Wall clock time and date at job start Tue Mar 31 2020 08:01:04 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31555 * 1 3 3 Si 1.86799 * 120.00063 * 2 1 4 4 H 1.48495 * 109.46981 * 180.02562 * 3 2 1 5 5 H 1.48495 * 109.46956 * 300.00167 * 3 2 1 6 6 H 1.48502 * 109.47193 * 59.99860 * 3 2 1 7 7 C 1.38658 * 119.99945 * 180.02562 * 2 1 3 8 8 H 1.07991 * 119.99971 * 180.02562 * 7 2 1 9 9 O 1.34827 * 119.99759 * 359.97438 * 7 2 1 10 10 C 1.35759 * 116.99810 * 185.07695 * 9 7 2 11 11 C 1.38877 * 120.06535 * 354.49826 * 10 9 7 12 12 C 1.38098 * 119.92829 * 180.30023 * 11 10 9 13 13 C 1.38306 * 120.06616 * 359.42700 * 12 11 10 14 14 C 1.50705 * 119.92695 * 180.29555 * 13 12 11 15 15 N 1.46900 * 109.47516 * 270.29763 * 14 13 12 16 16 C 1.46894 * 111.00106 * 182.28778 * 15 14 13 17 17 C 1.53003 * 110.01461 * 304.10539 * 16 15 14 18 18 O 1.42899 * 109.47178 * 300.53800 * 17 16 15 19 19 C 1.53871 * 110.03261 * 182.66393 * 16 15 14 20 20 C 1.54261 * 106.60153 * 240.71385 * 19 16 15 21 21 C 1.54892 * 104.19546 * 23.60645 * 20 19 16 22 22 C 1.54264 * 110.03308 * 65.49516 * 16 15 14 23 23 C 1.38295 * 120.13900 * 0.59828 * 13 12 11 24 24 C 1.38096 * 120.06965 * 359.67706 * 23 13 12 25 25 H 0.97001 * 120.00015 * 359.97438 * 1 2 3 26 26 H 1.07995 * 120.03635 * 0.03162 * 11 10 9 27 27 H 1.08004 * 119.96804 * 179.72543 * 12 11 10 28 28 H 1.08996 * 109.47654 * 30.30400 * 14 13 12 29 29 H 1.09006 * 109.46464 * 150.29807 * 14 13 12 30 30 H 1.00901 * 110.99973 * 306.24054 * 15 14 13 31 31 H 1.08999 * 109.47350 * 60.54332 * 17 16 15 32 32 H 1.09005 * 109.47055 * 180.54052 * 17 16 15 33 33 H 0.96698 * 113.99578 * 179.97438 * 18 17 16 34 34 H 1.09002 * 110.03134 * 359.97438 * 19 16 15 35 35 H 1.09005 * 110.03227 * 121.42942 * 19 16 15 36 36 H 1.09007 * 110.48676 * 264.93441 * 20 19 16 37 37 H 1.09000 * 110.48749 * 142.29191 * 20 19 16 38 38 H 1.08994 * 110.75963 * 203.74278 * 21 20 19 39 39 H 1.09007 * 110.75043 * 80.37214 * 21 20 19 40 40 H 1.08996 * 110.48675 * 214.34868 * 22 16 15 41 41 H 1.08996 * 110.49133 * 336.99748 * 22 16 15 42 42 H 1.08006 * 119.96831 * 179.69757 * 23 13 12 43 43 H 1.08003 * 120.03769 * 179.97438 * 24 23 13 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3156 0.0000 0.0000 3 14 2.2496 1.6177 0.0000 4 1 3.7095 1.3463 -0.0006 5 1 1.8908 2.3964 -1.2124 6 1 1.8908 2.3965 1.2125 7 6 2.0088 -1.2008 -0.0005 8 1 3.0887 -1.2008 -0.0001 9 8 1.3346 -2.3684 -0.0005 10 6 2.0699 -3.5047 0.1060 11 6 3.4571 -3.4394 0.0936 12 6 4.2023 -4.5976 0.1959 13 6 3.5685 -5.8204 0.3225 14 6 4.3849 -7.0817 0.4406 15 7 4.6445 -7.6243 -0.8996 16 6 5.3932 -8.8857 -0.8209 17 6 6.6893 -8.6771 -0.0351 