Wall clock time and date at job start Tue Mar 31 2020 06:32:31 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52996 * 1 3 3 H 1.09003 * 109.43948 * 2 1 4 4 C 1.53041 * 109.43751 * 240.07926 * 2 1 3 5 5 C 1.53385 * 107.92836 * 192.67652 * 4 2 1 6 6 N 1.46436 * 108.78315 * 68.18860 * 5 4 2 7 7 C 1.46899 * 110.99796 * 72.26178 * 6 5 4 8 8 C 1.52996 * 109.47096 * 170.00139 * 7 6 5 9 9 C 1.52997 * 109.47411 * 180.02562 * 8 7 6 10 10 S 1.80997 * 109.47282 * 179.97438 * 9 8 7 11 11 C 1.76204 * 100.00064 * 179.97438 * 10 9 8 12 12 H 1.08002 * 119.99881 * 0.02562 * 11 10 9 13 13 C 1.38794 * 119.99947 * 180.02562 * 11 10 9 14 14 N 1.31629 * 120.00487 * 0.02562 * 13 11 10 15 15 Si 1.86807 * 119.99963 * 180.02562 * 13 11 10 16 16 H 1.48499 * 109.47011 * 359.97438 * 15 13 11 17 17 H 1.48493 * 109.47292 * 120.00122 * 15 13 11 18 18 H 1.48498 * 109.46904 * 240.00010 * 15 13 11 19 19 C 1.39456 * 113.10097 * 306.93518 * 6 5 4 20 20 C 1.39616 * 117.58034 * 199.69847 * 19 6 5 21 21 C 1.37803 * 120.42255 * 180.21037 * 20 19 6 22 22 C 1.38311 * 119.94749 * 359.97438 * 21 20 19 23 23 C 1.38058 * 119.89097 * 359.85619 * 22 21 20 24 24 C 1.38364 * 123.02841 * 19.66432 * 19 6 5 25 25 H 1.08997 * 109.47354 * 179.97438 * 1 2 3 26 26 H 1.09005 * 109.47525 * 299.92058 * 1 2 3 27 27 H 1.09006 * 109.47202 * 59.91836 * 1 2 3 28 28 H 1.09009 * 109.76959 * 73.07339 * 4 2 1 29 29 H 1.09001 * 109.77597 * 312.29052 * 4 2 1 30 30 H 1.09002 * 109.61057 * 188.02249 * 5 4 2 31 31 H 1.09000 * 109.60948 * 308.35876 * 5 4 2 32 32 H 1.08999 * 109.47461 * 290.00236 * 7 6 5 33 33 H 1.09004 * 109.47237 * 49.99825 * 7 6 5 34 34 H 1.09001 * 109.46870 * 299.99850 * 8 7 6 35 35 H 1.08994 * 109.47394 * 59.99816 * 8 7 6 36 36 H 1.08999 * 109.47211 * 300.00137 * 9 8 7 37 37 H 1.09004 * 109.47172 * 59.99533 * 9 8 7 38 38 H 0.96994 * 120.00264 * 180.02562 * 14 13 11 39 39 H 1.08002 * 119.78856 * 0.22398 * 20 19 6 40 40 H 1.08000 * 120.02873 * 180.02562 * 21 20 19 41 41 H 1.08000 * 120.05600 * 179.86149 * 22 21 20 42 42 H 1.07996 * 119.75368 * 180.02562 * 23 22 21 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8927 1.0279 0.0000 4 6 2.0392 -0.7199 -1.2508 5 6 3.5390 -0.9832 -1.0663 6 7 3.7165 -1.9734 -0.0022 7 6 3.3061 -3.3099 -0.4530 8 6 3.7333 -4.3511 0.5834 9 6 3.3065 -5.7432 0.1136 10 16 3.8126 -6.9751 1.3393 11 6 3.2124 -8.4404 0.5663 12 1 2.7070 -8.3802 -0.3863 13 6 3.3891 -9.6719 1.1816 14 7 4.0045 -9.7453 2.3428 15 14 2.7534 -11.2254 0.3617 16 1 2.1035 -10.8748 -0.9266 17 1 3.8866 -12.1512 0.1093 18 1 1.7640 -11.8851 1.2512 19 6 3.0655 -1.6271 1.1815 20 6 3.4914 -2.2460 