Wall clock time and date at job start Tue Mar 31 2020 06:21:27 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.31002 * 1 3 3 C 1.50705 * 119.99566 * 2 1 4 4 N 1.46898 * 109.46832 * 124.13826 * 3 2 1 5 5 C 1.46902 * 111.00469 * 300.57123 * 4 3 2 6 6 C 1.53003 * 109.46689 * 287.98629 * 5 4 3 7 7 C 1.52999 * 109.46842 * 179.27008 * 6 5 4 8 8 S 1.81001 * 109.46914 * 179.97438 * 7 6 5 9 9 C 1.76202 * 100.00033 * 179.97438 * 8 7 6 10 10 H 1.07998 * 119.99807 * 0.02562 * 9 8 7 11 11 C 1.38793 * 120.00028 * 179.97438 * 9 8 7 12 12 N 1.31630 * 120.00059 * 0.02562 * 11 9 8 13 13 Si 1.86805 * 120.00188 * 180.02562 * 11 9 8 14 14 H 1.48496 * 109.47174 * 89.99833 * 13 11 9 15 15 H 1.48500 * 109.46950 * 210.00405 * 13 11 9 16 16 H 1.48509 * 109.46564 * 329.99979 * 13 11 9 17 17 C 1.46903 * 110.99751 * 64.52341 * 4 3 2 18 18 C 1.50697 * 109.47166 * 66.04584 * 17 4 3 19 19 C 1.38238 * 120.00090 * 90.00042 * 18 17 4 20 20 C 1.38233 * 120.00182 * 179.97438 * 19 18 17 21 21 C 1.38240 * 119.99744 * 359.95578 * 20 19 18 22 22 C 1.38239 * 120.00053 * 0.27319 * 21 20 19 23 23 C 1.38230 * 119.99639 * 359.51624 * 22 21 20 24 24 H 1.08003 * 119.99199 * 179.97438 * 1 2 3 25 25 H 1.07994 * 120.00477 * 359.97438 * 1 2 3 26 26 H 1.07994 * 120.00477 * 180.02562 * 2 1 3 27 27 H 1.09002 * 109.47077 * 4.14292 * 3 2 1 28 28 H 1.08997 * 109.47365 * 244.13883 * 3 2 1 29 29 H 1.08999 * 109.47077 * 47.98067 * 5 4 3 30 30 H 1.08996 * 109.47521 * 167.98742 * 5 4 3 31 31 H 1.09007 * 109.47036 * 299.27067 * 6 5 4 32 32 H 1.09002 * 109.47487 * 59.26711 * 6 5 4 33 33 H 1.08999 * 109.46915 * 299.99380 * 7 6 5 34 34 H 1.08997 * 109.47383 * 60.00096 * 7 6 5 35 35 H 0.97008 * 119.99852 * 180.02562 * 12 11 9 36 36 H 1.09004 * 109.47228 * 306.04078 * 17 4 3 37 37 H 1.09004 * 109.47122 * 186.04452 * 17 4 3 38 38 H 1.08001 * 120.00193 * 359.97402 * 19 18 17 39 39 H 1.08000 * 120.00229 * 179.97438 * 20 19 18 40 40 H 1.08000 * 119.99586 * 180.02562 * 21 20 19 41 41 H 1.07998 * 119.99489 * 179.72915 * 22 21 20 42 42 H 1.08000 * 119.99801 * 180.25122 * 23 22 21 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.3100 0.0000 0.0000 3 6 2.0634 1.3052 0.0000 4 7 2.9814 1.3406 1.1463 5 6 2.2482 1.2072 2.4123 6 6 1.4754 2.4976 2.6925 7 6 0.6973 2.3520 4.0018 8 16 -0.2162 3.8789 4.3337 9 6 -0.9976 3.4441 5.8519 10 1 -0.8305 2.4691 6.2854 11 6 -1.8270 4.3549 6.4913 12 7 -2.0303 5.5434 5.9633 13 14 -2.6549 3.8942 8.1013 14 1 -1.7762 4.2746 9.2363 15 1 -3.9497 4.6123 8.2153 16 1 -2.8969 2.4293 8.1319 17 6 4.0153 0.3042 1.0250 18 6 4.9016 0.6142 -0.1537 19 6 6.0304 1.3938 0.0165 20 6 6.8437 