18 8 7.4865 -7.6854 -0.6855 19 6 5.7105 -9.3995 -2.2362 20 6 5.0309 -10.7781 -2.3672 21 6 3.8887 -10.7394 -1.3217 22 6 4.5318 -9.9700 -0.1413 23 6 2.1873 -5.8887 0.3346 24 6 1.4365 -4.7346 0.2270 25 1 -0.4850 0.8400 0.0004 26 1 3.9526 -2.4844 -0.0003 27 1 5.2811 -4.5480 0.1818 28 1 5.3318 -6.8570 0.9313 29 1 3.8356 -7.8160 1.0298 30 1 3.7847 -7.7457 -1.4134 31 1 6.4520 -8.3468 0.9762 32 1 7.2421 -9.6156 0.0097 33 1 8.3252 -7.5013 -0.2409 34 1 5.3086 -8.7131 -2.9814 35 1 6.7883 -9.5009 -2.3637 36 1 5.7364 -11.5751 -2.1322 37 1 4.6256 -10.9098 -3.3705 38 1 3.6083 -11.7481 -1.0184 39 1 3.0265 -10.1983 -1.7115 40 1 5.1566 -10.6365 0.4532 41 1 3.7622 -9.5120 0.4800 42 1 1.6953 -6.8455 0.4287 43 1 0.3579 -4.7886 0.2361 RHF calculation, no. of doubly occupied orbitals= 55 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000053045204.mol2 43 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 08:01:04 Heat of formation + Delta-G solvation = -80.567773 kcal Electronic energy + Delta-G solvation = -23015.116448 eV Core-core repulsion = 19638.466806 eV Total energy + Delta-G solvation = -3376.649641 eV No. of doubly occupied orbitals = 55 Molecular weight (most abundant/longest-lived isotopes) = 291.162 amu Computer time = 0.60 seconds Orbital eigenvalues (eV) -40.92614 -40.35856 -38.37225 -36.92505 -35.13934 -34.19963 -31.79242 -31.33068 -29.64425 -29.09084 -27.49796 -25.97633 -24.56926 -23.60040 -22.15291 -21.31263 -19.94958 -19.81860 -18.82657 -18.05163 -17.37115 -16.85454 -16.42854 -16.21053 -15.73711 -15.58191 -15.48486 -15.28149 -14.94085 -14.61778 -14.44647 -14.29738 -14.06220 -13.61001 -13.35242 -13.06187 -12.96685 -12.58361 -12.46996 -12.29450 -12.25694 -12.10131 -11.93933 -11.84406 -11.75932 -11.45503 -11.34023 -11.16466 -10.81666 -10.71433 -9.76837 -9.19899 -8.87201 -8.47448 -6.15398 0.61100 0.68976 1.34756 1.42961 1.53244 2.17791 2.78414 3.09166 3.30162 3.50935 3.53221 3.72702 3.81547 4.05666 4.09961 4.17108 4.21713 4.36441 4.42499 4.46298 4.53578 4.57845 4.61927 4.68432 4.73789 4.83135 4.87570 4.90438 4.99180 5.10049 5.10952 5.16886 5.17138 5.25313 5.31201 5.44590 5.50048 5.57655 5.72722 5.84393 6.03408 6.20743 6.32844 6.53690 6.97548 7.03855 7.78529 8.76135 Molecular weight = 291.16amu Principal moments of inertia in cm(-1) A = 0.028763 B = 0.003042 C = 0.002876 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 973.227024 B = 9202.519593 C = 9734.043233 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.921 5.921 2 C -0.023 4.023 3 Si 1.019 2.981 4 H -0.253 1.253 5 H -0.268 1.268 6 H -0.267 1.267 7 C -0.413 4.413 8 H 0.100 0.900 9 O -0.233 6.233 10 C 0.114 3.886 