Wall clock time and date at job start Tue Mar 31 2020 08:01:06 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31555 * 1 3 3 Si 1.86799 * 120.00063 * 2 1 4 4 H 1.48495 * 109.46981 * 180.02562 * 3 2 1 5 5 H 1.48495 * 109.46956 * 300.00167 * 3 2 1 6 6 H 1.48502 * 109.47193 * 59.99860 * 3 2 1 7 7 C 1.38658 * 119.99945 * 180.02562 * 2 1 3 8 8 H 1.07991 * 119.99971 * 180.02562 * 7 2 1 9 9 O 1.34827 * 119.99759 * 359.97438 * 7 2 1 10 10 C 1.35759 * 116.99810 * 185.07695 * 9 7 2 11 11 C 1.38877 * 120.06535 * 354.49826 * 10 9 7 12 12 C 1.38098 * 119.92829 * 180.30023 * 11 10 9 13 13 C 1.38306 * 120.06616 * 359.42700 * 12 11 10 14 14 C 1.50705 * 119.92695 * 180.29555 * 13 12 11 15 15 N 1.46900 * 109.47516 * 270.29763 * 14 13 12 16 16 C 1.46894 * 111.00106 * 182.28778 * 15 14 13 17 17 C 1.53003 * 110.01461 * 304.10539 * 16 15 14 18 18 O 1.42899 * 109.47178 * 300.53800 * 17 16 15 19 19 C 1.53871 * 110.03261 * 182.66393 * 16 15 14 20 20 C 1.54261 * 106.60153 * 240.71385 * 19 16 15 21 21 C 1.54892 * 104.19546 * 23.60645 * 20 19 16 22 22 C 1.54264 * 110.03308 * 65.49516 * 16 15 14 23 23 C 1.38295 * 120.13900 * 0.59828 * 13 12 11 24 24 C 1.38096 * 120.06965 * 359.67706 * 23 13 12 25 25 H 0.97001 * 120.00015 * 359.97438 * 1 2 3 26 26 H 1.07995 * 120.03635 * 0.03162 * 11 10 9 27 27 H 1.08004 * 119.96804 * 179.72543 * 12 11 10 28 28 H 1.08996 * 109.47654 * 30.30400 * 14 13 12 29 29 H 1.09006 * 109.46464 * 150.29807 * 14 13 12 30 30 H 1.00901 * 110.99973 * 306.24054 * 15 14 13 31 31 H 1.08999 * 109.47350 * 60.54332 * 17 16 15 32 32 H 1.09005 * 109.47055 * 180.54052 * 17 16 15 33 33 H 0.96698 * 113.99578 * 179.97438 * 18 17 16 34 34 H 1.09002 * 110.03134 * 359.97438 * 19 16 15 35 35 H 1.09005 * 110.03227 * 121.42942 * 19 16 15 36 36 H 1.09007 * 110.48676 * 264.93441 * 20 19 16 37 37 H 1.09000 * 110.48749 * 142.29191 * 20 19 16 38 38 H 1.08994 * 110.75963 * 203.74278 * 21 20 19 39 39 H 1.09007 * 110.75043 * 80.37214 * 21 20 19 40 40 H 1.08996 * 110.48675 * 214.34868 * 22 16 15 41 41 H 1.08996 * 110.49133 * 336.99748 * 22 16 15 42 42 H 1.08006 * 119.96831 * 179.69757 * 23 13 12 43 43 H 1.08003 * 120.03769 * 179.97438 * 24 23 13 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3156 0.0000 0.0000 3 14 2.2496 1.6177 0.0000 4 1 3.7095 1.3463 -0.0006 5 1 1.8908 2.3964 -1.2124 6 1 1.8908 2.3965 1.2125 7 6 2.0088 -1.2008 -0.0005 8 1 3.0887 -1.2008 -0.0001 9 8 1.3346 -2.3684 -0.0005 10 6 2.0699 -3.5047 0.1060 11 6 3.4571 -3.4394 0.0936 12 6 4.2023 -4.5976 0.1959 13 6 3.5685 -5.8204 0.3225 14 6 4.3849 -7.0817 0.4406 15 7 4.6445 -7.6243 -0.8996 16 6 5.3932 -8.8857 -0.8209 17 6 6.6893 -8.6771 -0.0351 18 8 7.4865 -7.6854 -0.6855 