Wall clock time and date at job start Tue Mar 31 2020 06:07:41 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53000 * 1 3 3 C 1.50697 * 109.47065 * 2 1 4 4 C 1.37960 * 119.90349 * 7.13132 * 3 2 1 5 5 C 1.38255 * 120.26238 * 180.02562 * 4 3 2 6 6 C 1.38348 * 119.88947 * 359.88915 * 5 4 3 7 7 C 1.37876 * 120.07654 * 359.96509 * 6 5 4 8 8 C 1.39006 * 120.48277 * 0.29349 * 7 6 5 9 9 N 1.40036 * 110.95351 * 179.21401 * 8 7 6 10 10 C 1.46900 * 111.00173 * 140.22666 * 9 8 7 11 11 C 1.53005 * 109.47115 * 306.79626 * 10 9 8 12 12 C 1.52996 * 109.46870 * 177.64465 * 11 10 9 13 13 S 1.81005 * 109.46865 * 184.62731 * 12 11 10 14 14 C 1.76204 * 99.99977 * 180.02562 * 13 12 11 15 15 H 1.07997 * 119.99713 * 0.02562 * 14 13 12 16 16 C 1.38797 * 120.00019 * 179.97438 * 14 13 12 17 17 N 1.31628 * 119.99864 * 0.02562 * 16 14 13 18 18 Si 1.86804 * 120.00010 * 179.97438 * 16 14 13 19 19 H 1.48505 * 109.46766 * 90.00286 * 18 16 14 20 20 H 1.48501 * 109.47007 * 209.99965 * 18 16 14 21 21 H 1.48494 * 109.47056 * 330.00196 * 18 16 14 22 22 C 1.47908 * 107.87862 * 18.41089 * 9 8 7 23 23 C 1.51582 * 131.57162 * 180.29505 * 7 6 5 24 24 H 1.08997 * 109.47565 * 57.93829 * 1 2 3 25 25 H 1.08996 * 109.47529 * 177.94440 * 1 2 3 26 26 H 1.09001 * 109.46958 * 297.94337 * 1 2 3 27 27 H 1.08993 * 109.47058 * 240.00166 * 2 1 3 28 28 H 1.09003 * 109.47087 * 119.99723 * 2 1 3 29 29 H 1.07994 * 119.86756 * 0.04363 * 4 3 2 30 30 H 1.08000 * 120.05849 * 179.90936 * 5 4 3 31 31 H 1.08001 * 119.96663 * 180.02562 * 6 5 4 32 32 H 1.09003 * 109.47039 * 66.79782 * 10 9 8 33 33 H 1.08998 * 109.47286 * 186.79809 * 10 9 8 34 34 H 1.08999 * 109.47342 * 297.64719 * 11 10 9 35 35 H 1.09003 * 109.46789 * 57.65201 * 11 10 9 36 36 H 1.09002 * 109.47566 * 304.62527 * 12 11 10 37 37 H 1.09001 * 109.47136 * 64.63350 * 12 11 10 38 38 H 0.97003 * 119.99874 * 180.02562 * 17 16 14 39 39 H 1.09004 * 110.77915 * 214.41308 * 22 9 8 40 40 H 1.08996 * 110.77964 * 90.99061 * 22 9 8 41 41 H 1.08994 * 110.74153 * 45.70987 * 23 7 6 42 42 H 1.09006 * 110.89317 * 282.45632 * 23 7 6 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0323 1.4208 0.0000 4 6 1.1428 2.4648 0.1485 5 6 1.5954 3.7711 0.1490 6 6 2.9460 4.0329 0.0024 7 6 3.8395 2.9930 -0.1433 8 6 3.3940 1.6763 -0.1505 9 7 4.4615 0.7874 -0.3273 10 6 4.3027 -0.4015 0.5209 11 6 4.0860 0.0325 1.9720 12 6 3.8620 -1.2032 2.8458 13 16 3.4707 -0.6846 4.5352 14 6 3.2686 -2.2593 5.2996 15 1 3.3934 -3.1613 4.7191 16 6 2.9499 -2.3403 6.6481 17 7 2.7982 -1.2409 7.3557 18 14 2.7349 -4.0097 7.4583 19 1 4.0407 -4.4718 