Wall clock time and date at job start Tue Mar 31 2020 06:31:32 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52995 * 1 3 3 H 1.08997 * 109.59929 * 2 1 4 4 C 1.53380 * 109.59801 * 239.68197 * 2 1 3 5 5 C 1.53042 * 107.93944 * 171.92335 * 4 2 1 6 6 C 1.50805 * 109.65156 * 47.39217 * 5 4 2 7 7 C 1.38620 * 118.12599 * 164.30710 * 6 5 4 8 8 C 1.38044 * 120.48468 * 179.37309 * 7 6 5 9 9 C 1.38312 * 119.88802 * 359.97438 * 8 7 6 10 10 C 1.37805 * 119.95670 * 0.14182 * 9 8 7 11 11 C 1.38365 * 122.00763 * 343.96517 * 6 5 4 12 12 N 1.39401 * 122.94550 * 1.28147 * 11 6 5 13 13 C 1.46901 * 110.99844 * 213.93852 * 12 11 6 14 14 C 1.53004 * 109.47199 * 64.10585 * 13 12 11 15 15 C 1.52998 * 109.46828 * 179.97438 * 14 13 12 16 16 S 1.81001 * 109.46857 * 179.97438 * 15 14 13 17 17 C 1.76199 * 100.00186 * 179.97438 * 16 15 14 18 18 H 1.07999 * 119.99731 * 0.02562 * 17 16 15 19 19 C 1.38795 * 120.00053 * 179.97438 * 17 16 15 20 20 N 1.31629 * 120.00124 * 0.02562 * 19 17 16 21 21 Si 1.86799 * 119.99875 * 180.02562 * 19 17 16 22 22 H 1.48500 * 109.47231 * 60.00642 * 21 19 17 23 23 H 1.48500 * 109.47027 * 180.02562 * 21 19 17 24 24 H 1.48491 * 109.47391 * 300.00231 * 21 19 17 25 25 H 1.09005 * 109.47583 * 180.31614 * 1 2 3 26 26 H 1.09000 * 109.47095 * 300.31777 * 1 2 3 27 27 H 1.08998 * 109.47538 * 60.31490 * 1 2 3 28 28 H 1.09002 * 109.76575 * 52.31792 * 4 2 1 29 29 H 1.08999 * 109.77300 * 291.53466 * 4 2 1 30 30 H 1.09002 * 109.44399 * 287.33937 * 5 4 2 31 31 H 1.08999 * 109.44272 * 167.44798 * 5 4 2 32 32 H 1.08001 * 119.75591 * 359.37687 * 7 6 5 33 33 H 1.08002 * 120.05754 * 179.97438 * 8 7 6 34 34 H 1.08004 * 120.02063 * 180.41526 * 9 8 7 35 35 H 1.08005 * 119.79493 * 180.02562 * 10 9 8 36 36 H 1.09003 * 109.46909 * 184.10431 * 13 12 11 37 37 H 1.08998 * 109.47445 * 304.09982 * 13 12 11 38 38 H 1.09003 * 109.46543 * 299.99803 * 14 13 12 39 39 H 1.08998 * 109.47414 * 59.99378 * 14 13 12 40 40 H 1.08993 * 109.47545 * 299.99430 * 15 14 13 41 41 H 1.09002 * 109.47217 * 60.00024 * 15 14 13 42 42 H 0.97004 * 119.99727 * 179.97438 * 20 19 17 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8956 1.0268 0.0000 4 6 2.0444 -0.7294 -1.2473 5 6 3.5606 -0.5329 -1.3165 6 6 4.1708 -0.8157 0.0332 7 6 5.5406 -1.0168 0.1019 8 6 6.1518 -1.2663 1.3143 9 6 5.3946 -1.3162 2.4706 10 6 4.0320 -1.1197 2.4098 11 6 3.4076 -0.8711 1.1860 12 7 2.0244 -0.6977 1.1886 13 6 1.5805 -0.0248 2.4167 14 6 2.1663 1.3879 2.4645 15 6 1.7034 2.0888 3.7433 16 16 2.3970 3.7597 3.8003 17 6 1.7217 4.3193 5.3285 18 1 1.0880 3.6663 5.9102 19 6 2.0052 5.5990 5.7852 20 7 2.7780 