 kcal Total: -68.07 1.80 -66.27 kcal The number of atoms in the molecule is 43 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000038044801.mol2 43 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -14.233 kcal (2) G-P(sol) polarization free energy of solvation -68.070 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -82.303 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 1.801 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -66.269 kcal (6) G-S(sol) free energy of system = (1) + (5) -80.502 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.76 seconds