Wall clock time and date at job start Tue Mar 31 2020 06:31:31 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52995 * 1 3 3 H 1.08997 * 109.59929 * 2 1 4 4 C 1.53380 * 109.59801 * 239.68197 * 2 1 3 5 5 C 1.53042 * 107.93944 * 171.92335 * 4 2 1 6 6 C 1.50805 * 109.65156 * 47.39217 * 5 4 2 7 7 C 1.38620 * 118.12599 * 164.30710 * 6 5 4 8 8 C 1.38044 * 120.48468 * 179.37309 * 7 6 5 9 9 C 1.38312 * 119.88802 * 359.97438 * 8 7 6 10 10 C 1.37805 * 119.95670 * 0.14182 * 9 8 7 11 11 C 1.38365 * 122.00763 * 343.96517 * 6 5 4 12 12 N 1.39401 * 122.94550 * 1.28147 * 11 6 5 13 13 C 1.46901 * 110.99844 * 213.93852 * 12 11 6 14 14 C 1.53004 * 109.47199 * 64.10585 * 13 12 11 15 15 C 1.52998 * 109.46828 * 179.97438 * 14 13 12 16 16 S 1.81001 * 109.46857 * 179.97438 * 15 14 13 17 17 C 1.76199 * 100.00186 * 179.97438 * 16 15 14 18 18 H 1.07999 * 119.99731 * 0.02562 * 17 16 15 19 19 C 1.38795 * 120.00053 * 179.97438 * 17 16 15 20 20 N 1.31629 * 120.00124 * 0.02562 * 19 17 16 21 21 Si 1.86799 * 119.99875 * 180.02562 * 19 17 16 22 22 H 1.48500 * 109.47231 * 60.00642 * 21 19 17 23 23 H 1.48500 * 109.47027 * 180.02562 * 21 19 17 24 24 H 1.48491 * 109.47391 * 300.00231 * 21 19 17 25 25 H 1.09005 * 109.47583 * 180.31614 * 1 2 3 26 26 H 1.09000 * 109.47095 * 300.31777 * 1 2 3 27 27 H 1.08998 * 109.47538 * 60.31490 * 1 2 3 28 28 H 1.09002 * 109.76575 * 52.31792 * 4 2 1 29 29 H 1.08999 * 109.77300 * 291.53466 * 4 2 1 30 30 H 1.09002 * 109.44399 * 287.33937 * 5 4 2 31 31 H 1.08999 * 109.44272 * 167.44798 * 5 4 2 32 32 H 1.08001 * 119.75591 * 359.37687 * 7 6 5 33 33 H 1.08002 * 120.05754 * 179.97438 * 8 7 6 34 34 H 1.08004 * 120.02063 * 180.41526 * 9 8 7 35 35 H 1.08005 * 119.79493 * 180.02562 * 10 9 8 36 36 H 1.09003 * 109.46909 * 184.10431 * 13 12 11 37 37 H 1.08998 * 109.47445 * 304.09982 * 13 12 11 38 38 H 1.09003 * 109.46543 * 299.99803 * 14 13 12 39 39 H 1.08998 * 109.47414 * 59.99378 * 14 13 12 40 40 H 1.08993 * 109.47545 * 299.99430 * 15 14 13 41 41 H 1.09002 * 109.47217 * 60.00024 * 15 14 13 42 42 H 0.97004 * 119.99727 * 179.97438 * 20 19 17 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8956 1.0268 0.0000 4 6 2.0444 -0.7294 -1.2473 5 6 3.5606 -0.5329 -1.3165 6 6 4.1708 -0.8157 0.0332 7 6 5.5406 -1.0168 0.1019 8 6 6.1518 -1.2663 1.3143 9 6 5.3946 -1.3162 2.4706 10 6 4.0320 -1.1197 2.4098 11 6 3.4076 -0.8711 1.1860 12 7 2.0244 -0.6977 1.1886 13 6 1.5805 -0.0248 2.4167 14 6 2.1663 1.3879 2.4645 15 6 1.7034 2.0888 3.7433 16 16 2.3970 3.7597 3.8003 17 6 1.7217 4.3193 5.3285 18 1 1.0880 3.6663 5.9102 19 6 2.0052 