Wall clock time and date at job start Tue Mar 31 2020 06:21:27 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.31002 * 1 3 3 C 1.50705 * 119.99566 * 2 1 4 4 N 1.46898 * 109.46832 * 124.13826 * 3 2 1 5 5 C 1.46902 * 111.00469 * 300.57123 * 4 3 2 6 6 C 1.53003 * 109.46689 * 287.98629 * 5 4 3 7 7 C 1.52999 * 109.46842 * 179.27008 * 6 5 4 8 8 S 1.81001 * 109.46914 * 179.97438 * 7 6 5 9 9 C 1.76202 * 100.00033 * 179.97438 * 8 7 6 10 10 H 1.07998 * 119.99807 * 0.02562 * 9 8 7 11 11 C 1.38793 * 120.00028 * 179.97438 * 9 8 7 12 12 N 1.31630 * 120.00059 * 0.02562 * 11 9 8 13 13 Si 1.86805 * 120.00188 * 180.02562 * 11 9 8 14 14 H 1.48496 * 109.47174 * 89.99833 * 13 11 9 15 15 H 1.48500 * 109.46950 * 210.00405 * 13 11 9 16 16 H 1.48509 * 109.46564 * 329.99979 * 13 11 9 17 17 C 1.46903 * 110.99751 * 64.52341 * 4 3 2 18 18 C 1.50697 * 109.47166 * 66.04584 * 17 4 3 19 19 C 1.38238 * 120.00090 * 90.00042 * 18 17 4 20 20 C 1.38233 * 120.00182 * 179.97438 * 19 18 17 21 21 C 1.38240 * 119.99744 * 359.95578 * 20 19 18 22 22 C 1.38239 * 120.00053 * 0.27319 * 21 20 19 23 23 C 1.38230 * 119.99639 * 359.51624 * 22 21 20 24 24 H 1.08003 * 119.99199 * 179.97438 * 1 2 3 25 25 H 1.07994 * 120.00477 * 359.97438 * 1 2 3 26 26 H 1.07994 * 120.00477 * 180.02562 * 2 1 3 27 27 H 1.09002 * 109.47077 * 4.14292 * 3 2 1 28 28 H 1.08997 * 109.47365 * 244.13883 * 3 2 1 29 29 H 1.08999 * 109.47077 * 47.98067 * 5 4 3 30 30 H 1.08996 * 109.47521 * 167.98742 * 5 4 3 31 31 H 1.09007 * 109.47036 * 299.27067 * 6 5 4 32 32 H 1.09002 * 109.47487 * 59.26711 * 6 5 4 33 33 H 1.08999 * 109.46915 * 299.99380 * 7 6 5 34 34 H 1.08997 * 109.47383 * 60.00096 * 7 6 5 35 35 H 0.97008 * 119.99852 * 180.02562 * 12 11 9 36 36 H 1.09004 * 109.47228 * 306.04078 * 17 4 3 37 37 H 1.09004 * 109.47122 * 186.04452 * 17 4 3 38 38 H 1.08001 * 120.00193 * 359.97402 * 19 18 17 39 39 H 1.08000 * 120.00229 * 179.97438 * 20 19 18 40 40 H 1.08000 * 119.99586 * 180.02562 * 21 20 19 41 41 H 1.07998 * 119.99489 * 179.72915 * 22 21 20 42 42 H 1.08000 * 119.99801 * 180.25122 * 23 22 21 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.3100 0.0000 0.0000 3 6 2.0634 1.3052 0.0000 4 7 2.9814 1.3406 1.1463 5 6 2.2482 1.2072 2.4123 6 6 1.4754 2.4976 2.6925 7 6 0.6973 2.3520 4.0018 8 16 -0.2162 3.8789 4.3337 9 6 -0.9976 3.4441 5.8519 10 1 -0.8305 2.4691 6.2854 11 6 -1.8270 4.3549 6.4913 12 7 -2.0303 5.5434 5.9633 13 14 -2.6549 3.8942 8.1013 14 1 -1.7762 4.2746 9.2363 15 1 -3.9497 4.6123 8.2153 16 1 -2.8969 2.4293 8.1319 17 6 4.0153 0.3042 1.0250 18 6 4.9016 0.6142 -0.1537 19 6 