Wall clock time and date at job start Tue Mar 31 2020 08:57:38 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31520 * 1 3 3 Si 1.86797 * 119.99517 * 2 1 4 4 H 1.48507 * 109.47299 * 239.99558 * 3 2 1 5 5 H 1.48504 * 109.47431 * 359.97438 * 3 2 1 6 6 H 1.48499 * 109.47323 * 119.99800 * 3 2 1 7 7 C 1.37873 * 120.00412 * 179.97438 * 2 1 3 8 8 H 1.08001 * 120.00120 * 180.02562 * 7 2 1 9 9 C 1.50694 * 119.99982 * 0.02562 * 7 2 1 10 10 N 1.46497 * 109.47287 * 180.02562 * 9 7 2 11 11 C 1.46500 * 120.00098 * 269.99749 * 10 9 7 12 12 C 1.50703 * 109.47340 * 270.00179 * 11 10 9 13 13 C 1.34512 * 125.78738 * 90.00052 * 12 11 10 14 14 C 1.41387 * 106.84082 * 180.02562 * 13 12 11 15 15 C 1.34520 * 106.83740 * 359.97438 * 14 13 12 16 16 O 1.34301 * 125.78740 * 269.68905 * 12 11 10 17 17 C 1.34777 * 120.00473 * 90.00172 * 10 9 7 18 18 O 1.21280 * 119.99624 * 359.97438 * 17 10 9 19 19 C 1.50692 * 120.00322 * 180.02562 * 17 10 9 20 20 C 1.53002 * 109.47423 * 179.97438 * 19 17 10 21 21 C 1.55238 * 110.58012 * 289.87626 * 20 19 17 22 22 C 1.54894 * 102.58338 * 203.33342 * 21 20 19 23 23 C 1.54266 * 104.31305 * 37.93170 * 22 21 20 24 24 C 1.53869 * 106.60031 * 336.32486 * 23 22 21 25 25 H 0.97000 * 120.00124 * 0.02562 * 1 2 3 26 26 H 1.08998 * 109.47303 * 59.99754 * 9 7 2 27 27 H 1.09007 * 109.47144 * 300.00011 * 9 7 2 28 28 H 1.09010 * 109.46801 * 30.00118 * 11 10 9 29 29 H 1.08995 * 109.47284 * 149.99464 * 11 10 9 30 30 H 1.08003 * 126.58719 * 0.02689 * 13 12 11 31 31 H 1.07997 * 126.58465 * 179.97438 * 14 13 12 32 32 H 1.07995 * 125.78881 * 179.97438 * 15 14 13 33 33 H 1.09008 * 109.47319 * 59.99595 * 19 17 10 34 34 H 1.09000 * 109.47571 * 299.99862 * 19 17 10 35 35 H 1.09006 * 110.43291 * 52.45876 * 20 19 17 36 36 H 1.08996 * 110.89448 * 85.04906 * 21 20 19 37 37 H 1.08993 * 110.76342 * 321.56571 * 21 20 19 38 38 H 1.09002 * 110.48891 * 279.18596 * 22 21 20 39 39 H 1.08998 * 110.48494 * 156.67683 * 22 21 20 40 40 H 1.09001 * 110.03084 * 95.60669 * 23 22 21 41 41 H 1.08996 * 110.03108 * 216.98559 * 23 22 21 42 42 H 1.08999 * 110.04012 * 119.28327 * 24 23 22 43 43 H 1.09006 * 110.02998 * 240.67078 * 24 23 22 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3152 0.0000 0.0000 3 14 2.2491 1.6178 0.0000 4 1 3.1029 1.6965 -1.2125 5 1 1.2840 2.7465 -0.0006 6 1 3.1028 1.6966 1.2125 7 6 2.0047 -1.1940 0.0005 8 1 3.0847 -1.1939 0.0010 9 6 1.2513 -2.4991 0.0005 10 7 2.2033 -3.6125 0.0018 11 6 2.6803 -4.1699 -1.2663 12 6 1.7639 -5.2843 -1.7016 13 6 0.6720 -5.1480 -2.4752 14 6 0.1167 -6.4389 -2.6310 15 6 0.9029 -7.2869 -1.9438 16 8 1.9024 -6.5828 -1.3877 17 6 2.6404 -4.1243 1.1695 18 8 2.2458 -3.6626 2.2193 19 6 3.6201 -5.2692 1.1707 20 6 3.9508 -5.6560 2.6136 21 6 4.8043 -4.5513 3.2927 22 6 5.5237 -5.3280 4.4234 23 6 5.8546 -6.6973 3.7947 24 6 4.8546 -6.9059 2.6440 25 1 -0.4850 0.8400 -0.0004 26 1 0.6249 -2.5571 -0.8896 27 1 0.6242 -2.5567 0.8903 28 1 2.6886 -3.3885 -2.0264 29 1 3.6896 -4.5597 -1.1351 30 1 0.2922 -4.2290 -2.8965 31 1 -0.7688 -6.6951 -3.1938 32 1 0.7574 -8.3535 -1.8571 33 1 4.5331 -4.9669 0.6576 34 1 3.1807 -6.1241 0.6567 35 1 3.0361 -5.8328 3.1794 36 1 4.1688 -3.7681 3.7060 37 1 5.5261 -4.1343 2.5906 38 1 4.8630 -5.4518 5.2814 39 1 6.4379 -4.8127 4.7182 40 1 6.8736 -6.6941 3.4077 41 1 5.7401 -7.4867 4.5376 42 1 5.3881 -7.0039 1.6986 43 1 4.2544 -7.7970 2.8279 RHF calculation, no. of doubly occupied orbitals= 55 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000060625911.mol2 43 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 08:57:38 Heat of formation + Delta-G solvation = -40.217064 kcal Electronic energy + Delta-G solvation = -23804.059034 eV Core-core repulsion = 20429.159131 eV Total energy + Delta-G solvation = -3374.899903 eV No. of doubly occupied orbitals = 55 Molecular weight (most abundant/longest-lived isotopes) = 291.162 amu Computer time = 0.49 seconds Orbital eigenvalues (eV) -42.31507 -39.34869 -37.54711 -35.12950 -32.84060 -32.68806 -31.26161 -30.10898 -28.49677 -27.64467 -25.72808 -25.04501 -22.55411 -21.47884 -20.49899 -20.37017 -19.63649 -18.46002 -17.25407 -16.59271 -16.27037 -15.73599 -15.62566 -15.04302 -14.84186 -14.57905 -14.25383 -13.86451 -13.29454 -13.19289 -12.63112 -12.59275 -12.56101 -12.42009 -12.14741 -11.62270 -11.53292 -11.31003 -11.14961 -10.96834 -10.86317 -10.77455 -10.56709 -10.41155 -10.40870 -10.23390 -10.16237 -9.72402 -9.65456 -8.83658 -8.43800 -8.29394 -7.76357 -6.04443 -4.09468 1.91166 2.83519 3.15256 3.31611 3.36461 3.38700 3.52680 4.00830 4.44437 4.73824 4.78102 4.86465 4.93991 5.14885 5.26042 5.27487 5.33111 5.38570 5.49324 5.56181 5.60331 5.75820 5.79037 5.84220 5.91582 5.95827 5.98727 6.01971 6.04353 6.18941 6.21873 6.24385 6.32532 6.44035 6.59994 6.71514 6.72552 7.04903 7.33414 7.45730 7.52998 7.91696 8.22596 8.36926 8.90082 9.10037 9.55746 11.03632 Molecular weight = 291.16amu Principal moments of inertia in cm(-1) A = 0.009715 B = 0.006378 C = 0.004081 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2881.527484 B = 4389.368291 C = 6859.820523 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.894 5.894 2 C 0.062 3.938 3 Si 0.897 3.103 4 H -0.277 1.277 5 H -0.287 1.287 6 H -0.276 1.276 7 C -0.527 4.527 8 H 0.057 0.943 9 C 0.247 3.753 10 N -0.597 5.597 11 C 0.192 3.808 12 C -0.025 4.025 13 C -0.195 4.195 14 C -0.213 4.213 