5.5990 5.7852 20 7 2.7780 6.3947 5.0765 21 14 1.2899 6.1920 7.4057 22 1 1.7541 5.3079 8.5048 23 1 1.7394 7.5833 7.6656 24 1 -0.1929 6.1566 7.3348 25 1 -0.3634 -1.0277 0.0057 26 1 -0.3633 0.5188 0.8871 27 1 -0.3634 0.5089 -0.8928 28 1 1.5773 -0.3101 -2.1385 29 1 1.8134 -1.7921 -1.1746 30 1 3.7805 0.4948 -1.6059 31 1 3.9815 -1.2151 -2.0551 32 1 6.1340 -0.9778 -0.7996 33 1 7.2196 -1.4224 1.3598 34 1 5.8715 -1.5047 3.4211 35 1 3.4432 -1.1589 3.3144 36 1 0.4920 0.0327 2.4263 37 1 1.9221 -0.5894 3.2842 38 1 3.2547 1.3303 2.4549 39 1 1.8246 1.9525 1.5970 40 1 0.6150 2.1464 3.7525 41 1 2.0448 1.5243 4.6110 42 1 2.9757 7.2891 5.3956 RHF calculation, no. of doubly occupied orbitals= 52 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000072513387.mol2 42 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 06:31:31 Heat of formation + Delta-G solvation = -3.466444 kcal Electronic energy + Delta-G solvation = -20991.883969 eV Core-core repulsion = 18061.330563 eV Total energy + Delta-G solvation = -2930.553406 eV No. of doubly occupied orbitals = 52 Molecular weight (most abundant/longest-lived isotopes) = 291.135 amu Computer time = 0.53 seconds Orbital eigenvalues (eV) -41.81267 -38.33138 -36.17025 -34.62365 -33.44282 -32.63236 -30.63225 -28.56414 -27.90006 -27.05341 -24.50379 -23.78280 -22.93445 -21.89206 -20.07022 -19.54363 -18.17175 -17.40078 -16.90874 -16.61269 -16.29819 -15.97093 -15.51520 -15.22492 -14.97854 -14.83923 -14.37203 -14.26401 -14.04953 -13.54788 -13.50654 -13.32523 -13.03915 -12.95339 -12.79791 -12.73464 -12.60494 -12.47009 -12.26461 -12.07069 -11.87224 -11.56611 -11.32855 -11.27652 -11.14761 -10.66708 -10.33924 -9.59114 -8.69483 -8.54830 -8.38256 -6.15623 0.51280 0.53969 1.30172 1.39897 1.46664 1.72536 2.26995 2.63588 2.95848 3.01767 3.29239 3.67242 3.75345 3.86730 3.98228 4.04199 4.09744 4.23679 4.29205 4.34984 4.39302 4.44352 4.51223 4.53088 4.66713 4.71823 4.78282 4.83170 4.86340 4.93817 5.01646 5.04147 5.11140 5.17142 5.23961 5.26977 5.35239 5.37851 5.42781 5.59794 5.71386 5.92277 6.14911 6.16505 6.43250 7.03475 8.70773 Molecular weight = 291.14amu Principal moments of inertia in cm(-1) A = 0.020001 B = 0.003828 C = 0.003508 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1399.595037 B = 7312.732032 C = 7979.451637 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.143 4.143 2 C 0.072 3.928 3 H 0.041 0.959 4 C -0.110 4.110 5 C -0.078 4.078 6 C -0.143 4.143 7 C -0.102 4.102 8 C -0.159 4.159 9 C -0.109 4.109 10 C -0.176 4.176 11 C 0.116 3.884 12 N -0.484 5.484 13 C 0.061 