19 6 5.7105 -9.3995 -2.2362 20 6 5.0309 -10.7781 -2.3672 21 6 3.8887 -10.7394 -1.3217 22 6 4.5318 -9.9700 -0.1413 23 6 2.1873 -5.8887 0.3346 24 6 1.4365 -4.7346 0.2270 25 1 -0.4850 0.8400 0.0004 26 1 3.9526 -2.4844 -0.0003 27 1 5.2811 -4.5480 0.1818 28 1 5.3318 -6.8570 0.9313 29 1 3.8356 -7.8160 1.0298 30 1 3.7847 -7.7457 -1.4134 31 1 6.4520 -8.3468 0.9762 32 1 7.2421 -9.6156 0.0097 33 1 8.3252 -7.5013 -0.2409 34 1 5.3086 -8.7131 -2.9814 35 1 6.7883 -9.5009 -2.3637 36 1 5.7364 -11.5751 -2.1322 37 1 4.6256 -10.9098 -3.3705 38 1 3.6083 -11.7481 -1.0184 39 1 3.0265 -10.1983 -1.7115 40 1 5.1566 -10.6365 0.4532 41 1 3.7622 -9.5120 0.4800 42 1 1.6953 -6.8455 0.4287 43 1 0.3579 -4.7886 0.2361 RHF calculation, no. of doubly occupied orbitals= 55 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000053045204.mol2 43 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 08:01:06 Heat of formation + Delta-G solvation = -57.606713 kcal Electronic energy + Delta-G solvation = -23014.120781 eV Core-core repulsion = 19638.466806 eV Total energy + Delta-G solvation = -3375.653975 eV No. of doubly occupied orbitals = 55 Molecular weight (most abundant/longest-lived isotopes) = 291.162 amu Computer time = 0.57 seconds Orbital eigenvalues (eV) -39.80079 -38.87337 -36.67794 -36.16807 -33.98016 -32.23022 -30.16481 -30.03720 -28.90802 -27.99849 -25.65115 -24.79746 -23.52124 -21.90312 -20.99182 -20.18303 -19.11607 -17.93570 -17.29588 -16.94710 -16.40077 -15.93098 -14.93765 -14.61521 -14.52160 -14.34193 -14.25492 -13.74986 -13.56665 -13.50639 -13.21321 -12.81108 -12.62715 -12.40804 -11.97687 -11.71223 -11.61008 -11.49041 -11.25686 -11.22391 -11.12465 -10.82153 -10.71989 -10.61036 -10.58165 -10.40299 -10.37946 -9.97815 -9.27951 -8.80365 -8.20224 -8.10372 -7.12951 -6.42097 -4.00574 2.27182 2.35026 3.14545 3.16189 3.21876 3.95196 3.99694 4.27872 4.45110 4.49548 4.71354 4.83713 5.07432 5.12167 5.14174 5.24180 5.25411 5.29970 5.37239 5.40205 5.46307 5.52735 5.60866 5.67236 5.75239 5.78017 5.86248 5.92295 5.93592 6.02177 6.15598 6.24436 6.26668 6.49130 6.75568 6.96761 7.09087 7.24512 7.28050 7.46956 7.48814 7.55504 7.64076 7.88450 8.03688 9.04000 9.74762 10.76199 Molecular weight = 291.16amu Principal moments of inertia in cm(-1) A = 0.028763 B = 0.003042 C = 0.002876 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 973.227024 B = 9202.519593 C = 9734.043233 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.864 5.864 2 C 0.038 3.962 3 Si 0.941 3.059 4 H -0.266 1.266 5 H -0.276 1.276 6 H -0.276 1.276 7 C -0.390 4.390 8 H 0.093 0.907 9 O -0.180 6.180 10 C 0.156 3.844 11 C -0.235 4.235 12 C -0.047 4.047 13 C -0.183 4.183 