1.6778 -1.0646 21 6 6.5286 1.1814 -2.3158 22 6 5.3972 0.4058 -2.4868 23 6 4.5864 0.1182 -1.4049 24 1 -0.5399 -0.9354 -0.0004 25 1 -0.5400 0.9352 0.0004 26 1 1.8501 -0.9352 -0.0004 27 1 1.3574 2.1323 0.0742 28 1 2.6333 1.3958 -0.9247 29 1 1.5496 0.3735 2.3414 30 1 2.9532 1.0226 3.2228 31 1 2.1751 3.3293 2.7762 32 1 0.7795 2.6892 1.8757 33 1 -0.0024 1.5205 3.9180 34 1 1.3932 2.1606 4.8186 35 1 -2.6097 6.1801 6.4104 36 1 3.5414 -0.6664 0.8780 37 1 4.6154 0.2813 1.9347 38 1 6.2770 1.7810 0.9941 39 1 7.7254 2.2872 -0.9318 40 1 7.1642 1.4030 -3.1603 41 1 5.1487 0.0217 -3.4651 42 1 3.7046 -0.4911 -1.5377 RHF calculation, no. of doubly occupied orbitals= 52 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000074980922.mol2 42 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 06:21:27 Heat of formation + Delta-G solvation = 35.799208 kcal Electronic energy + Delta-G solvation = -20007.373452 eV Core-core repulsion = 17078.522733 eV Total energy + Delta-G solvation = -2928.850719 eV No. of doubly occupied orbitals = 52 Molecular weight (most abundant/longest-lived isotopes) = 291.135 amu Computer time = 2.36 seconds Orbital eigenvalues (eV) -39.80048 -38.00478 -33.62757 -33.21754 -32.40032 -31.05061 -30.82835 -26.88083 -26.42434 -25.44826 -23.04294 -22.66366 -21.40411 -20.88294 -19.25360 -17.43127 -16.92860 -16.09894 -15.95578 -15.41470 -14.99115 -14.83103 -14.77739 -14.20495 -14.02695 -13.64388 -13.53313 -13.03919 -12.89863 -12.74143 -12.11255 -12.03348 -11.75100 -11.56470 -11.43205 -11.29334 -11.10561 -11.07123 -11.04326 -10.75632 -10.58630 -10.23075 -9.52728 -9.47077 -9.04408 -9.03258 -8.92037 -8.28235 -8.24160 -6.49013 -6.20100 -3.89797 1.17531 1.25765 2.18150 3.23078 3.23672 3.30443 3.50343 3.65600 4.17285 4.25981 4.62719 4.68138 4.82935 4.85175 4.95415 5.00669 5.14394 5.15793 5.26345 5.32420 5.36221 5.42306 5.50575 5.57478 5.70514 5.81188 5.83027 5.85223 5.89268 5.93193 5.96010 6.13472 6.29502 6.35468 6.39799 6.49142 6.52138 6.59484 6.66181 6.81186 6.84790 7.06283 7.14251 7.63060 8.39315 9.26146 10.88066 Molecular weight = 291.14amu Principal moments of inertia in cm(-1) A = 0.029267 B = 0.002724 C = 0.002613 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 956.474103 B =10277.660516 C =10713.043789 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.171 4.171 2 C -0.198 4.198 3 C 0.073 3.927 4 N -0.523 5.523 5 C 0.057 3.943 6 C -0.090 4.090 7 C -0.111 4.111 8 S -0.133 6.133 9 C -0.515 4.515 10 H 0.071 0.929 11 C 0.070 3.930 12 N -0.870 5.870 13 Si 0.918 3.082 14 H -0.277 1.277 15 H -0.282 1.282 16 H -0.272 1.272 17 