6.0304 1.3938 0.0165 20 6 6.8437 1.6778 -1.0646 21 6 6.5286 1.1814 -2.3158 22 6 5.3972 0.4058 -2.4868 23 6 4.5864 0.1182 -1.4049 24 1 -0.5399 -0.9354 -0.0004 25 1 -0.5400 0.9352 0.0004 26 1 1.8501 -0.9352 -0.0004 27 1 1.3574 2.1323 0.0742 28 1 2.6333 1.3958 -0.9247 29 1 1.5496 0.3735 2.3414 30 1 2.9532 1.0226 3.2228 31 1 2.1751 3.3293 2.7762 32 1 0.7795 2.6892 1.8757 33 1 -0.0024 1.5205 3.9180 34 1 1.3932 2.1606 4.8186 35 1 -2.6097 6.1801 6.4104 36 1 3.5414 -0.6664 0.8780 37 1 4.6154 0.2813 1.9347 38 1 6.2770 1.7810 0.9941 39 1 7.7254 2.2872 -0.9318 40 1 7.1642 1.4030 -3.1603 41 1 5.1487 0.0217 -3.4651 42 1 3.7046 -0.4911 -1.5377 RHF calculation, no. of doubly occupied orbitals= 52 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000074980922.mol2 42 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 06:21:27 Heat of formation + Delta-G solvation = 19.480714 kcal Electronic energy + Delta-G solvation = -20008.081075 eV Core-core repulsion = 17078.522733 eV Total energy + Delta-G solvation = -2929.558342 eV No. of doubly occupied orbitals = 52 Molecular weight (most abundant/longest-lived isotopes) = 291.135 amu Computer time = 0.52 seconds Orbital eigenvalues (eV) -40.57552 -38.89061 -34.86701 -34.57833 -34.09853 -31.77321 -31.72003 -28.01235 -27.73917 -27.24110 -24.14745 -23.36666 -22.33377 -21.93686 -20.18555 -19.53360 -17.62451 -17.05244 -17.03483 -16.89369 -16.19601 -16.02458 -15.79277 -15.74795 -15.15435 -14.90961 -14.44485 -14.18666 -13.94913 -13.61646 -13.40900 -13.27473 -13.07351 -12.90141 -12.85365 -12.56315 -12.47911 -12.37448 -12.28076 -11.86810 -11.78565 -11.57198 -11.31102 -11.13845 -10.35826 -10.30718 -9.73313 -9.64793 -9.19872 -8.65988 -8.36846 -6.13035 0.47589 0.57226 1.31107 1.32382 1.39340 1.48632 1.75572 2.28806 2.79391 2.97212 3.23495 3.35999 3.86621 3.91350 3.97127 4.07614 4.15937 4.21295 4.24963 4.31156 4.36485 4.47664 4.52889 4.56616 4.69185 4.73797 4.78460 4.81782 4.85481 4.94280 5.07753 5.17498 5.19032 5.23068 5.34120 5.39926 5.61539 5.66103 5.68793 5.72281 5.77936 6.10676 6.14468 6.18544 6.20347 7.05206 8.72599 Molecular weight = 291.14amu Principal moments of inertia in cm(-1) A = 0.029267 B = 0.002724 C = 0.002613 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 956.474103 B =10277.660516 C =10713.043789 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.178 4.178 2 C -0.193 4.193 3 C 0.076 3.924 4 N -0.531 5.531 5 C 0.070 3.930 6 C -0.077 4.077 7 C -0.085 4.085 8 S -0.199 6.199 9 C -0.537 4.537 10 H 0.072 0.928 11 C 0.014 3.986 12 N -0.908 5.908 13 Si 0.994 