15 C -0.052 4.052 16 O -0.177 6.177 17 C 0.509 3.491 18 O -0.532 6.532 19 C -0.137 4.137 20 C -0.074 4.074 21 C -0.117 4.117 22 C -0.126 4.126 23 C -0.123 4.123 24 C -0.121 4.121 25 H 0.264 0.736 26 H 0.032 0.968 27 H 0.043 0.957 28 H 0.114 0.886 29 H 0.084 0.916 30 H 0.149 0.851 31 H 0.144 0.856 32 H 0.197 0.803 33 H 0.085 0.915 34 H 0.088 0.912 35 H 0.080 0.920 36 H 0.079 0.921 37 H 0.061 0.939 38 H 0.062 0.938 39 H 0.060 0.940 40 H 0.059 0.941 41 H 0.058 0.942 42 H 0.062 0.938 43 H 0.060 0.940 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 7.702 -15.418 -1.848 17.334 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.533 5.533 2 C -0.140 4.140 3 Si 0.725 3.275 4 H -0.202 1.202 5 H -0.212 1.212 6 H -0.202 1.202 7 C -0.566 4.566 8 H 0.076 0.924 9 C 0.128 3.872 10 N -0.328 5.328 11 C 0.067 3.933 12 C -0.076 4.076 13 C -0.215 4.215 14 C -0.232 4.232 15 C -0.119 4.119 16 O -0.073 6.073 17 C 0.296 3.704 18 O -0.409 6.409 19 C -0.177 4.177 20 C -0.093 4.093 21 C -0.154 4.154 22 C -0.163 4.163 23 C -0.160 4.160 24 C -0.158 4.158 25 H 0.073 0.927 26 H 0.050 0.950 27 H 0.061 0.939 28 H 0.132 0.868 29 H 0.102 0.898 30 H 0.167 0.833 31 H 0.162 0.838 32 H 0.214 0.786 33 H 0.104 0.896 34 H 0.107 0.893 35 H 0.098 0.902 36 H 0.098 0.902 37 H 0.080 0.920 38 H 0.081 0.919 39 H 0.079 0.921 40 H 0.078 0.922 41 H 0.077 0.923 42 H 0.081 0.919 43 H 0.079 0.921 Dipole moment (debyes) X Y Z Total from point charges 7.553 -15.128 -1.092 16.944 hybrid contribution 0.045 0.876 -0.371 0.952 sum 7.598 -14.252 -1.463 16.217 Atomic orbital electron populations 1.69928 1.05995 1.27110 1.50242 1.24924 0.94850 0.99160 0.95051 0.86576 0.79529 0.82781 0.78626 1.20237 1.21209 1.20184 1.21386 0.93314 0.90596 1.51307 0.92432 1.19285 0.87450 0.81944 0.98510 1.48330 1.46335 1.34747 1.03431 1.19869 0.94019 0.90483 0.88970 1.23337 1.00772 0.82744 1.00754 1.21706 0.97145 0.98874 1.03796 1.21825 1.02795 0.93274 1.05333 1.23927 0.89940 0.97806 1.00269 1.83998 1.44440 1.18708 1.60153 1.20451 0.82218 0.83767 0.83923 1.90650 1.58094 1.61367 1.30744 1.21837 0.99330 0.97965 0.98578 1.21772 0.98666 0.94370 0.94452 1.22609 0.98102 0.97793 0.96927 1.22365 0.99974 0.95552 0.98446 1.22112 0.98909 0.97456 0.97555 1.22211 0.97260 0.97837 0.98519 0.92669 0.95017 0.93866 0.86763 0.89820 0.83274 0.83809 0.78593 0.89636 0.89327 0.90199 0.90182 0.92041 0.91875 0.92149 0.92218 0.92341 0.91875 0.92128 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.89 -26.40 13.29 55.43 0.74 -25.66 16 2 C 0.06 1.76 5.46 -17.82 -0.10 1.67 16 3 Si 0.90 21.66 29.54 -169.99 -5.02 16.64 16 4 H -0.28 -6.46 7.11 56.52 0.40 -6.06 16 5 H -0.29 -6.83 7.11 56.52 0.40 -6.43 16 6 H -0.28 -6.72 7.11 56.52 0.40 -6.32 16 7 C -0.53 -14.67 9.39 -34.44 -0.32 -15.00 16 8 H 0.06 1.59 7.81 -52.49 -0.41 1.18 16 9 C 0.25 6.39 5.16 -5.20 -0.03 6.37 16 10 N -0.60 -12.53 2.44 -176.44 -0.43 -12.96 16 11 C 0.19 3.13 5.74 -5.19 -0.03 3.10 16 12 C -0.02 -0.39 6.85 -35.62 -0.24 -0.64 16 13 C -0.20 -3.06 10.81 -39.70 -0.43 -3.49 16 14 C -0.21 -2.85 10.91 -39.70 -0.43 -3.28 16 15 C -0.05 -0.64 12.09 29.42 0.36 -0.28 16 16 O -0.18 -2.60 9.56 5.70 0.05 -2.54 16 17 C 0.51 10.58 7.49 -10.99 -0.08 10.50 16 18 O -0.53 -13.22 14.31 5.56 0.08 -13.14 16 19 C -0.14 -2.11 3.61 -27.89 -0.10 -2.21 16 20 C -0.07 -1.07 2.44 -88.77 -0.22 -1.29 16 21 C -0.12 -1.74 5.78 -24.55 -0.14 -1.89 16 22 C -0.13 -1.52 6.82 -25.07 -0.17 -1.69 16 23 C -0.12 -1.30 6.80 -25.62 -0.17 -1.48 16 24 C -0.12 -1.38 6.37 -25.62 -0.16 -1.54 16 25 H 0.26 7.39 8.31 -40.82 -0.34 7.05 16 26 H 0.03 0.83 8.07 -51.93 -0.42 0.41 16 27 H 0.04 1.28 7.42 -51.92 -0.39 0.90 16 28 H 0.11 1.82 8.07 -51.92 -0.42 1.41 16 29 H 0.08 1.13 6.44 -51.93 -0.33 0.80 16 30 H 0.15 2.33 8.06 -52.48 -0.42 1.91 16 31 H 0.14 1.58 8.06 -52.49 -0.42 1.15 16 32 H 0.20 1.60 8.06 -52.49 -0.42 1.18 16 33 H 0.09 1.17 7.29 -51.92 -0.38 0.79 16 34 H 0.09 1.28 6.93 -51.93 -0.36 0.92 16 35 H 0.08 1.30 7.90 -51.93 -0.41 0.89 16 36 H 0.08 1.43 7.30 -51.93 -0.38 1.05 16 37 H 0.06 0.89 7.98 -51.93 -0.41 0.48 16 38 H 0.06 0.76 8.14 -51.93 -0.42 0.34 16 39 H 0.06 0.67 8.14 -51.93 -0.42 0.24 16 40 H 0.06 0.58 8.14 -51.93 -0.42 0.16 16 41 H 0.06 0.56 8.14 -51.93 -0.42 0.14 16 42 H 0.06 0.67 7.84 -51.93 -0.41 0.26 16 43 H 0.06 0.65 8.14 -51.93 -0.42 0.22 16 LS Contribution 352.42 15.07 5.31 5.31 Total: -1.00 -32.48 352.42 -8.38 -40.87 By element: Atomic # 1 Polarization: 9.49 SS G_CDS: -6.83 Total: 2.65 kcal Atomic # 6 Polarization: -8.88 SS G_CDS: -2.28 Total: -11.16 kcal Atomic # 7 Polarization: -38.93 SS G_CDS: 0.31 Total: -38.63 kcal Atomic # 8 Polarization: -15.82 SS G_CDS: 0.13 Total: -15.68 kcal Atomic # 14 Polarization: 21.66 SS G_CDS: -5.02 Total: 16.64 kcal Total LS contribution 5.31 Total: 5.31 kcal Total: -32.48 -8.38 -40.87 kcal The number of atoms in the molecule is 43 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000060625911.mol2 43 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 0.650 kcal (2) G-P(sol) polarization free energy of solvation -32.485 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -31.835 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.383 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -40.867 kcal (6) G-S(sol) free energy of system = (1) + (5) -40.217 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.49 seconds