7.9939 20 1 1.7557 -3.8983 8.5692 21 1 2.2375 -4.9860 6.4560 22 6 5.7113 1.5080 -0.0011 23 6 5.3457 2.9773 -0.3132 24 1 -0.3634 0.5455 -0.8709 25 1 -0.3634 -1.0269 -0.0369 26 1 -0.3633 0.4816 0.9079 27 1 1.8933 -0.5138 -0.8899 28 1 1.8933 -0.5138 0.8900 29 1 0.0887 2.2608 0.2650 30 1 0.8960 4.5860 0.2640 31 1 3.3010 5.0529 0.0031 32 1 3.4418 -0.9775 0.1815 33 1 5.2000 -1.0168 0.4558 34 1 4.9645 0.5727 2.3248 35 1 3.2124 0.6819 2.0304 36 1 3.0340 -1.7872 2.4440 37 1 4.7662 -1.8119 2.8529 38 1 2.5759 -1.2975 8.2982 39 1 6.5298 1.1698 -0.6365 40 1 5.9633 1.3878 1.0525 41 1 5.8214 3.6529 0.3976 42 1 5.6243 3.2358 -1.3349 RHF calculation, no. of doubly occupied orbitals= 52 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000072518068.mol2 42 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 06:07:41 Heat of formation + Delta-G solvation = 4.207691 kcal Electronic energy + Delta-G solvation = -21131.514457 eV Core-core repulsion = 18201.293827 eV Total energy + Delta-G solvation = -2930.220630 eV No. of doubly occupied orbitals = 52 Molecular weight (most abundant/longest-lived isotopes) = 291.135 amu Computer time = 0.51 seconds Orbital eigenvalues (eV) -42.03761 -38.10933 -36.37815 -34.62464 -34.04805 -31.75367 -30.30834 -29.25792 -27.85673 -26.47685 -24.90975 -23.66249 -23.04823 -21.40981 -20.85580 -19.59862 -17.44613 -17.21241 -16.90892 -16.85760 -16.31739 -16.12710 -15.88885 -15.16087 -14.98418 -14.78865 -14.35608 -14.05909 -13.92867 -13.72661 -13.37968 -13.26714 -13.01926 -12.94453 -12.71766 -12.66604 -12.57705 -12.44483 -12.33308 -12.08071 -11.92763 -11.67900 -11.51342 -11.39995 -11.15749 -10.70297 -10.33128 -9.47461 -8.68712 -8.56516 -8.38163 -6.15093 0.49029 0.50075 1.30436 1.38400 1.47762 1.72902 2.26959 2.66473 2.96104 3.00719 3.29435 3.61671 3.68502 3.86520 3.95045 4.03557 4.13700 4.19361 4.26166 4.34373 4.35719 4.39883 4.47731 4.54518 4.61932 4.68305 4.77514 4.78088 4.86251 4.95774 5.00861 5.05082 5.08253 5.14181 5.14766 5.26760 5.32618 5.38538 5.53313 5.58419 5.70294 5.83741 6.03292 6.17002 6.33212 7.03897 8.71108 Molecular weight = 291.14amu Principal moments of inertia in cm(-1) A = 0.019292 B = 0.004076 C = 0.003855 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1451.003330 B = 6868.520332 C = 7261.932670 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.149 4.149 2 C -0.089 4.089 3 C -0.108 4.108 4 C -0.113 4.113 5 C -0.148 4.148 6 C -0.098 4.098 7 C -0.157 4.157 8 C 0.079 3.921 9 N -0.473 5.473 10 C 0.046 3.954 11 C -0.116 4.116 12 C -0.082 4.082 13 S -0.199 