11 C -0.244 4.244 12 C -0.050 4.050 13 C -0.156 4.156 14 C 0.121 3.879 15 N -0.673 5.673 16 C 0.111 3.889 17 C 0.087 3.913 18 O -0.577 6.577 19 C -0.106 4.106 20 C -0.123 4.123 21 C -0.122 4.122 22 C -0.152 4.152 23 C -0.059 4.059 24 C -0.204 4.204 25 H 0.273 0.727 26 H 0.115 0.885 27 H 0.130 0.870 28 H 0.076 0.924 29 H 0.049 0.951 30 H 0.338 0.662 31 H 0.047 0.953 32 H 0.062 0.938 33 H 0.387 0.613 34 H 0.055 0.945 35 H 0.067 0.933 36 H 0.075 0.925 37 H 0.067 0.933 38 H 0.079 0.921 39 H 0.060 0.940 40 H 0.083 0.917 41 H 0.069 0.931 42 H 0.147 0.853 43 H 0.113 0.887 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 13.956 -22.149 0.440 26.183 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.559 5.559 2 C -0.220 4.220 3 Si 0.838 3.162 4 H -0.176 1.176 5 H -0.193 1.193 6 H -0.192 1.192 7 C -0.489 4.489 8 H 0.117 0.883 9 O -0.140 6.140 10 C 0.064 3.936 11 C -0.263 4.263 12 C -0.068 4.068 13 C -0.157 4.157 14 C -0.007 4.007 15 N -0.304 5.304 16 C 0.019 3.981 17 C 0.009 3.991 18 O -0.383 6.383 19 C -0.144 4.144 20 C -0.160 4.160 21 C -0.160 4.160 22 C -0.191 4.191 23 C -0.078 4.078 24 C -0.223 4.223 25 H 0.082 0.918 26 H 0.133 0.867 27 H 0.147 0.853 28 H 0.095 0.905 29 H 0.067 0.933 30 H 0.157 0.843 31 H 0.065 0.935 32 H 0.081 0.919 33 H 0.235 0.765 34 H 0.074 0.926 35 H 0.085 0.915 36 H 0.094 0.906 37 H 0.086 0.914 38 H 0.098 0.902 39 H 0.079 0.921 40 H 0.102 0.898 41 H 0.087 0.913 42 H 0.164 0.836 43 H 0.132 0.868 Dipole moment (debyes) X Y Z Total from point charges 13.629 -21.591 -0.096 25.533 hybrid contribution -0.312 0.654 0.608 0.945 sum 13.317 -20.938 0.512 24.819 Atomic orbital electron populations 1.70188 1.07995 1.28725 1.49035 1.26586 0.96869 1.02699 0.95878 0.84529 0.78191 0.74843 0.78634 1.17605 1.19276 1.19185 1.21848 0.92464 0.81512 1.53111 0.88306 1.83938 1.35934 1.12598 1.81515 1.19933 0.91489 0.88017 0.94164 1.21239 0.93176 0.99907 1.12019 1.20865 0.99424 0.91122 0.95411 1.19642 0.93258 0.94962 1.07881 1.20660 0.97869 0.91561 0.90562 1.60652 1.26035 1.27534 1.16188 1.21733 0.92556 0.87933 0.95833 1.22343 0.90935 0.91253 0.94567 1.86601 1.35585 1.60938 1.55210 1.22096 1.00812 0.96274 0.95220 1.22402 0.97570 0.96646 0.99420 1.22461 0.97648 1.00623 0.95224 1.23076 0.99551 0.98022 0.98490 1.20869 0.93250 0.96816 0.96842 1.20437 0.99906 0.90570 1.11437 0.91826 0.86715 0.85254 0.90533 0.93311 0.84286 0.93517 0.91948 0.76461 0.92602 0.91463 0.90636 0.91409 0.90244 0.92085 0.89828 0.91283 0.83572 0.86847 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.92 -57.47 13.67 21.61 0.30 -57.18 16 2 C -0.02 -1.34 5.49 84.83 0.47 -0.87 16 3 Si 1.02 43.85 29.55 68.60 