3.939 14 C -0.112 4.112 15 C -0.082 4.082 16 S -0.202 6.202 17 C -0.538 4.538 18 H 0.074 0.926 19 C 0.016 3.984 20 N -0.908 5.908 21 Si 0.994 3.006 22 H -0.264 1.264 23 H -0.275 1.275 24 H -0.263 1.263 25 H 0.069 0.931 26 H 0.053 0.947 27 H 0.079 0.921 28 H 0.096 0.904 29 H 0.073 0.927 30 H 0.073 0.927 31 H 0.093 0.907 32 H 0.141 0.859 33 H 0.139 0.861 34 H 0.133 0.867 35 H 0.125 0.875 36 H 0.098 0.902 37 H 0.088 0.912 38 H 0.054 0.946 39 H 0.061 0.939 40 H 0.067 0.933 41 H 0.063 0.937 42 H 0.271 0.729 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 0.083 -17.286 -11.924 21.000 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.200 4.200 2 C -0.035 4.035 3 H 0.059 0.941 4 C -0.148 4.148 5 C -0.115 4.115 6 C -0.147 4.147 7 C -0.120 4.120 8 C -0.178 4.178 9 C -0.127 4.127 10 C -0.196 4.196 11 C 0.018 3.982 12 N -0.196 5.196 13 C -0.066 4.066 14 C -0.152 4.152 15 C -0.231 4.231 16 S 0.027 5.973 17 C -0.686 4.686 18 H 0.092 0.908 19 C -0.189 4.189 20 N -0.545 5.545 21 Si 0.815 3.185 22 H -0.189 1.189 23 H -0.200 1.200 24 H -0.188 1.188 25 H 0.089 0.911 26 H 0.072 0.928 27 H 0.097 0.903 28 H 0.115 0.885 29 H 0.092 0.908 30 H 0.091 0.909 31 H 0.112 0.888 32 H 0.159 0.841 33 H 0.157 0.843 34 H 0.151 0.849 35 H 0.142 0.858 36 H 0.116 0.884 37 H 0.106 0.894 38 H 0.072 0.928 39 H 0.080 0.920 40 H 0.085 0.915 41 H 0.081 0.919 42 H 0.080 0.920 Dipole moment (debyes) X Y Z Total from point charges 0.531 -17.005 -12.704 21.233 hybrid contribution -0.576 0.737 2.039 2.243 sum -0.044 -16.268 -10.665 19.452 Atomic orbital electron populations 1.21867 0.92417 1.03032 1.02718 1.21838 0.96852 0.95531 0.89249 0.94062 1.21752 0.94887 1.01279 0.96848 1.20575 0.95502 1.02342 0.93037 1.19863 0.94139 1.05567 0.95082 1.21243 0.93533 0.98462 0.98778 1.21265 1.00742 1.03287 0.92543 1.21200 0.93508 0.98622 0.99381 1.21340 0.95844 1.05612 0.96798 1.18770 0.87891 0.97845 0.93738 1.58510 1.08630 1.48297 1.04198 1.22419 1.01469 0.90995 0.91728 1.21744 1.00651 0.96746 0.96084 1.23075 1.02265 0.97336 1.00472 1.84708 1.68291 1.12610 1.31701 1.23004 1.35865 1.02841 1.06913 0.90822 1.26068 0.95099 0.95621 1.02071 1.70157 1.35967 1.08527 1.39829 0.85072 0.78852 0.77468 0.77080 1.18908 1.19969 1.18799 0.91149 0.92839 0.90256 0.88532 0.90840 0.90878 0.88841 0.84135 0.84337 0.84906 0.85769 0.88369 0.89351 0.92771 0.92026 0.91457 0.91867 0.91971 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -2.67 8.99 71.98 0.65 -2.03 16 2 C 0.07 1.60 2.04 45.13 0.09 1.69 16 3 H 0.04 1.09 6.29 -2.39 -0.02 1.08 16 4 C -0.11 -1.97 5.48 30.74 