Wall clock time and date at job start Tue Mar 31 2020 06:32:28 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52996 * 1 3 3 H 1.09003 * 109.43948 * 2 1 4 4 C 1.53041 * 109.43751 * 240.07926 * 2 1 3 5 5 C 1.53385 * 107.92836 * 192.67652 * 4 2 1 6 6 N 1.46436 * 108.78315 * 68.18860 * 5 4 2 7 7 C 1.46899 * 110.99796 * 72.26178 * 6 5 4 8 8 C 1.52996 * 109.47096 * 170.00139 * 7 6 5 9 9 C 1.52997 * 109.47411 * 180.02562 * 8 7 6 10 10 S 1.80997 * 109.47282 * 179.97438 * 9 8 7 11 11 C 1.76204 * 100.00064 * 179.97438 * 10 9 8 12 12 H 1.08002 * 119.99881 * 0.02562 * 11 10 9 13 13 C 1.38794 * 119.99947 * 180.02562 * 11 10 9 14 14 N 1.31629 * 120.00487 * 0.02562 * 13 11 10 15 15 Si 1.86807 * 119.99963 * 180.02562 * 13 11 10 16 16 H 1.48499 * 109.47011 * 359.97438 * 15 13 11 17 17 H 1.48493 * 109.47292 * 120.00122 * 15 13 11 18 18 H 1.48498 * 109.46904 * 240.00010 * 15 13 11 19 19 C 1.39456 * 113.10097 * 306.93518 * 6 5 4 20 20 C 1.39616 * 117.58034 * 199.69847 * 19 6 5 21 21 C 1.37803 * 120.42255 * 180.21037 * 20 19 6 22 22 C 1.38311 * 119.94749 * 359.97438 * 21 20 19 23 23 C 1.38058 * 119.89097 * 359.85619 * 22 21 20 24 24 C 1.38364 * 123.02841 * 19.66432 * 19 6 5 25 25 H 1.08997 * 109.47354 * 179.97438 * 1 2 3 26 26 H 1.09005 * 109.47525 * 299.92058 * 1 2 3 27 27 H 1.09006 * 109.47202 * 59.91836 * 1 2 3 28 28 H 1.09009 * 109.76959 * 73.07339 * 4 2 1 29 29 H 1.09001 * 109.77597 * 312.29052 * 4 2 1 30 30 H 1.09002 * 109.61057 * 188.02249 * 5 4 2 31 31 H 1.09000 * 109.60948 * 308.35876 * 5 4 2 32 32 H 1.08999 * 109.47461 * 290.00236 * 7 6 5 33 33 H 1.09004 * 109.47237 * 49.99825 * 7 6 5 34 34 H 1.09001 * 109.46870 * 299.99850 * 8 7 6 35 35 H 1.08994 * 109.47394 * 59.99816 * 8 7 6 36 36 H 1.08999 * 109.47211 * 300.00137 * 9 8 7 37 37 H 1.09004 * 109.47172 * 59.99533 * 9 8 7 38 38 H 0.96994 * 120.00264 * 180.02562 * 14 13 11 39 39 H 1.08002 * 119.78856 * 0.22398 * 20 19 6 40 40 H 1.08000 * 120.02873 * 180.02562 * 21 20 19 41 41 H 1.08000 * 120.05600 * 179.86149 * 22 21 20 42 42 H 1.07996 * 119.75368 * 180.02562 * 23 22 21 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8927 1.0279 0.0000 4 6 2.0392 -0.7199 -1.2508 5 6 3.5390 -0.9832 -1.0663 6 7 3.7165 -1.9734 -0.0022 7 6 3.3061 -3.3099 -0.4530 8 6 3.7333 -4.3511 0.5834 9 6 3.3065 -5.7432 0.1136 10 16 3.8126 -6.9751 1.3393 11 6 3.2124 -8.4404 0.5663 12 1 2.7070 -8.3802 -0.3863 13 6 3.3891 -9.6719 1.1816 14 7 4.0045 -9.7453 2.3428 15 14 2.7534 -11.2254 0.3617 16 1 2.1035 -10.8748 -0.9266 17 1 3.8866 -12.1512 0.1093 18 1 1.7640 -11.8851 1.2512 19 6 3.0655 -1.6271 1.1815 20 6 3.4914 -2.2460 2.3583 21 6 2.8862 -1.9505 3.5606 22 6 1.8504 -1.0350 3.6056 23 6 1.4273 -0.4172 2.4457 24 6 2.0319 -0.7087 1.2329 25 1 -0.3634 -1.0276 -0.0005 26 1 -0.3634 0.5126 0.8907 27 1 -0.3634 0.5151 -0.8893 28 1 1.8803 -0.0923 -2.1279 29 1 1.5111 -1.6655 -1.3729 30 1 3.9604 -1.3658 -1.9960 31 1 4.0420 -0.0562 -0.7910 32 1 2.2227 -3.3371 -0.5700 33 1 3.7804 -3.5325 -1.4088 34 1 4.8167 -4.3239 0.7003 35 1 3.2590 -4.1285 1.5391 36 1 2.2232 -5.7708 -0.0038 37 1 3.7812 -5.9657 -0.8421 38 1 4.1283 -10.6059 2.7726 39 1 4.3004 -2.9607 2.3262 40 1 3.2210 -2.4327 4.4671 41 1 1.3733 -0.8038 4.5465 42 1 0.6186 0.2975 2.4835 RHF calculation, no. of doubly occupied orbitals= 52 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000072514846.mol2 42 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 06:32:28 Heat of formation + Delta-G solvation = -1.795128 kcal Electronic energy + Delta-G solvation = -20865.342942 eV Core-core repulsion = 17934.862010 eV Total energy + Delta-G solvation = -2930.480932 eV No. of doubly occupied orbitals = 52 Molecular weight (most abundant/longest-lived isotopes) = 291.135 amu Computer time = 0.53 seconds Orbital eigenvalues (eV) -41.78789 -38.01081 -36.68910 -34.62292 -33.99744 -31.28824 -30.88843 -29.19353 -27.83304 -26.44765 -24.49372 -24.05640 -22.74367 -22.16196 -20.08734 -19.54314 -17.83477 -17.22478 -16.93330 -16.90361 -16.38121 -16.03711 -15.35971 -15.18885 -15.10930 -14.74054 -14.65338 -14.28284 -13.90805 -13.56240 -13.42511 -13.28664 -13.15744 -12.95779 -12.81365 -12.71613 -12.59651 -12.36904 -12.28281 -12.10680 -11.70425 -11.44503 -11.36127 -11.33057 -11.16017 -10.34186 -10.18670 -9.55333 -8.81450 -8.67112 -8.38006 -6.14302 0.46191 0.50985 1.30695 1.37684 1.48659 1.72799 2.27197 2.72039 2.96007 2.96255 3.31733 3.70464 3.76326 3.88858 3.94551 4.03790 4.17502 4.28299 4.30343 4.35150 4.44462 4.48792 4.50138 4.63379 4.65314 4.69604 4.74408 4.75158 4.81561 4.95613 5.03054 5.07741 5.12644 5.18464 5.23824 5.26050 5.39056 5.39446 5.48975 5.58828 5.69323 5.91326 6.11366 6.17572 6.50693 7.04195 8.71718 Molecular weight = 291.14amu Principal moments of inertia in cm(-1) A = 0.022218 B = 0.003538 C = 0.003340 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1259.930422 B = 7911.487988 C = 8382.123876 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.140 4.140 2 C -0.047 4.047 3 H 0.093 0.907 4 C -0.150 4.150 5 C 0.054 3.946 6 N -0.507 5.507 7 C 0.077 3.923 8 C -0.095 4.095 9 C -0.086 4.086 10 S -0.193 6.193 11 C -0.539 4.539 12 H 0.072 0.928 13 