2.03 45.87 16 4 H -0.25 -10.11 7.11 99.48 0.71 -9.41 16 5 H -0.27 -11.03 7.11 99.48 0.71 -10.33 16 6 H -0.27 -10.95 7.11 99.48 0.71 -10.25 16 7 C -0.41 -24.74 9.49 67.92 0.64 -24.10 16 8 H 0.10 5.49 5.20 -2.92 -0.02 5.48 16 9 O -0.23 -14.42 9.76 -22.82 -0.22 -14.64 16 10 C 0.11 5.88 6.65 22.58 0.15 6.03 16 11 C -0.24 -11.19 9.17 22.39 0.21 -10.98 16 12 C -0.05 -1.84 9.69 22.25 0.22 -1.63 16 13 C -0.16 -5.04 5.37 -19.83 -0.11 -5.14 16 14 C 0.12 2.92 5.04 85.56 0.43 3.35 16 15 N -0.67 -15.80 5.87 -470.57 -2.76 -18.57 16 16 C 0.11 2.00 0.62 4.25 0.00 2.00 16 17 C 0.09 1.43 5.10 71.98 0.37 1.80 16 18 O -0.58 -11.40 13.07 -148.98 -1.95 -13.35 16 19 C -0.11 -1.93 6.01 31.32 0.19 -1.74 16 20 C -0.12 -1.67 6.83 31.67 0.22 -1.46 16 21 C -0.12 -1.62 6.91 31.89 0.22 -1.40 16 22 C -0.15 -2.17 5.81 31.67 0.18 -1.98 16 23 C -0.06 -2.00 9.69 22.25 0.22 -1.79 16 24 C -0.20 -8.87 9.99 22.39 0.22 -8.65 16 25 H 0.27 15.50 8.31 -92.71 -0.77 14.73 16 26 H 0.12 5.40 5.64 -2.91 -0.02 5.38 16 27 H 0.13 4.23 8.06 -2.91 -0.02 4.21 16 28 H 0.08 1.82 6.37 -2.39 -0.02 1.81 16 29 H 0.05 1.01 6.15 -2.38 -0.01 1.00 16 30 H 0.34 8.14 8.69 -89.69 -0.78 7.36 16 31 H 0.05 0.73 6.48 -2.39 -0.02 0.72 16 32 H 0.06 0.78 8.14 -2.38 -0.02 0.76 16 33 H 0.39 4.28 9.12 -74.06 -0.68 3.60 16 34 H 0.06 1.23 7.92 -2.39 -0.02 1.21 16 35 H 0.07 1.25 7.49 -2.38 -0.02 1.23 16 36 H 0.07 0.86 8.14 -2.38 -0.02 0.84 16 37 H 0.07 0.90 8.14 -2.39 -0.02 0.88 16 38 H 0.08 0.86 8.14 -2.39 -0.02 0.84 16 39 H 0.06 0.91 8.14 -2.38 -0.02 0.89 16 40 H 0.08 0.96 7.85 -2.39 -0.02 0.95 16 41 H 0.07 1.05 6.07 -2.39 -0.01 1.04 16 42 H 0.15 3.78 8.06 -2.91 -0.02 3.75 16 43 H 0.11 4.85 8.06 -2.91 -0.02 4.83 16 Total: -1.00 -73.50 345.28 0.59 -72.90 By element: Atomic # 1 Polarization: 31.94 SS G_CDS: -0.42 Total: 31.52 kcal Atomic # 6 Polarization: -50.18 SS G_CDS: 3.62 Total: -46.56 kcal Atomic # 7 Polarization: -73.28 SS G_CDS: -2.47 Total: -75.75 kcal Atomic # 8 Polarization: -25.82 SS G_CDS: -2.17 Total: -27.99 kcal Atomic # 14 Polarization: 43.85 SS G_CDS: 2.03 Total: 45.87 kcal Total: -73.50 0.59 -72.90 kcal The number of atoms in the molecule is 43 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000053045204.mol2 43 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -7.664 kcal (2) G-P(sol) polarization free energy of solvation -73.497 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -81.162 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 0.594 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -72.903 kcal (6) G-S(sol) free energy of system = (1) + (5) -80.568 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.61 seconds