Wall clock time and date at job start Tue Mar 31 2020 08:57:37 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31520 * 1 3 3 Si 1.86797 * 119.99517 * 2 1 4 4 H 1.48507 * 109.47299 * 239.99558 * 3 2 1 5 5 H 1.48504 * 109.47431 * 359.97438 * 3 2 1 6 6 H 1.48499 * 109.47323 * 119.99800 * 3 2 1 7 7 C 1.37873 * 120.00412 * 179.97438 * 2 1 3 8 8 H 1.08001 * 120.00120 * 180.02562 * 7 2 1 9 9 C 1.50694 * 119.99982 * 0.02562 * 7 2 1 10 10 N 1.46497 * 109.47287 * 180.02562 * 9 7 2 11 11 C 1.46500 * 120.00098 * 269.99749 * 10 9 7 12 12 C 1.50703 * 109.47340 * 270.00179 * 11 10 9 13 13 C 1.34512 * 125.78738 * 90.00052 * 12 11 10 14 14 C 1.41387 * 106.84082 * 180.02562 * 13 12 11 15 15 C 1.34520 * 106.83740 * 359.97438 * 14 13 12 16 16 O 1.34301 * 125.78740 * 269.68905 * 12 11 10 17 17 C 1.34777 * 120.00473 * 90.00172 * 10 9 7 18 18 O 1.21280 * 119.99624 * 359.97438 * 17 10 9 19 19 C 1.50692 * 120.00322 * 180.02562 * 17 10 9 20 20 C 1.53002 * 109.47423 * 179.97438 * 19 17 10 21 21 C 1.55238 * 110.58012 * 289.87626 * 20 19 17 22 22 C 1.54894 * 102.58338 * 203.33342 * 21 20 19 23 23 C 1.54266 * 104.31305 * 37.93170 * 22 21 20 24 24 C 1.53869 * 106.60031 * 336.32486 * 23 22 21 25 25 H 0.97000 * 120.00124 * 0.02562 * 1 2 3 26 26 H 1.08998 * 109.47303 * 59.99754 * 9 7 2 27 27 H 1.09007 * 109.47144 * 300.00011 * 9 7 2 28 28 H 1.09010 * 109.46801 * 30.00118 * 11 10 9 29 29 H 1.08995 * 109.47284 * 149.99464 * 11 10 9 30 30 H 1.08003 * 126.58719 * 0.02689 * 13 12 11 31 31 H 1.07997 * 126.58465 * 179.97438 * 14 13 12 32 32 H 1.07995 * 125.78881 * 179.97438 * 15 14 13 33 33 H 1.09008 * 109.47319 * 59.99595 * 19 17 10 34 34 H 1.09000 * 109.47571 * 299.99862 * 19 17 10 35 35 H 1.09006 * 110.43291 * 52.45876 * 20 19 17 36 36 H 1.08996 * 110.89448 * 85.04906 * 21 20 19 37 37 H 1.08993 * 110.76342 * 321.56571 * 21 20 19 38 38 H 1.09002 * 110.48891 * 279.18596 * 22 21 20 39 39 H 1.08998 * 110.48494 * 156.67683 * 22 21 20 40 40 H 1.09001 * 110.03084 * 95.60669 * 23 22 21 41 41 H 1.08996 * 110.03108 * 216.98559 * 23 22 21 42 42 H 1.08999 * 110.04012 * 119.28327 * 24 23 22 43 43 H 1.09006 * 110.02998 * 240.67078 * 24 23 22 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3152 0.0000 0.0000 3 14 2.2491 1.6178 0.0000 4 1 3.1029 1.6965 -1.2125 5 1 1.2840 2.7465 -0.0006 6 1 3.1028 1.6966 1.2125 7 6 2.0047 -1.1940 0.0005 8 1 3.0847 -1.1939 0.0010 9 6 1.2513 -2.4991 0.0005 10 7 2.2033 -3.6125 0.0018 11 6 2.6803 -4.1699 -1.2663 12 6 1.7639 -5.2843 -1.7016 13 6 0.6720 -5.1480 -2.4752 14 6 0.1167 -6.4389 -2.6310 15 6 0.9029 -7.2869 -1.9438 16 8 1.9024 -6.5828 -1.3877 17 6 2.6404 -4.1243 1.1695 18 8 2.2458 -3.6626 2.2193 19 6 3.6201 -5.2692 1.1707 20 6 3.9508 -5.6560 2.6136 21 6 4.8043 -4.5513 3.2927 22 6 5.5237 -5.3280 4.4234 23 6 5.8546 -6.6973 3.7947 24 6 4.8546 -6.9059 2.6440 25 1 -0.4850 0.8400 -0.0004 26 1 0.6249 -2.5571 -0.8896 27 1 0.6242 -2.5567 0.8903 28 1 2.6886 -3.3885 -2.0264 29 1 3.6896 -4.5597 -1.1351 30 1 0.2922 -4.2290 -2.8965 31 1 -0.7688 -6.6951 -3.1938 32 1 0.7574 -8.3535 -1.8571 33 1 4.5331 -4.9669 0.6576 34 1 3.1807 -6.1241 0.6567 35 1 3.0361 -5.8328 3.1794 36 1 4.1688 -3.7681 3.7060 37 1 5.5261 -4.1343 2.5906 38 1 4.8630 -5.4518 5.2814 39 1 6.4379 -4.8127 4.7182 40 1 6.8736 -6.6941 3.4077 41 1 5.7401 -7.4867 4.5376 42 1 5.3881 -7.0039 1.6986 43 1 4.2544 -7.7970 2.8279 RHF calculation, no. of doubly occupied orbitals= 55 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000060625911.mol2 43 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 08:57:37 Heat of formation + Delta-G solvation = -58.519363 kcal Electronic energy + Delta-G solvation = -23804.852681 eV Core-core repulsion = 20429.159131 eV Total energy + Delta-G solvation = -3375.693551 eV No. of doubly occupied orbitals = 55 Molecular weight (most abundant/longest-lived isotopes) = 291.162 amu Computer time = 0.57 seconds Orbital eigenvalues (eV) -43.43081 -40.89186 -38.73492 -36.82493 -34.88398 -33.85222 -32.56475 -31.48033 -29.51455 -29.41343 -26.99345 -26.59500 -24.41296 -22.61012 -21.69759 -21.41937 -20.71090 -19.95072 -18.81342 -18.21047 -17.82085 -17.35200 -16.77174 -16.53838 -16.20702 -16.05226 -15.50801 -15.22798 -14.66188 -14.41559 -14.15551 -13.93601 -13.85753 -13.73097 -13.54784 -13.31760 -13.03867 -12.90449 -12.64535 -12.56112 -12.21497 -12.13491 -11.90820 -11.83964 -11.73850 -11.60984 -11.44392 -11.17668 -10.81801 -10.63826 -10.53269 -9.64929 -9.36469 -8.22150 -6.36775 0.77035 1.37040 1.41294 1.48414 1.69542 1.80050 2.15587 2.35711 2.50241 3.08006 3.59897 3.73515 3.81199 3.85448 3.98597 4.09944 4.17404 4.35286 4.38150 4.45717 4.56244 4.63014 4.65588 4.75751 4.85595 4.90432 4.94008 4.96951 5.02329 5.06063 5.13941 5.17078 5.23427 5.23949 5.29534 5.39372 5.52728 5.56445 5.58024 5.63318 5.80808 6.05679 6.23763 6.67104 6.74759 7.28588 7.46969 8.85288 Molecular weight = 291.16amu Principal moments of inertia in cm(-1) A = 0.009715 B = 0.006378 C = 0.004081 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2881.527484 B = 4389.368291 C = 6859.820523 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.929 5.929 2 C 0.008 3.992 3 Si 0.967 3.033 4 H -0.258 1.258 5 H -0.280 1.280 6 H -0.278 1.278 7 C -0.541 4.541 8 H 0.058 0.942 9 C 0.266 3.734 10 N -0.602 5.602 11 C 0.190 3.810 