C 0.016 3.984 14 N -0.907 5.907 15 Si 0.994 3.006 16 H -0.263 1.263 17 H -0.270 1.270 18 H -0.271 1.271 19 C 0.095 3.905 20 C -0.139 4.139 21 C -0.125 4.125 22 C -0.139 4.139 23 C -0.111 4.111 24 C -0.125 4.125 25 H 0.040 0.960 26 H 0.067 0.933 27 H 0.073 0.927 28 H 0.098 0.902 29 H 0.056 0.944 30 H 0.095 0.905 31 H 0.085 0.915 32 H 0.037 0.963 33 H 0.092 0.908 34 H 0.067 0.933 35 H 0.071 0.929 36 H 0.056 0.944 37 H 0.065 0.935 38 H 0.271 0.729 39 H 0.118 0.882 40 H 0.129 0.871 41 H 0.141 0.859 42 H 0.143 0.857 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -5.982 22.524 -5.295 23.899 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.197 4.197 2 C -0.066 4.066 3 H 0.111 0.889 4 C -0.189 4.189 5 C -0.073 4.073 6 N -0.224 5.224 7 C -0.049 4.049 8 C -0.133 4.133 9 C -0.236 4.236 10 S 0.035 5.965 11 C -0.687 4.687 12 H 0.090 0.910 13 C -0.189 4.189 14 N -0.544 5.544 15 Si 0.816 3.184 16 H -0.187 1.187 17 H -0.196 1.196 18 H -0.197 1.197 19 C -0.001 4.001 20 C -0.158 4.158 21 C -0.143 4.143 22 C -0.157 4.157 23 C -0.130 4.130 24 C -0.127 4.127 25 H 0.060 0.940 26 H 0.086 0.914 27 H 0.092 0.908 28 H 0.116 0.884 29 H 0.074 0.926 30 H 0.113 0.887 31 H 0.103 0.897 32 H 0.056 0.944 33 H 0.111 0.889 34 H 0.086 0.914 35 H 0.089 0.911 36 H 0.075 0.925 37 H 0.083 0.917 38 H 0.081 0.919 39 H 0.136 0.864 40 H 0.147 0.853 41 H 0.159 0.841 42 H 0.161 0.839 Dipole moment (debyes) X Y Z Total from point charges -4.849 22.498 -4.129 23.382 hybrid contribution -1.385 -1.459 -1.281 2.385 sum -6.234 21.040 -5.410 22.601 Atomic orbital electron populations 1.21840 0.93255 1.01584 1.02992 1.20123 0.96632 0.99000 0.90806 0.88873 1.22264 0.96762 1.01232 0.98617 1.22337 0.95824 0.95261 0.93869 1.58755 1.56059 1.03538 1.04023 1.22041 0.98406 0.86193 0.98298 1.21590 1.01584 0.90725 0.99425 1.23126 1.02070 0.97381 1.00987 1.84635 1.77925 1.01530 1.32389 1.23076 1.43587 0.93054 1.08958 0.91003 1.26062 0.94861 1.02465 0.95490 1.70159 1.40876 1.26774 1.16561 0.84967 0.78233 0.76773 0.78401 1.18672 1.19555 1.19651 1.18630 0.93021 0.97520 0.90911 1.21400 1.01357 1.00870 0.92190 1.21238 0.97087 0.98341 0.97657 1.21340 0.97621 0.97378 0.99364 1.21270 1.00022 1.00184 0.91478 1.20212 0.95227 1.00473 0.96817 0.94045 0.91404 0.90795 0.88359 0.92556 0.88709 0.89695 0.94434 0.88926 0.91441 0.91069 0.92491 0.91674 0.91948 0.86417 0.85282 0.84079 0.83932 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -2.02 8.74 71.98 0.63 -1.39 16 2 C -0.05 -0.80 2.86 -11.49 -0.03 -0.83 16 3 H 0.09 1.35 8.14 -2.39 -0.02 1.33 16 4 C -0.15 -2.46 5.35 