3.006 14 H -0.267 1.267 15 H -0.274 1.274 16 H -0.263 1.263 17 C 0.091 3.909 18 C -0.085 4.085 19 C -0.115 4.115 20 C -0.131 4.131 21 C -0.129 4.129 22 C -0.129 4.129 23 C -0.122 4.122 24 H 0.107 0.893 25 H 0.090 0.910 26 H 0.118 0.882 27 H 0.068 0.932 28 H 0.089 0.911 29 H 0.043 0.957 30 H 0.079 0.921 31 H 0.062 0.938 32 H 0.058 0.942 33 H 0.059 0.941 34 H 0.062 0.938 35 H 0.271 0.729 36 H 0.053 0.947 37 H 0.086 0.914 38 H 0.123 0.877 39 H 0.135 0.865 40 H 0.139 0.861 41 H 0.138 0.862 42 H 0.126 0.874 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 15.108 -13.699 -15.885 25.850 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.216 4.216 2 C -0.213 4.213 3 C -0.052 4.052 4 N -0.253 5.253 5 C -0.060 4.060 6 C -0.116 4.116 7 C -0.234 4.234 8 S 0.030 5.970 9 C -0.685 4.685 10 H 0.090 0.910 11 C -0.191 4.191 12 N -0.544 5.544 13 Si 0.816 3.184 14 H -0.192 1.192 15 H -0.199 1.199 16 H -0.187 1.187 17 C -0.035 4.035 18 C -0.086 4.086 19 C -0.133 4.133 20 C -0.148 4.148 21 C -0.147 4.147 22 C -0.147 4.147 23 C -0.140 4.140 24 H 0.125 0.875 25 H 0.108 0.892 26 H 0.135 0.865 27 H 0.086 0.914 28 H 0.107 0.893 29 H 0.061 0.939 30 H 0.097 0.903 31 H 0.081 0.919 32 H 0.076 0.924 33 H 0.078 0.922 34 H 0.081 0.919 35 H 0.080 0.920 36 H 0.071 0.929 37 H 0.104 0.896 38 H 0.141 0.859 39 H 0.153 0.847 40 H 0.157 0.843 41 H 0.156 0.844 42 H 0.144 0.856 Dipole moment (debyes) X Y Z Total from point charges 15.206 -12.088 -16.442 25.449 hybrid contribution -1.071 -1.719 1.650 2.612 sum 14.135 -13.807 -14.792 24.683 Atomic orbital electron populations 1.24021 0.96208 1.02275 0.99137 1.23552 0.96579 0.99727 1.01423 1.21440 0.94552 0.94606 0.94568 1.62213 1.13506 1.47805 1.01801 1.22008 0.96517 0.95964 0.91471 1.21086 0.97779 0.98466 0.94291 1.23133 1.00415 0.99290 1.00597 1.84669 1.59328 1.21697 1.31355 1.23030 1.33425 1.03611 1.08385 0.90962 1.26079 0.96430 0.94322 1.02230 1.70164 1.36944 1.06765 1.40573 0.85016 0.77611 0.78734 0.77043 1.19241 1.19900 1.18708 1.21094 0.92353 0.93179 0.96919 1.19814 0.95689 0.98277 0.94802 1.21225 0.94786 0.97618 0.99688 1.21420 1.00229 1.00197 0.93000 1.21454 0.97620 0.97824 0.97793 1.21401 0.95138 0.98862 0.99333 1.21236 0.99912 1.00459 0.92421 0.87472 0.89190 0.86462 0.91380 0.89294 0.93863 0.90256 0.91903 0.92364 0.92193 0.91901 0.91985 0.92865 0.89610 0.85857 0.84668 0.84324 0.84426 0.85592 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.18 -3.71 14.32 67.78 0.97 -2.74 16 2 C -0.19 -3.84 7.35 25.65 0.19 -3.65 16 3 C 0.08 1.69 5.32 85.56 0.45 2.15 16 4 N -0.53 -12.39 4.66 -905.35 -4.22 -16.61 16 5 C 0.07 1.81 4.82 86.30 0.42 2.23 16 6 C -0.08 -2.58 5.28 30.60 0.16 -2.42 16 7 C -0.08 -3.48 5.67 71.98 0.41 -3.07 16 8 S -0.20 -10.82 21.44 -56.49 -1.21 -12.03 16 9 C -0.54 -31.43 9.50 67.95 0.65 -30.79 16 10 H 0.07 4.07 7.80 -2.91 -0.02 4.05 16 11 C 0.01 0.82 5.49 84.86 0.47 1.28 16 12 N -0.91 -55.52 13.22 21.65 0.29 -55.23 16 13 Si 0.99 44.33 29.55 68.60 2.03 46.36 16 14 H -0.27 -11.44 7.11 99.48 0.71 -10.73 16 15 H -0.27 -11.76 7.11 99.48 0.71 -11.05 16 16 H -0.26 -11.21 7.11 99.48 0.71 -10.50 16 17 C 0.09 1.76 4.96 85.56 0.42 2.18 16 18 C -0.09 -1.64 4.89 -19.87 -0.10 -1.73 16 19 C -0.11 -2.19 9.70 22.27 0.22 -1.97 16 20 C -0.13 -2.17 10.05 22.27 0.22 -1.95 16 21 C -0.13 -1.95 10.05 22.27 0.22 -1.73 16 22 C -0.13 -1.99 10.05 22.27 0.22 -1.77 16 23 C -0.12 -2.09 7.90 22.27 0.18 -1.92 16 24 H 0.11 1.92 8.06 -2.91 -0.02 1.90 16 25 H 0.09 2.07 7.84 -2.91 -0.02 2.05 16 26 H 0.12 2.01 6.81 -2.91 -0.02 1.99 16 27 H 0.07 1.74 6.36 -2.39 -0.02 1.73 16 28 H 0.09 1.89 5.85 -2.39 -0.01 1.88 16 29 H 0.04 1.11 6.69 -2.39 -0.02 1.10 16 30 H 0.08 1.94 7.81 -2.39 -0.02 1.92 16 31 H 0.06 2.22 8.14 -2.38 -0.02 2.20 16 32 H 0.06 2.01 6.75 -2.39 -0.02 1.99 16 33 H 0.06 2.42 8.14 -2.40 -0.02 2.40 16 34 H 0.06 2.52 8.14 -2.40 -0.02 2.50 16 35 H 0.27 15.36 8.31 -92.70 -0.77 14.59 16 36 H 0.05 0.93 6.30 -2.38 -0.02 0.92 16 37 H 0.09 1.58 7.80 -2.39 -0.02 1.56 16 38 H 0.12 2.23 8.06 -2.91 -0.02 2.21 16 39 H 0.14 1.72 8.06 -2.91 -0.02 1.70 16 40 H 0.14 1.45 8.06 -2.91 -0.02 1.43 16 41 H 0.14 1.52 8.06 -2.91 -0.02 1.49 16 42 H 0.13 1.89 7.92 -2.91 -0.02 1.87 16 Total: -1.00 -67.16 356.50 2.96 -64.20 By element: Atomic # 1 Polarization: 18.22 SS G_CDS: 0.97 Total: 19.19 kcal Atomic # 6 Polarization: -50.99 SS G_CDS: 5.10 Total: -45.88 kcal Atomic # 7 Polarization: -67.91 SS G_CDS: -3.93 Total: -71.84 kcal Atomic # 14 Polarization: 44.33 SS G_CDS: 2.03 Total: 46.36 kcal Atomic # 16 Polarization: -10.82 SS G_CDS: -1.21 Total: -12.03 kcal Total: -67.16 2.96 -64.20 kcal The number of atoms in the molecule is 42 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000074980922.mol2 42 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 83.684 kcal (2) G-P(sol) polarization free energy of solvation -67.164 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 16.521 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.960 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -64.204 kcal (6) G-S(sol) free energy of system = (1) + (5) 19.481 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.52 seconds