12 C -0.044 4.044 13 C -0.213 4.213 14 C -0.231 4.231 15 C -0.033 4.033 16 O -0.180 6.180 17 C 0.498 3.502 18 O -0.585 6.585 19 C -0.121 4.121 20 C -0.076 4.076 21 C -0.121 4.121 22 C -0.123 4.123 23 C -0.118 4.118 24 C -0.112 4.112 25 H 0.266 0.734 26 H 0.021 0.979 27 H -0.008 1.008 28 H 0.112 0.888 29 H 0.119 0.881 30 H 0.138 0.862 31 H 0.166 0.834 32 H 0.244 0.756 33 H 0.112 0.888 34 H 0.106 0.894 35 H 0.052 0.948 36 H 0.036 0.964 37 H 0.065 0.935 38 H 0.056 0.944 39 H 0.072 0.928 40 H 0.076 0.924 41 H 0.072 0.928 42 H 0.081 0.919 43 H 0.071 0.929 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 10.059 -17.582 -2.811 20.450 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.569 5.569 2 C -0.191 4.191 3 Si 0.791 3.209 4 H -0.182 1.182 5 H -0.205 1.205 6 H -0.204 1.204 7 C -0.579 4.579 8 H 0.076 0.924 9 C 0.145 3.855 10 N -0.332 5.332 11 C 0.068 3.932 12 C -0.095 4.095 13 C -0.234 4.234 14 C -0.250 4.250 15 C -0.101 4.101 16 O -0.076 6.076 17 C 0.288 3.712 18 O -0.466 6.466 19 C -0.160 4.160 20 C -0.095 4.095 21 C -0.159 4.159 22 C -0.161 4.161 23 C -0.155 4.155 24 C -0.150 4.150 25 H 0.075 0.925 26 H 0.039 0.961 27 H 0.010 0.990 28 H 0.130 0.870 29 H 0.137 0.863 30 H 0.155 0.845 31 H 0.184 0.816 32 H 0.260 0.740 33 H 0.130 0.870 34 H 0.124 0.876 35 H 0.071 0.929 36 H 0.055 0.945 37 H 0.084 0.916 38 H 0.075 0.925 39 H 0.090 0.910 40 H 0.095 0.905 41 H 0.091 0.909 42 H 0.100 0.900 43 H 0.090 0.910 Dipole moment (debyes) X Y Z Total from point charges 9.935 -17.325 -2.095 20.081 hybrid contribution -0.791 1.494 -0.086 1.692 sum 9.144 -15.831 -2.181 18.412 Atomic orbital electron populations 1.70061 1.07654 1.28162 1.51009 1.25855 0.95735 1.03033 0.94429 0.85484 0.78301 0.78072 0.79055 1.18205 1.20544 1.20389 1.21668 0.93397 0.91651 1.51210 0.92417 1.18683 0.87822 0.83635 0.95390 1.48309 1.45434 1.33784 1.05703 1.20032 0.95762 0.90826 0.86623 1.23030 1.01150 0.83390 1.01899 1.21903 0.97581 0.99816 1.04052 1.22133 1.04069 0.92292 1.06471 1.24843 0.88036 0.99396 0.97796 1.83981 1.45261 1.18039 1.60348 1.21521 0.82339 0.84504 0.82852 1.90625 1.60034 1.63272 1.32634 1.21830 0.98548 0.95820 0.99817 1.21776 0.98299 0.96084 0.93347 1.22578 0.97871 0.97275 0.98185 1.22351 0.99948 0.96489 0.97279 1.22108 0.99516 0.96397 0.97490 1.22175 0.96884 0.96030 0.99895 0.92480 0.96116 0.98998 0.86980 0.86329 0.84450 0.81649 0.73998 0.86962 0.87571 0.92905 0.94477 0.91591 0.92481 0.90969 0.90489 0.90922 0.90009 0.91033 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.93 -56.82 13.29 21.45 0.28 -56.54 16 2 C 0.01 0.49 5.46 84.65 0.46 0.95 16 3 Si 0.97 45.02 29.54 68.60 2.03 47.05 