30.74 0.16 -2.30 16 5 C 0.05 1.01 5.81 86.52 0.50 1.51 16 6 N -0.51 -12.97 4.59 -695.76 -3.19 -16.16 16 7 C 0.08 2.13 4.57 86.30 0.39 2.53 16 8 C -0.09 -3.27 3.98 30.59 0.12 -3.15 16 9 C -0.09 -3.60 5.67 71.98 0.41 -3.19 16 10 S -0.19 -10.56 21.44 -56.49 -1.21 -11.77 16 11 C -0.54 -31.73 9.50 67.95 0.65 -31.08 16 12 H 0.07 4.08 7.80 -2.91 -0.02 4.06 16 13 C 0.02 0.93 5.49 84.86 0.47 1.40 16 14 N -0.91 -55.45 13.22 21.65 0.29 -55.16 16 15 Si 0.99 44.44 29.55 68.60 2.03 46.46 16 16 H -0.26 -11.23 7.11 99.48 0.71 -10.52 16 17 H -0.27 -11.60 7.11 99.48 0.71 -10.89 16 18 H -0.27 -11.67 7.11 99.48 0.71 -10.96 16 19 C 0.10 2.59 5.06 38.29 0.19 2.79 16 20 C -0.14 -4.10 7.37 22.50 0.17 -3.93 16 21 C -0.12 -3.29 10.04 22.18 0.22 -3.06 16 22 C -0.14 -3.09 10.05 22.24 0.22 -2.87 16 23 C -0.11 -2.34 9.06 22.32 0.20 -2.14 16 24 C -0.12 -2.86 5.41 -19.71 -0.11 -2.97 16 25 H 0.04 0.73 8.14 -2.39 -0.02 0.72 16 26 H 0.07 0.85 6.52 -2.38 -0.02 0.84 16 27 H 0.07 0.83 8.14 -2.38 -0.02 0.81 16 28 H 0.10 1.14 8.14 -2.38 -0.02 1.13 16 29 H 0.06 1.10 6.60 -2.39 -0.02 1.08 16 30 H 0.09 1.53 7.88 -2.39 -0.02 1.51 16 31 H 0.08 1.50 8.11 -2.39 -0.02 1.48 16 32 H 0.04 1.05 6.90 -2.39 -0.02 1.04 16 33 H 0.09 2.29 7.90 -2.38 -0.02 2.27 16 34 H 0.07 2.41 8.01 -2.39 -0.02 2.39 16 35 H 0.07 2.61 5.06 -2.39 -0.01 2.60 16 36 H 0.06 2.37 8.14 -2.40 -0.02 2.35 16 37 H 0.06 2.63 8.14 -2.39 -0.02 2.61 16 38 H 0.27 15.33 8.31 -92.71 -0.77 14.55 16 39 H 0.12 3.78 6.17 -2.91 -0.02 3.76 16 40 H 0.13 3.09 8.06 -2.91 -0.02 3.07 16 41 H 0.14 2.40 8.06 -2.91 -0.02 2.38 16 42 H 0.14 2.22 6.50 -2.91 -0.02 2.20 16 Total: -1.00 -68.63 339.82 3.10 -65.53 By element: Atomic # 1 Polarization: 18.80 SS G_CDS: 0.99 Total: 19.79 kcal Atomic # 6 Polarization: -52.89 SS G_CDS: 4.20 Total: -48.69 kcal Atomic # 7 Polarization: -68.42 SS G_CDS: -2.91 Total: -71.32 kcal Atomic # 14 Polarization: 44.44 SS G_CDS: 2.03 Total: 46.46 kcal Atomic # 16 Polarization: -10.56 SS G_CDS: -1.21 Total: -11.77 kcal Total: -68.63 3.10 -65.53 kcal The number of atoms in the molecule is 42 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000072514846.mol2 42 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 63.739 kcal (2) G-P(sol) polarization free energy of solvation -68.634 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -4.895 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.100 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -65.534 kcal (6) G-S(sol) free energy of system = (1) + (5) -1.795 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.53 seconds