C 0.088 3.912 18 C -0.072 4.072 19 C -0.098 4.098 20 C -0.122 4.122 21 C -0.124 4.124 22 C -0.123 4.123 23 C -0.115 4.115 24 H 0.094 0.906 25 H 0.101 0.899 26 H 0.103 0.897 27 H 0.085 0.915 28 H 0.083 0.917 29 H 0.040 0.960 30 H 0.070 0.930 31 H 0.072 0.928 32 H 0.063 0.937 33 H 0.057 0.943 34 H 0.059 0.941 35 H 0.267 0.733 36 H 0.044 0.956 37 H 0.082 0.918 38 H 0.123 0.877 39 H 0.120 0.880 40 H 0.118 0.882 41 H 0.119 0.881 42 H 0.118 0.882 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 14.428 -12.035 -15.729 24.503 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.209 4.209 2 C -0.218 4.218 3 C -0.054 4.054 4 N -0.245 5.245 5 C -0.071 4.071 6 C -0.128 4.128 7 C -0.261 4.261 8 S 0.096 5.904 9 C -0.663 4.663 10 H 0.090 0.910 11 C -0.138 4.138 12 N -0.506 5.506 13 Si 0.744 3.256 14 H -0.203 1.203 15 H -0.208 1.208 16 H -0.197 1.197 17 C -0.039 4.039 18 C -0.073 4.073 19 C -0.117 4.117 20 C -0.140 4.140 21 C -0.142 4.142 22 C -0.141 4.141 23 C -0.133 4.133 24 H 0.112 0.888 25 H 0.120 0.880 26 H 0.121 0.879 27 H 0.103 0.897 28 H 0.102 0.898 29 H 0.058 0.942 30 H 0.089 0.911 31 H 0.091 0.909 32 H 0.082 0.918 33 H 0.076 0.924 34 H 0.077 0.923 35 H 0.076 0.924 36 H 0.062 0.938 37 H 0.100 0.900 38 H 0.141 0.859 39 H 0.138 0.862 40 H 0.136 0.864 41 H 0.137 0.863 42 H 0.136 0.864 Dipole moment (debyes) X Y Z Total from point charges 14.514 -10.419 -16.272 24.165 hybrid contribution -0.946 -2.233 1.713 2.969 sum 13.568 -12.652 -14.558 23.582 Atomic orbital electron populations 1.23940 0.95949 1.02126 0.98867 1.23555 0.96737 0.99755 1.01737 1.21502 0.94789 0.94571 0.94539 1.62296 1.13296 1.46509 1.02413 1.22232 0.96511 0.98166 0.90229 1.21216 0.98257 0.96826 0.96533 1.23225 1.01058 1.03099 0.98682 1.84633 1.57884 1.16611 1.31310 1.22690 1.32733 1.03317 1.07593 0.91040 1.25011 0.95984 0.94585 0.98249 1.70029 1.36214 1.05579 1.38739 0.86180 0.78640 0.78612 0.82173 1.20279 1.20776 1.19731 1.21091 0.92919 0.93513 0.96422 1.19775 0.95439 0.97512 0.94538 1.21067 0.94310 0.97144 0.99162 1.21160 0.99803 1.00058 0.92969 1.21132 0.97426 0.98384 0.97294 1.21098 0.95300 0.99117 0.98615 1.21081 0.99430 1.00330 0.92471 0.88800 0.88029 0.87907 0.89678 0.89843 0.94162 0.91132 0.90935 0.91816 0.92430 0.92266 0.92350 0.93751 0.89971 0.85884 0.86180 0.86388 0.86333 0.86381 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.17 -1.86 14.32 29.01 0.42 -1.45 16 2 C -0.20 -2.12 7.35 -36.02 -0.26 -2.38 16 3 C 0.07 0.85 5.32 -4.97 -0.03 0.83 16 4 N -0.52 -6.40 4.66 -237.51 -1.11 -7.50 16 5 C 0.06 0.78 4.82 -3.82 -0.02 0.76 16 6 C -0.09 -1.50 5.28 -26.73 -0.14 -1.64 16 7 C -0.11 -2.28 5.67 37.16 0.21 -2.07 16 8 S -0.13 -3.52 21.44 -107.50 -2.30 -5.83 16 9 C -0.52 -14.94 9.50 30.94 0.29 -14.64 16 10 H 0.07 2.01 7.80 -52.49 -0.41 1.60 16 11 C 0.07 2.03 5.49 -17.43 -0.10 1.93 16 12 N -0.87 -26.25 13.22 55.49 0.73 -25.52 16 13 Si 0.92 21.73 29.55 -169.99 -5.02 16.70 16 14 H -0.28 -6.43 7.11 56.52 0.40 -6.03 16 15 H -0.28 -6.54 7.11 56.52 0.40 -6.14 16 16 H -0.27 -6.31 7.11 56.52 0.40 -5.91 16 17 C 0.09 0.91 4.96 -4.98 -0.02 0.89 16 18 C -0.07 -0.74 4.89 -104.63 -0.51 -1.25 16 19 C -0.10 -0.99 9.70 -39.58 -0.38 -1.37 16 20 C -0.12 -1.10 10.05 -39.58 -0.40 -1.50 16 21 C -0.12 -1.06 10.05 -39.58 -0.40 -1.46 16 22 C -0.12 -1.07 10.05 -39.58 -0.40 -1.47 16 23 C -0.11 -1.08 7.90 -39.59 -0.31 -1.39 16 24 H 0.09 0.92 8.06 -52.48 -0.42 0.49 16 25 H 0.10 1.17 7.84 -52.49 -0.41 0.75 16 26 H 0.10 1.01 6.81 -52.49 -0.36 0.65 16 27 H 0.08 1.09 6.36 -51.93 -0.33 0.76 16 28 H 0.08 0.93 5.85 -51.93 -0.30 0.63 16 29 H 0.04 0.55 6.69 -51.93 -0.35 0.21 16 30 H 0.07 0.93 7.81 -51.93 -0.41 0.52 16 31 H 0.07 1.28 8.14 -51.93 -0.42 0.85 16 32 H 0.06 1.09 6.75 -51.93 -0.35 0.73 16 33 H 0.06 1.17 8.14 -51.92 -0.42 0.75 16 34 H 0.06 1.20 8.14 -51.92 -0.42 0.78 16 35 H 0.27 7.49 8.31 -40.82 -0.34 7.15 16 36 H 0.04 0.44 6.30 -51.93 -0.33 0.11 16 37 H 0.08 0.82 7.80 -51.93 -0.41 0.41 16 38 H 0.12 1.15 8.06 -52.49 -0.42 0.72 16 39 H 0.12 0.86 8.06 -52.49 -0.42 0.44 16 40 H 0.12 0.77 8.06 -52.49 -0.42 0.34 16 41 H 0.12 0.80 8.06 -52.49 -0.42 0.38 16 42 H 0.12 1.00 7.92 -52.49 -0.42 0.59 16 LS Contribution 356.50 15.07 5.37 5.37 Total: -1.00 -31.23 356.50 -10.96 -42.19 By element: Atomic # 1 Polarization: 7.38 SS G_CDS: -6.58 Total: 0.80 kcal Atomic # 6 Polarization: -24.17 SS G_CDS: -2.05 Total: -26.22 kcal Atomic # 7 Polarization: -32.65 SS G_CDS: -0.37 Total: -33.02 kcal Atomic # 14 Polarization: 21.73 SS G_CDS: -5.02 Total: 16.70 kcal Atomic # 16 Polarization: -3.52 SS G_CDS: -2.30 Total: -5.83 kcal Total LS contribution 5.37 Total: 5.37 kcal Total: -31.23 -10.96 -42.19 kcal The number of atoms in the molecule is 42 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000074980922.mol2 42 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 77.992 kcal (2) G-P(sol) polarization free energy of solvation -31.231 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 46.762 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -10.962 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -42.193 kcal (6) G-S(sol) free energy of system = (1) + (5) 35.799 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 2.36 seconds