6.3947 5.0765 21 14 1.2899 6.1920 7.4057 22 1 1.7541 5.3079 8.5048 23 1 1.7394 7.5833 7.6656 24 1 -0.1929 6.1566 7.3348 25 1 -0.3634 -1.0277 0.0057 26 1 -0.3633 0.5188 0.8871 27 1 -0.3634 0.5089 -0.8928 28 1 1.5773 -0.3101 -2.1385 29 1 1.8134 -1.7921 -1.1746 30 1 3.7805 0.4948 -1.6059 31 1 3.9815 -1.2151 -2.0551 32 1 6.1340 -0.9778 -0.7996 33 1 7.2196 -1.4224 1.3598 34 1 5.8715 -1.5047 3.4211 35 1 3.4432 -1.1589 3.3144 36 1 0.4920 0.0327 2.4263 37 1 1.9221 -0.5894 3.2842 38 1 3.2547 1.3303 2.4549 39 1 1.8246 1.9525 1.5970 40 1 0.6150 2.1464 3.7525 41 1 2.0448 1.5243 4.6110 42 1 2.9757 7.2891 5.3956 RHF calculation, no. of doubly occupied orbitals= 52 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000072513387.mol2 42 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 06:31:32 Heat of formation + Delta-G solvation = 13.028559 kcal Electronic energy + Delta-G solvation = -20991.168692 eV Core-core repulsion = 18061.330563 eV Total energy + Delta-G solvation = -2929.838129 eV No. of doubly occupied orbitals = 52 Molecular weight (most abundant/longest-lived isotopes) = 291.135 amu Computer time = 0.60 seconds Orbital eigenvalues (eV) -40.84584 -37.36126 -35.15442 -32.45521 -32.13855 -31.74044 -29.67626 -27.62276 -26.16194 -25.43901 -23.55570 -22.56932 -21.95859 -20.80510 -19.08329 -17.48208 -17.18165 -16.40996 -15.52083 -15.00390 -14.81903 -14.77660 -14.14764 -13.99982 -13.98277 -13.57609 -13.35370 -13.19887 -12.71159 -12.54610 -12.30365 -12.07661 -11.80036 -11.63621 -11.53664 -11.30981 -11.20691 -11.04918 -10.85446 -10.77827 -10.68344 -10.40754 -10.26391 -9.87079 -9.42615 -9.05299 -8.63739 -8.31761 -7.52523 -6.53311 -6.22668 -3.93253 1.47739 1.52046 3.21507 3.22973 3.27618 3.54340 3.64148 3.98540 4.22349 4.55078 4.71212 4.76607 4.90819 5.08571 5.13136 5.17821 5.26363 5.28800 5.30681 5.35401 5.43906 5.52311 5.56477 5.61861 5.62901 5.70071 5.76675 5.80270 5.84059 5.91993 6.04698 6.10727 6.12289 6.17010 6.31882 6.34173 6.48658 6.55086 6.67424 6.70764 6.87454 7.13726 7.41679 7.59957 8.36205 9.23416 10.85459 Molecular weight = 291.14amu Principal moments of inertia in cm(-1) A = 0.020001 B = 0.003828 C = 0.003508 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1399.595037 B = 7312.732032 C = 7979.451637 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.147 4.147 2 C 0.077 3.923 3 H 0.062 0.938 4 C -0.116 4.116 5 C -0.077 4.077 6 C -0.130 4.130 7 C -0.095 4.095 8 C -0.154 4.154 9 C -0.095 4.095 10 C -0.157 4.157 11 C 0.138 3.862 12 N -0.487 5.487 13 C 0.052 3.948 14 C -0.131 4.131 15 C -0.108 4.108 16 S -0.133 6.133 