14 C 0.114 3.886 15 N -0.659 5.659 16 C 0.114 3.886 17 C 0.090 3.910 18 O -0.552 6.552 19 C -0.107 4.107 20 C -0.128 4.128 21 C -0.123 4.123 22 C -0.158 4.158 23 C -0.070 4.070 24 C -0.194 4.194 25 H 0.269 0.731 26 H 0.126 0.874 27 H 0.107 0.893 28 H 0.070 0.930 29 H 0.027 0.973 30 H 0.341 0.659 31 H 0.044 0.956 32 H 0.042 0.958 33 H 0.370 0.630 34 H 0.075 0.925 35 H 0.070 0.930 36 H 0.062 0.938 37 H 0.065 0.935 38 H 0.065 0.935 39 H 0.068 0.932 40 H 0.068 0.932 41 H 0.072 0.928 42 H 0.106 0.894 43 H 0.115 0.885 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 11.740 -19.566 -0.100 22.819 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.499 5.499 2 C -0.166 4.166 3 Si 0.765 3.235 4 H -0.191 1.191 5 H -0.202 1.202 6 H -0.202 1.202 7 C -0.467 4.467 8 H 0.110 0.890 9 O -0.083 6.083 10 C 0.102 3.898 11 C -0.255 4.255 12 C -0.066 4.066 13 C -0.184 4.184 14 C -0.013 4.013 15 N -0.290 5.290 16 C 0.023 3.977 17 C 0.012 3.988 18 O -0.355 6.355 19 C -0.145 4.145 20 C -0.166 4.166 21 C -0.160 4.160 22 C -0.197 4.197 23 C -0.089 4.089 24 C -0.214 4.214 25 H 0.079 0.921 26 H 0.144 0.856 27 H 0.126 0.874 28 H 0.089 0.911 29 H 0.045 0.955 30 H 0.160 0.840 31 H 0.062 0.938 32 H 0.060 0.940 33 H 0.216 0.784 34 H 0.094 0.906 35 H 0.088 0.912 36 H 0.081 0.919 37 H 0.084 0.916 38 H 0.084 0.916 39 H 0.086 0.914 40 H 0.086 0.914 41 H 0.091 0.909 42 H 0.124 0.876 43 H 0.133 0.867 Dipole moment (debyes) X Y Z Total from point charges 11.367 -18.946 -0.644 22.104 hybrid contribution 0.231 0.218 0.782 0.843 sum 11.598 -18.729 0.137 22.030 Atomic orbital electron populations 1.70050 1.05956 1.27493 1.46421 1.25287 0.95837 0.98822 0.96626 0.85649 0.79186 0.80406 0.78211 1.19070 1.20163 1.20180 1.21383 0.91847 0.80833 1.52591 0.89007 1.83976 1.34392 1.11482 1.78457 1.19395 0.90317 0.88007 0.92086 1.21175 0.93764 0.98970 1.11544 1.20585 0.98400 0.91536 0.96029 1.19128 0.93009 0.93915 1.12368 1.20709 0.98020 0.93069 0.89550 1.60714 1.25948 1.25451 1.16898 1.21599 0.92226 0.88663 0.95245 1.22249 0.91169 0.90517 0.94891 1.86653 1.34282 1.60416 1.54148 1.22131 1.00940 0.95550 0.95870 1.22427 0.97454 0.97557 0.99129 1.22453 0.98023 1.00011 0.95559 1.23124 0.99817 0.98370 0.98383 1.20463 0.93005 0.96495 0.98914 1.20153 0.99410 0.90395 1.11418 0.92125 0.85645 0.87447 0.91146 0.95484 0.84029 0.93817 0.93970 0.78436 0.90596 0.91174 0.91920 0.91619 0.91633 0.91354 0.91359 0.90895 0.87631 0.86697 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.86 -25.66 13.67 55.48 0.76 -24.90 16 2 C 0.04 1.07 5.49 -17.51 -0.10 0.97 16 3 Si 0.94 20.84 29.55 -169.99 -5.02 15.81 16 4 H -0.27 -5.66 7.11 56.52 0.40 -5.26 16 5 H -0.28 -5.99 7.11 