6.199 14 C -0.537 4.537 15 H 0.073 0.927 16 C 0.016 3.984 17 N -0.908 5.908 18 Si 0.993 3.007 19 H -0.267 1.267 20 H -0.274 1.274 21 H -0.262 1.262 22 C 0.035 3.965 23 C -0.077 4.077 24 H 0.067 0.933 25 H 0.062 0.938 26 H 0.053 0.947 27 H 0.076 0.924 28 H 0.066 0.934 29 H 0.140 0.860 30 H 0.144 0.856 31 H 0.139 0.861 32 H 0.094 0.906 33 H 0.093 0.907 34 H 0.060 0.940 35 H 0.059 0.941 36 H 0.064 0.936 37 H 0.065 0.935 38 H 0.271 0.729 39 H 0.114 0.886 40 H 0.058 0.942 41 H 0.090 0.910 42 H 0.099 0.901 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 1.043 7.150 -18.096 19.486 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.206 4.206 2 C -0.126 4.126 3 C -0.111 4.111 4 C -0.131 4.131 5 C -0.167 4.167 6 C -0.116 4.116 7 C -0.160 4.160 8 C -0.019 4.019 9 N -0.186 5.186 10 C -0.082 4.082 11 C -0.156 4.156 12 C -0.232 4.232 13 S 0.029 5.971 14 C -0.685 4.685 15 H 0.091 0.909 16 C -0.188 4.188 17 N -0.545 5.545 18 Si 0.815 3.185 19 H -0.192 1.192 20 H -0.199 1.199 21 H -0.186 1.186 22 C -0.091 4.091 23 C -0.115 4.115 24 H 0.086 0.914 25 H 0.081 0.919 26 H 0.072 0.928 27 H 0.095 0.905 28 H 0.085 0.915 29 H 0.158 0.842 30 H 0.162 0.838 31 H 0.157 0.843 32 H 0.112 0.888 33 H 0.112 0.888 34 H 0.079 0.921 35 H 0.078 0.922 36 H 0.082 0.918 37 H 0.083 0.917 38 H 0.080 0.920 39 H 0.132 0.868 40 H 0.077 0.923 41 H 0.109 0.891 42 H 0.117 0.883 Dipole moment (debyes) X Y Z Total from point charges 1.011 8.015 -18.014 19.743 hybrid contribution -0.090 -1.810 1.081 2.110 sum 0.920 6.205 -16.933 18.058 Atomic orbital electron populations 1.21817 0.94324 1.02375 1.02058 1.20691 0.97165 0.92847 1.01866 1.19496 0.90973 0.96619 1.03970 1.21188 1.00165 0.92225 0.99538 1.21299 0.95788 0.97023 1.02555 1.20658 0.92710 0.98814 0.99464 1.20869 0.97053 0.93138 1.04948 1.19649 0.91773 0.92418 0.98041 1.60863 1.01704 1.06784 1.49250 1.22603 1.04464 0.92521 0.88582 1.21836 1.01893 0.96455 0.95375 1.23080 1.02706 1.00617 0.96753 1.84728 1.91888 1.15595 1.04854 1.23031 1.55423 0.92089 0.97940 0.90870 1.26058 0.93914 1.02068 0.96806 1.70162 1.45999 1.29729 1.08601 0.85028 0.78548 0.77086 0.77833 1.19246 1.19942 1.18625 1.23453 0.91798 0.92594 1.01228 1.21309 0.90231 0.96370 1.03549 0.91362 0.91891 0.92816 0.90520 0.91543 0.84216 0.83825 0.84294 0.88760 0.88820 0.92120 0.92191 0.91757 0.91654 0.91989 0.86833 0.92345 0.89147 0.88318 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -3.30 8.58 71.98 0.62 -2.69 16 2 C -0.09 -2.31 4.37 29.85 0.13 -2.18 16 3 C -0.11 -2.99 4.79 -19.66 -0.09 -3.08 16 4 C -0.11 -2.85 8.97 22.21 