2.3583 21 6 2.8862 -1.9505 3.5606 22 6 1.8504 -1.0350 3.6056 23 6 1.4273 -0.4172 2.4457 24 6 2.0319 -0.7087 1.2329 25 1 -0.3634 -1.0276 -0.0005 26 1 -0.3634 0.5126 0.8907 27 1 -0.3634 0.5151 -0.8893 28 1 1.8803 -0.0923 -2.1279 29 1 1.5111 -1.6655 -1.3729 30 1 3.9604 -1.3658 -1.9960 31 1 4.0420 -0.0562 -0.7910 32 1 2.2227 -3.3371 -0.5700 33 1 3.7804 -3.5325 -1.4088 34 1 4.8167 -4.3239 0.7003 35 1 3.2590 -4.1285 1.5391 36 1 2.2232 -5.7708 -0.0038 37 1 3.7812 -5.9657 -0.8421 38 1 4.1283 -10.6059 2.7726 39 1 4.3004 -2.9607 2.3262 40 1 3.2210 -2.4327 4.4671 41 1 1.3733 -0.8038 4.5465 42 1 0.6186 0.2975 2.4835 RHF calculation, no. of doubly occupied orbitals= 52 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000072514846.mol2 42 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 06:32:31 Heat of formation + Delta-G solvation = 14.627073 kcal Electronic energy + Delta-G solvation = -20864.630822 eV Core-core repulsion = 17934.862010 eV Total energy + Delta-G solvation = -2929.768812 eV No. of doubly occupied orbitals = 52 Molecular weight (most abundant/longest-lived isotopes) = 291.135 amu Computer time = 7.02 seconds Orbital eigenvalues (eV) -40.85714 -37.04741 -35.74855 -32.74847 -32.39369 -30.39948 -29.95612 -28.20193 -25.81185 -25.08579 -23.61009 -23.15358 -21.48753 -21.16803 -19.15911 -17.44521 -16.84291 -16.30991 -15.88498 -15.13273 -14.79451 -14.68974 -14.22205 -14.11441 -13.94131 -13.84122 -13.22214 -13.07509 -12.83867 -12.56673 -12.22957 -12.07650 -11.92262 -11.76008 -11.50391 -11.40503 -11.17735 -11.06500 -10.87774 -10.61930 -10.59209 -10.41847 -10.29139 -9.56784 -9.21562 -9.04892 -8.59375 -8.27345 -7.83460 -6.50118 -6.21230 -3.90929 1.42482 1.48707 3.21869 3.22992 3.30834 3.52797 3.75274 3.93684 4.24192 4.49706 4.53431 4.69144 4.89272 5.11643 5.14897 5.16370 5.19439 5.25050 5.28292 5.37340 5.39001 5.50125 5.52446 5.56485 5.60402 5.70912 5.71533 5.75827 5.88846 5.90994 5.92761 6.07035 6.10963 6.16808 6.35635 6.43565 6.50936 6.60445 6.66235 6.75138 6.89428 7.08043 7.47706 7.62467 8.38550 9.25273 10.87022 Molecular weight = 291.14amu Principal moments of inertia in cm(-1) A = 0.022218 B = 0.003538 C = 0.003340 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1259.930422 B = 7911.487988 C = 8382.123876 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.143 4.143 2 C -0.048 4.048 3 H 0.079 0.921 4 C -0.155 4.155 5 C 0.057 3.943 6 N -0.498 5.498 7 C 0.065 3.935 8 C -0.108 4.108 9 C -0.112 4.112 10 S -0.130 6.130 11 C -0.516 4.516 12 H 0.072 0.928 13 C 0.071 3.929 14 N -0.869 5.869 15 Si 0.917 3.083 16 H -0.272 