0.17 -1.80 16 5 C -0.08 -1.48 5.81 29.90 0.17 -1.30 16 6 C -0.14 -3.52 5.74 -19.71 -0.11 -3.64 16 7 C -0.10 -2.28 9.63 22.31 0.21 -2.07 16 8 C -0.16 -3.63 10.05 22.24 0.22 -3.41 16 9 C -0.11 -2.72 10.03 22.18 0.22 -2.50 16 10 C -0.18 -4.83 8.14 22.50 0.18 -4.64 16 11 C 0.12 3.16 4.91 38.30 0.19 3.35 16 12 N -0.48 -12.24 4.51 -671.94 -3.03 -15.27 16 13 C 0.06 1.62 4.60 86.30 0.40 2.02 16 14 C -0.11 -3.77 4.60 30.59 0.14 -3.63 16 15 C -0.08 -3.33 5.67 71.98 0.41 -2.92 16 16 S -0.20 -10.94 21.44 -56.49 -1.21 -12.16 16 17 C -0.54 -31.41 9.50 67.95 0.65 -30.76 16 18 H 0.07 4.11 7.80 -2.91 -0.02 4.09 16 19 C 0.02 0.93 5.49 84.86 0.47 1.40 16 20 N -0.91 -55.46 13.22 21.65 0.29 -55.17 16 21 Si 0.99 44.10 29.55 68.60 2.03 46.13 16 22 H -0.26 -11.25 7.11 99.48 0.71 -10.54 16 23 H -0.27 -11.74 7.11 99.48 0.71 -11.03 16 24 H -0.26 -11.16 7.11 99.48 0.71 -10.45 16 25 H 0.07 1.22 8.14 -2.38 -0.02 1.20 16 26 H 0.05 1.10 6.42 -2.39 -0.02 1.08 16 27 H 0.08 1.23 8.14 -2.39 -0.02 1.21 16 28 H 0.10 1.31 8.14 -2.39 -0.02 1.29 16 29 H 0.07 1.34 8.14 -2.39 -0.02 1.32 16 30 H 0.07 1.40 8.14 -2.39 -0.02 1.38 16 31 H 0.09 1.40 8.14 -2.39 -0.02 1.38 16 32 H 0.14 2.39 8.06 -2.91 -0.02 2.37 16 33 H 0.14 2.45 8.06 -2.91 -0.02 2.43 16 34 H 0.13 2.83 8.06 -2.91 -0.02 2.80 16 35 H 0.12 3.31 5.80 -2.91 -0.02 3.30 16 36 H 0.10 2.37 6.22 -2.39 -0.01 2.35 16 37 H 0.09 2.28 5.84 -2.39 -0.01 2.26 16 38 H 0.05 2.01 6.68 -2.39 -0.02 1.99 16 39 H 0.06 2.14 6.44 -2.39 -0.02 2.12 16 40 H 0.07 2.64 8.14 -2.40 -0.02 2.62 16 41 H 0.06 2.53 8.14 -2.39 -0.02 2.51 16 42 H 0.27 15.39 8.31 -92.71 -0.77 14.62 16 Total: -1.00 -68.47 339.86 3.12 -65.34 By element: Atomic # 1 Polarization: 20.37 SS G_CDS: 0.99 Total: 21.37 kcal Atomic # 6 Polarization: -54.30 SS G_CDS: 4.06 Total: -50.24 kcal Atomic # 7 Polarization: -67.70 SS G_CDS: -2.74 Total: -70.44 kcal Atomic # 14 Polarization: 44.10 SS G_CDS: 2.03 Total: 46.13 kcal Atomic # 16 Polarization: -10.94 SS G_CDS: -1.21 Total: -12.16 kcal Total: -68.47 3.12 -65.34 kcal The number of atoms in the molecule is 42 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000072513387.mol2 42 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 61.875 kcal (2) G-P(sol) polarization free energy of solvation -68.466 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -6.591 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.125 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -65.341 kcal (6) G-S(sol) free energy of system = (1) + (5) -3.466 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.53 seconds