0.20 -2.65 16 5 C -0.15 -3.40 10.06 22.30 0.22 -3.17 16 6 C -0.10 -2.27 10.03 22.21 0.22 -2.04 16 7 C -0.16 -3.98 6.23 -19.48 -0.12 -4.10 16 8 C 0.08 2.20 4.65 38.28 0.18 2.38 16 9 N -0.47 -12.10 5.29 -688.65 -3.64 -15.74 16 10 C 0.05 1.23 4.77 86.30 0.41 1.64 16 11 C -0.12 -3.88 3.81 30.59 0.12 -3.76 16 12 C -0.08 -3.32 5.63 71.98 0.41 -2.91 16 13 S -0.20 -10.75 21.44 -56.49 -1.21 -11.97 16 14 C -0.54 -31.20 9.50 67.95 0.65 -30.56 16 15 H 0.07 4.08 7.80 -2.91 -0.02 4.06 16 16 C 0.02 0.94 5.49 84.86 0.47 1.40 16 17 N -0.91 -55.31 13.22 21.65 0.29 -55.02 16 18 Si 0.99 44.03 29.55 68.60 2.03 46.06 16 19 H -0.27 -11.37 7.11 99.48 0.71 -10.66 16 20 H -0.27 -11.73 7.11 99.48 0.71 -11.02 16 21 H -0.26 -11.09 7.11 99.48 0.71 -10.39 16 22 C 0.03 0.74 6.70 86.65 0.58 1.32 16 23 C -0.08 -1.53 7.04 30.67 0.22 -1.32 16 24 H 0.07 1.31 7.72 -2.39 -0.02 1.29 16 25 H 0.06 1.30 8.14 -2.39 -0.02 1.28 16 26 H 0.05 1.26 7.31 -2.39 -0.02 1.24 16 27 H 0.08 1.87 7.57 -2.39 -0.02 1.85 16 28 H 0.07 1.98 5.09 -2.39 -0.01 1.97 16 29 H 0.14 3.05 5.89 -2.91 -0.02 3.03 16 30 H 0.14 2.51 8.06 -2.91 -0.02 2.49 16 31 H 0.14 2.47 8.06 -2.91 -0.02 2.45 16 32 H 0.09 2.48 4.80 -2.39 -0.01 2.47 16 33 H 0.09 2.23 8.12 -2.39 -0.02 2.21 16 34 H 0.06 2.08 6.39 -2.39 -0.02 2.06 16 35 H 0.06 2.23 5.63 -2.39 -0.01 2.21 16 36 H 0.06 2.55 7.82 -2.39 -0.02 2.53 16 37 H 0.06 2.57 8.14 -2.39 -0.02 2.55 16 38 H 0.27 15.31 8.31 -92.71 -0.77 14.53 16 39 H 0.11 1.90 8.14 -2.38 -0.02 1.88 16 40 H 0.06 1.37 6.03 -2.39 -0.01 1.35 16 41 H 0.09 1.57 8.14 -2.39 -0.02 1.55 16 42 H 0.10 1.64 8.14 -2.38 -0.02 1.62 16 Total: -1.00 -68.51 336.77 2.66 -65.84 By element: Atomic # 1 Polarization: 21.53 SS G_CDS: 1.01 Total: 22.54 kcal Atomic # 6 Polarization: -55.91 SS G_CDS: 4.20 Total: -51.71 kcal Atomic # 7 Polarization: -67.40 SS G_CDS: -3.36 Total: -70.76 kcal Atomic # 14 Polarization: 44.03 SS G_CDS: 2.03 Total: 46.06 kcal Atomic # 16 Polarization: -10.75 SS G_CDS: -1.21 Total: -11.97 kcal Total: -68.51 2.66 -65.84 kcal The number of atoms in the molecule is 42 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000072518068.mol2 42 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 70.052 kcal (2) G-P(sol) polarization free energy of solvation -68.508 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 1.543 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.664 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -65.844 kcal (6) G-S(sol) free energy of system = (1) + (5) 4.208 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.51 seconds