1.272 17 H -0.280 1.280 18 H -0.280 1.280 19 C 0.113 3.887 20 C -0.116 4.116 21 C -0.109 4.109 22 C -0.136 4.136 23 C -0.109 4.109 24 C -0.119 4.119 25 H 0.057 0.943 26 H 0.058 0.942 27 H 0.056 0.944 28 H 0.073 0.927 29 H 0.070 0.930 30 H 0.082 0.918 31 H 0.079 0.921 32 H 0.040 0.960 33 H 0.079 0.921 34 H 0.074 0.926 35 H 0.079 0.921 36 H 0.057 0.943 37 H 0.059 0.941 38 H 0.266 0.734 39 H 0.136 0.864 40 H 0.124 0.876 41 H 0.118 0.882 42 H 0.118 0.882 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -4.553 21.205 -3.778 22.014 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.200 4.200 2 C -0.066 4.066 3 H 0.097 0.903 4 C -0.194 4.194 5 C -0.071 4.071 6 N -0.214 5.214 7 C -0.061 4.061 8 C -0.146 4.146 9 C -0.261 4.261 10 S 0.098 5.902 11 C -0.664 4.664 12 H 0.090 0.910 13 C -0.138 4.138 14 N -0.505 5.505 15 Si 0.744 3.256 16 H -0.196 1.196 17 H -0.206 1.206 18 H -0.206 1.206 19 C 0.017 3.983 20 C -0.135 4.135 21 C -0.128 4.128 22 C -0.155 4.155 23 C -0.128 4.128 24 C -0.122 4.122 25 H 0.076 0.924 26 H 0.077 0.923 27 H 0.075 0.925 28 H 0.092 0.908 29 H 0.088 0.912 30 H 0.100 0.900 31 H 0.097 0.903 32 H 0.058 0.942 33 H 0.097 0.903 34 H 0.093 0.907 35 H 0.098 0.902 36 H 0.076 0.924 37 H 0.078 0.922 38 H 0.076 0.924 39 H 0.154 0.846 40 H 0.142 0.858 41 H 0.136 0.864 42 H 0.135 0.865 Dipole moment (debyes) X Y Z Total from point charges -3.424 21.158 -2.610 21.592 hybrid contribution -1.840 -1.163 -1.789 2.818 sum -5.263 19.996 -4.400 21.140 Atomic orbital electron populations 1.21862 0.94229 1.02262 1.01661 1.20036 0.95904 0.98694 0.91955 0.90307 1.22291 0.97908 1.01448 0.97729 1.22206 0.94792 0.95755 0.94314 1.58817 1.55768 1.03553 1.03308 1.22251 0.98555 0.86194 0.99116 1.21723 1.02209 0.91910 0.98753 1.23220 1.02350 0.97636 1.02899 1.84603 1.77165 0.99529 1.28908 1.22737 1.43087 0.91868 1.08693 0.90972 1.25003 0.94989 0.98802 0.94960 1.70029 1.39881 1.25577 1.15037 0.86129 0.78592 0.81647 0.79257 1.19634 1.20558 1.20583 1.18485 0.92082 0.96693 0.91040 1.21385 1.00991 1.00181 0.90940 1.21050 0.96369 0.97575 0.97795 1.21027 0.98271 0.98178 0.98013 1.20917 0.99763 1.00177 0.91921 1.19849 0.95972 1.01083 0.95287 0.92423 0.92286 0.92501 0.90809 0.91160 0.89964 0.90307 0.94212 0.90267 0.90726 0.90230 0.92415 0.92206 0.92383 0.84591 0.85780 0.86390 0.86456 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -1.24 8.74 37.16 0.32 -0.91 16 2 C -0.05 -0.47 2.86 -91.70 -0.26 -0.73 16 3 H 0.08 0.71 8.14 -51.93 -0.42 0.28 16 4 C -0.15 -1.47 5.35 -26.51 -0.14 -1.61 16 5 C 0.06 0.59 5.81 -3.88 -0.02 0.57 16 6 N -0.50 -6.54 4.59 -171.26 -0.79 -7.33 16 7 C 0.07 0.92 4.57 -3.83 -0.02 0.90 16 8 C -0.11 -1.82 3.98 -26.73 -0.11 -1.92 16 9 C -0.11 -2.30 5.67 37.16 0.21 -2.09 16 10 S -0.13 -3.44 21.44 -107.50 -2.30 -5.74 16 11 C -0.52 -14.94 9.50 30.94 0.29 -14.64 16 12 H 0.07 2.03 7.80 -52.49 -0.41 1.62 16 13 C 0.07 2.04 5.49 -17.43 -0.10 1.95 16 14 N -0.87 -26.14 13.22 55.49 0.73 -25.40 16 15 Si 0.92 21.69 29.55 -169.99 -5.02 16.67 16 16 H -0.27 -6.28 7.11 56.52 0.40 -5.88 16 17 H -0.28 -6.48 7.11 56.52 0.40 -6.08 16 18 H -0.28 -6.50 7.11 56.52 0.40 -6.10 16 19 C 0.11 1.56 5.06 -83.83 -0.42 1.13 16 20 C -0.12 -1.65 7.37 -39.23 -0.29 -1.94 16 21 C -0.11 -1.41 10.04 -39.71 -0.40 -1.81 16 22 C -0.14 -1.59 10.05 -39.62 -0.40 -1.99 16 23 C -0.11 -1.25 9.06 -39.51 -0.36 -1.61 16 24 C -0.12 -1.46 5.41 -104.39 -0.56 -2.02 16 25 H 0.06 0.57 8.14 -51.93 -0.42 0.14 16 26 H 0.06 0.46 6.52 -51.93 -0.34 0.13 16 27 H 0.06 0.41 8.14 -51.93 -0.42 -0.01 16 28 H 0.07 0.56 8.14 -51.92 -0.42 0.14 16 29 H 0.07 0.75 6.60 -51.93 -0.34 0.41 16 30 H 0.08 0.76 7.88 -51.93 -0.41 0.35 16 31 H 0.08 0.78 8.11 -51.93 -0.42 0.36 16 32 H 0.04 0.57 6.90 -51.93 -0.36 0.21 16 33 H 0.08 1.03 7.90 -51.93 -0.41 0.62 16 34 H 0.07 1.29 8.01 -51.93 -0.42 0.87 16 35 H 0.08 1.40 5.06 -51.93 -0.26 1.13 16 36 H 0.06 1.19 8.14 -51.92 -0.42 0.77 16 37 H 0.06 1.21 8.14 -51.91 -0.42 0.78 16 38 H 0.27 7.44 8.31 -40.82 -0.34 7.10 16 39 H 0.14 2.02 6.17 -52.49 -0.32 1.70 16 40 H 0.12 1.42 8.06 -52.49 -0.42 1.00 16 41 H 0.12 1.12 8.06 -52.49 -0.42 0.69 16 42 H 0.12 1.09 6.50 -52.49 -0.34 0.75 16 LS Contribution 339.82 15.07 5.12 5.12 Total: -1.00 -31.35 339.82 -11.06 -42.41 By element: Atomic # 1 Polarization: 7.56 SS G_CDS: -6.55 Total: 1.01 kcal Atomic # 6 Polarization: -24.48 SS G_CDS: -2.25 Total: -26.73 kcal Atomic # 7 Polarization: -32.68 SS G_CDS: -0.05 Total: -32.73 kcal Atomic # 14 Polarization: 21.69 SS G_CDS: -5.02 Total: 16.67 kcal Atomic # 16 Polarization: -3.44 SS G_CDS: -2.30 Total: -5.74 kcal Total LS contribution 5.12 Total: 5.12 kcal Total: -31.35 -11.06 -42.41 kcal The number of atoms in the molecule is 42 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000072514846.mol2 42 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 57.040 kcal (2) G-P(sol) polarization free energy of solvation -31.354 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 25.686 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -11.059 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -42.413 kcal (6) G-S(sol) free energy of system = (1) + (5) 14.627 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 7.02 seconds