17 C -0.517 4.517 18 H 0.072 0.928 19 C 0.072 3.928 20 N -0.870 5.870 21 Si 0.918 3.082 22 H -0.274 1.274 23 H -0.283 1.283 24 H -0.274 1.274 25 H 0.062 0.938 26 H 0.063 0.937 27 H 0.063 0.937 28 H 0.075 0.925 29 H 0.073 0.927 30 H 0.073 0.927 31 H 0.073 0.927 32 H 0.117 0.883 33 H 0.117 0.883 34 H 0.120 0.880 35 H 0.127 0.873 36 H 0.085 0.915 37 H 0.084 0.916 38 H 0.071 0.929 39 H 0.067 0.933 40 H 0.060 0.940 41 H 0.060 0.940 42 H 0.268 0.732 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 0.701 -16.251 -11.641 20.002 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.205 4.205 2 C -0.029 4.029 3 H 0.080 0.920 4 C -0.154 4.154 5 C -0.114 4.114 6 C -0.134 4.134 7 C -0.113 4.113 8 C -0.173 4.173 9 C -0.113 4.113 10 C -0.177 4.177 11 C 0.039 3.961 12 N -0.200 5.200 13 C -0.075 4.075 14 C -0.170 4.170 15 C -0.257 4.257 16 S 0.095 5.905 17 C -0.665 4.665 18 H 0.090 0.910 19 C -0.137 4.137 20 N -0.506 5.506 21 Si 0.744 3.256 22 H -0.199 1.199 23 H -0.208 1.208 24 H -0.199 1.199 25 H 0.081 0.919 26 H 0.082 0.918 27 H 0.082 0.918 28 H 0.093 0.907 29 H 0.092 0.908 30 H 0.091 0.909 31 H 0.092 0.908 32 H 0.135 0.865 33 H 0.135 0.865 34 H 0.138 0.862 35 H 0.144 0.856 36 H 0.104 0.896 37 H 0.102 0.898 38 H 0.089 0.911 39 H 0.085 0.915 40 H 0.078 0.922 41 H 0.079 0.921 42 H 0.077 0.923 Dipole moment (debyes) X Y Z Total from point charges 1.144 -15.953 -12.407 20.242 hybrid contribution -0.831 0.481 2.020 2.237 sum 0.313 -15.472 -10.386 18.638 Atomic orbital electron populations 1.21887 0.93647 1.02516 1.02420 1.21722 0.95854 0.96519 0.88842 0.92001 1.21756 0.95124 1.01466 0.97008 1.20506 0.95168 1.01889 0.93872 1.19466 0.93558 1.06072 0.94269 1.20884 0.93492 0.99156 0.97788 1.20924 0.99573 1.04084 0.92740 1.20927 0.93604 0.98524 0.98268 1.21189 0.95153 1.04755 0.96621 1.18541 0.87391 0.96949 0.93200 1.58410 1.08736 1.48608 1.04200 1.22532 1.01003 0.93232 0.90744 1.21907 1.01700 0.95116 0.98299 1.23157 1.02410 1.01622 0.98538 1.84667 1.66857 1.07353 1.31610 1.22646 1.35511 1.02114 1.06245 0.91027 1.25005 0.94988 0.95667 0.98051 1.70017 1.34704 1.08064 1.37772 0.86233 0.79344 0.77803 0.82213 1.19919 1.20807 1.19936 0.91877 0.91842 0.91781 0.90681 0.90835 0.90855 0.90817 0.86471 0.86487 0.86185 0.85564 0.89646 0.89780 0.91080 0.91461 0.92163 0.92122 0.92264 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -1.50 8.99 37.16 0.33 -1.16 16 2 C 0.08 0.90 2.04 -67.78 -0.14 0.76 16 3 H 0.06 0.82 6.29 -51.93 -0.33 0.50 16 4 C -0.12 -1.15 5.48 -26.51 -0.15 -1.30 16 5 C -0.08 -0.80 5.81 -27.81 -0.16 -0.96 16 6 C -0.13 -1.67 5.74 -104.38 -0.60 -2.27 16 7 C -0.09 -1.13 9.63 -39.51 -0.38 -1.51 16 8 C -0.15 -1.84 10.05 -39.63 -0.40 -2.24 16 9 C -0.09 -1.20 10.03 -39.71 -0.40 -1.60 16 10 C -0.16 -2.15 8.14 -39.23 -0.32 -2.47 16 11 C 0.14 1.91 4.91 -83.86 -0.41 1.50 16 12 N -0.49 -6.34 4.51 -163.74 -0.74 -7.08 16 13 C 0.05 0.70 4.60 -3.82 -0.02 0.68 16 14 C -0.13 -2.17 4.60 -26.73 -0.12 -2.30 16 15 C -0.11 -2.18 5.67 37.16 0.21 -1.97 16 16 S -0.13 -3.52 21.44 -107.50 -2.30 -5.82 16 17 C -0.52 -14.91 9.50 30.94 0.29 -14.61 16 18 H 0.07 1.99 7.80 -52.49 -0.41 1.58 16 19 C 0.07 2.05 5.49 -17.43 -0.10 1.96 16 20 N -0.87 -26.18 13.22 55.49 0.73 -25.44 16 21 Si 0.92 21.61 29.55 -169.99 -5.02 16.58 16 22 H -0.27 -6.31 7.11 56.52 0.40 -5.91 16 23 H -0.28 -6.51 7.11 56.52 0.40 -6.11 16 24 H -0.27 -6.30 7.11 56.52 0.40 -5.90 16 25 H 0.06 0.61 8.14 -51.93 -0.42 0.19 16 26 H 0.06 0.69 6.42 -51.93 -0.33 0.36 16 27 H 0.06 0.56 8.14 -51.93 -0.42 0.14 16 28 H 0.07 0.61 8.14 -51.93 -0.42 0.19 16 29 H 0.07 0.75 8.14 -51.93 -0.42 0.33 16 30 H 0.07 0.75 8.14 -51.93 -0.42 0.33 16 31 H 0.07 0.65 8.14 -51.93 -0.42 0.22 16 32 H 0.12 1.13 8.06 -52.49 -0.42 0.71 16 33 H 0.12 1.14 8.06 -52.49 -0.42 0.72 16 34 H 0.12 1.30 8.06 -52.48 -0.42 0.88 16 35 H 0.13 1.66 5.80 -52.48 -0.30 1.36 16 36 H 0.09 1.08 6.22 -51.93 -0.32 0.76 16 37 H 0.08 1.10 5.84 -51.93 -0.30 0.80 16 38 H 0.07 1.29 6.68 -51.93 -0.35 0.94 16 39 H 0.07 1.15 6.44 -51.93 -0.33 0.81 16 40 H 0.06 1.19 8.14 -51.92 -0.42 0.77 16 41 H 0.06 1.21 8.14 -51.91 -0.42 0.79 16 42 H 0.27 7.51 8.31 -40.82 -0.34 7.17 16 LS Contribution 339.86 15.07 5.12 5.12 Total: -1.00 -31.48 339.86 -11.03 -42.51 By element: Atomic # 1 Polarization: 8.08 SS G_CDS: -6.47 Total: 1.61 kcal Atomic # 6 Polarization: -25.14 SS G_CDS: -2.35 Total: -27.49 kcal Atomic # 7 Polarization: -32.52 SS G_CDS: 0.00 Total: -32.52 kcal Atomic # 14 Polarization: 21.61 SS G_CDS: -5.02 Total: 16.58 kcal Atomic # 16 Polarization: -3.52 SS G_CDS: -2.30 Total: -5.82 kcal Total LS contribution 5.12 Total: 5.12 kcal Total: -31.48 -11.03 -42.51 kcal The number of atoms in the molecule is 42 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000072513387.mol2 42 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 55.539 kcal (2) G-P(sol) polarization free energy of solvation -31.482 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 24.057 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -11.029 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -42.510 kcal (6) G-S(sol) free energy of system = (1) + (5) 13.029 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.60 seconds