56.52 0.40 -5.59 16 6 H -0.28 -5.98 7.11 56.52 0.40 -5.58 16 7 C -0.39 -11.10 9.49 30.89 0.29 -10.81 16 8 H 0.09 2.43 5.20 -52.49 -0.27 2.16 16 9 O -0.18 -5.22 9.76 0.03 0.00 -5.22 16 10 C 0.16 3.85 6.65 -39.11 -0.26 3.59 16 11 C -0.24 -5.28 9.17 -39.40 -0.36 -5.64 16 12 C -0.05 -0.90 9.69 -39.61 -0.38 -1.28 16 13 C -0.18 -3.19 5.37 -104.57 -0.56 -3.75 16 14 C 0.11 1.59 5.04 -4.97 -0.03 1.57 16 15 N -0.66 -8.70 5.87 -100.09 -0.59 -9.29 16 16 C 0.11 1.21 0.62 -130.49 -0.08 1.13 16 17 C 0.09 0.89 5.10 37.16 0.19 1.08 16 18 O -0.55 -6.18 13.07 -35.23 -0.46 -6.64 16 19 C -0.11 -1.09 6.01 -25.62 -0.15 -1.25 16 20 C -0.13 -1.06 6.83 -25.07 -0.17 -1.23 16 21 C -0.12 -1.02 6.91 -24.74 -0.17 -1.19 16 22 C -0.16 -1.43 5.81 -25.07 -0.15 -1.57 16 23 C -0.07 -1.26 9.69 -39.61 -0.38 -1.64 16 24 C -0.19 -4.18 9.99 -39.40 -0.39 -4.58 16 25 H 0.27 7.30 8.31 -40.82 -0.34 6.96 16 26 H 0.13 2.84 5.64 -52.49 -0.30 2.54 16 27 H 0.11 1.88 8.06 -52.48 -0.42 1.46 16 28 H 0.07 0.98 6.37 -51.93 -0.33 0.65 16 29 H 0.03 0.35 6.15 -51.93 -0.32 0.03 16 30 H 0.34 4.55 8.69 -39.29 -0.34 4.21 16 31 H 0.04 0.43 6.48 -51.93 -0.34 0.09 16 32 H 0.04 0.34 8.14 -51.93 -0.42 -0.08 16 33 H 0.37 2.51 9.12 45.56 0.42 2.92 16 34 H 0.08 0.88 7.92 -51.93 -0.41 0.47 16 35 H 0.07 0.73 7.49 -51.93 -0.39 0.34 16 36 H 0.06 0.47 8.14 -51.93 -0.42 0.04 16 37 H 0.07 0.51 8.14 -51.93 -0.42 0.09 16 38 H 0.06 0.48 8.14 -51.93 -0.42 0.06 16 39 H 0.07 0.60 8.14 -51.93 -0.42 0.18 16 40 H 0.07 0.55 7.85 -51.93 -0.41 0.14 16 41 H 0.07 0.71 6.07 -51.93 -0.32 0.40 16 42 H 0.11 1.59 8.06 -52.48 -0.42 1.16 16 43 H 0.11 2.39 8.06 -52.48 -0.42 1.97 16 LS Contribution 345.28 15.07 5.20 5.20 Total: -1.00 -31.95 345.28 -8.34 -40.28 By element: Atomic # 1 Polarization: 14.88 SS G_CDS: -5.52 Total: 9.36 kcal Atomic # 6 Polarization: -21.90 SS G_CDS: -2.71 Total: -24.61 kcal Atomic # 7 Polarization: -34.36 SS G_CDS: 0.17 Total: -34.19 kcal Atomic # 8 Polarization: -11.40 SS G_CDS: -0.46 Total: -11.86 kcal Atomic # 14 Polarization: 20.84 SS G_CDS: -5.02 Total: 15.81 kcal Total LS contribution 5.20 Total: 5.20 kcal Total: -31.95 -8.34 -40.28 kcal The number of atoms in the molecule is 43 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000053045204.mol2 43 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -17.324 kcal (2) G-P(sol) polarization free energy of solvation -31.945 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -49.270 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.337 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -40.282 kcal (6) G-S(sol) free energy of system = (1) + (5) -57.607 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.57 seconds