16 4 H -0.26 -11.16 7.11 99.48 0.71 -10.45 16 5 H -0.28 -12.68 7.11 99.48 0.71 -11.98 16 6 H -0.28 -12.98 7.11 99.48 0.71 -12.28 16 7 C -0.54 -31.17 9.39 25.60 0.24 -30.93 16 8 H 0.06 3.25 7.81 -2.91 -0.02 3.22 16 9 C 0.27 14.59 5.16 85.63 0.44 15.03 16 10 N -0.60 -26.07 2.44 -830.51 -2.03 -28.10 16 11 C 0.19 6.16 5.74 85.63 0.49 6.65 16 12 C -0.04 -1.35 6.85 24.83 0.17 -1.18 16 13 C -0.21 -6.71 10.81 22.19 0.24 -6.47 16 14 C -0.23 -5.77 10.91 22.19 0.24 -5.53 16 15 C -0.03 -0.72 12.09 66.97 0.81 0.09 16 16 O -0.18 -4.84 9.56 -2.51 -0.02 -4.86 16 17 C 0.50 21.31 7.49 87.65 0.66 21.97 16 18 O -0.59 -31.01 14.31 -3.03 -0.04 -31.05 16 19 C -0.12 -3.56 3.61 29.85 0.11 -3.45 16 20 C -0.08 -2.16 2.44 -9.60 -0.02 -2.18 16 21 C -0.12 -3.65 5.78 32.01 0.18 -3.46 16 22 C -0.12 -2.82 6.82 31.67 0.22 -2.60 16 23 C -0.12 -2.10 6.80 31.32 0.21 -1.89 16 24 C -0.11 -2.20 6.37 31.32 0.20 -2.00 16 25 H 0.27 15.33 8.31 -92.71 -0.77 14.55 16 26 H 0.02 1.16 8.07 -2.39 -0.02 1.14 16 27 H -0.01 -0.52 7.42 -2.38 -0.02 -0.54 16 28 H 0.11 3.62 8.07 -2.38 -0.02 3.60 16 29 H 0.12 2.95 6.44 -2.39 -0.02 2.93 16 30 H 0.14 4.52 8.06 -2.91 -0.02 4.49 16 31 H 0.17 3.28 8.06 -2.91 -0.02 3.25 16 32 H 0.24 2.71 8.06 -2.91 -0.02 2.69 16 33 H 0.11 2.73 7.29 -2.38 -0.02 2.71 16 34 H 0.11 2.79 6.93 -2.39 -0.02 2.78 16 35 H 0.05 1.77 7.90 -2.38 -0.02 1.75 16 36 H 0.04 1.41 7.30 -2.39 -0.02 1.39 16 37 H 0.07 1.87 7.98 -2.39 -0.02 1.85 16 38 H 0.06 1.35 8.14 -2.39 -0.02 1.33 16 39 H 0.07 1.47 8.14 -2.39 -0.02 1.45 16 40 H 0.08 1.15 8.14 -2.39 -0.02 1.13 16 41 H 0.07 1.13 8.14 -2.39 -0.02 1.11 16 42 H 0.08 1.33 7.84 -2.39 -0.02 1.31 16 43 H 0.07 1.27 8.14 -2.38 -0.02 1.25 16 Total: -1.00 -75.63 352.42 5.85 -69.78 By element: Atomic # 1 Polarization: 17.74 SS G_CDS: 0.98 Total: 18.72 kcal Atomic # 6 Polarization: -19.65 SS G_CDS: 4.65 Total: -15.00 kcal Atomic # 7 Polarization: -82.89 SS G_CDS: -1.74 Total: -84.63 kcal Atomic # 8 Polarization: -35.85 SS G_CDS: -0.07 Total: -35.92 kcal Atomic # 14 Polarization: 45.02 SS G_CDS: 2.03 Total: 47.05 kcal Total: -75.63 5.85 -69.78 kcal The number of atoms in the molecule is 43 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000060625911.mol2 43 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 11.259 kcal (2) G-P(sol) polarization free energy of solvation -75.629 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -64.369 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 5.850 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -69.779 kcal (6) G-S(sol) free energy of system = (1) + (5) -58.519 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.57 seconds