Wall clock time and date at job start Tue Mar 31 2020 07:08:43 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46905 * 1 3 3 C 1.46900 * 110.99817 * 2 1 4 4 C 1.52998 * 109.47098 * 284.53143 * 3 2 1 5 5 C 1.53002 * 109.47105 * 180.02562 * 4 3 2 6 6 S 1.81001 * 109.46916 * 179.97438 * 5 4 3 7 7 C 1.76206 * 99.99968 * 179.97438 * 6 5 4 8 8 H 1.08001 * 119.99582 * 0.02562 * 7 6 5 9 9 C 1.38794 * 120.00168 * 179.97438 * 7 6 5 10 10 N 1.31633 * 120.00221 * 179.97438 * 9 7 6 11 11 Si 1.86796 * 119.99951 * 0.02562 * 9 7 6 12 12 H 1.48503 * 109.47271 * 89.99628 * 11 9 7 13 13 H 1.48497 * 109.47232 * 209.99547 * 11 9 7 14 14 H 1.48500 * 109.47536 * 329.99825 * 11 9 7 15 15 C 1.46897 * 110.99827 * 123.95225 * 2 1 3 16 16 H 1.08998 * 110.26925 * 184.06133 * 15 2 1 17 17 C 1.54354 * 110.30387 * 306.23708 * 15 2 1 18 18 C 1.54342 * 102.39014 * 145.27381 * 17 15 2 19 19 C 1.51375 * 105.17204 * 333.65120 * 18 17 15 20 20 C 1.38491 * 130.39089 * 197.18940 * 19 18 17 21 21 C 1.38104 * 120.21802 * 180.02562 * 20 19 18 22 22 C 1.38262 * 119.93104 * 359.97438 * 21 20 19 23 23 C 1.38100 * 119.93334 * 359.97438 * 22 21 20 24 24 C 1.38212 * 109.75606 * 17.19249 * 19 18 17 25 25 H 1.09005 * 109.46941 * 67.19074 * 1 2 3 26 26 H 1.08996 * 109.46923 * 187.18823 * 1 2 3 27 27 H 1.08999 * 109.47406 * 307.19242 * 1 2 3 28 28 H 1.09006 * 109.47214 * 44.53016 * 3 2 1 29 29 H 1.08999 * 109.47030 * 164.53002 * 3 2 1 30 30 H 1.09006 * 109.46984 * 300.00014 * 4 3 2 31 31 H 1.08999 * 109.47295 * 60.00021 * 4 3 2 32 32 H 1.08994 * 109.46927 * 299.99266 * 5 4 3 33 33 H 1.08999 * 109.47325 * 59.99674 * 5 4 3 34 34 H 0.96998 * 119.99800 * 179.97438 * 10 9 7 35 35 H 1.09000 * 110.82196 * 263.50139 * 17 15 2 36 36 H 1.09000 * 110.82266 * 27.04721 * 17 15 2 37 37 H 1.09007 * 110.30321 * 214.73282 * 18 17 15 38 38 H 1.09003 * 110.30957 * 92.57811 * 18 17 15 39 39 H 1.08001 * 119.89378 * 359.97438 * 20 19 18 40 40 H 1.07998 * 120.03557 * 180.02562 * 21 20 19 41 41 H 1.07998 * 120.02951 * 179.97438 * 22 21 20 42 42 H 1.07999 * 119.89152 * 180.02562 * 23 22 21 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4690 0.0000 0.0000 3 6 1.9954 1.3714 0.0000 4 6 1.8403 1.9773 -1.3963 5 6 2.3891 3.4055 -1.3965 6 16 2.2063 4.1218 -3.0486 7 6 2.8969 5.7184 -2.7680 8 1 3.2695 5.9811 -1.7889 9 6 2.9630 6.6381 -3.8054 10 7 3.4784 7.8310 -3.5956 11 14 2.3192 6.1836 -5.4989 12 1 0.8832 6.5493 -5.5972 13 1 3.0890 6.9181 -6.5347 14 1 2.4732 4.7219 -5.7113 15 6 1.9954 -0.7659 1.1376 16 1 3.0829 -0.6986 1.1673 17 6 1.3885 -0.2479 2.4589 18 6 1.2652 -1.5391 3.2954 19 6 1.1416 -2.6572 2.2824 20 6 0.6971 -3.9601 2.4336 21 6 0.6724 -4.8162 1.3502 22 6 1.0920 -4.3718 0.1100 23 6 1.5346 -3.0725 -0.0429 24 6 1.5611 -2.2129 1.0427 25 1 -0.3633 0.3984 -0.9474 26 1 -0.3633 -1.0196 0.1286 27 1 -0.3634 0.6212 0.8186 28 1 1.4417 1.9732 0.7207 29 1 3.0503 1.3557 0.2741 30 1 2.3941 1.3755 -2.1171 31 1 0.7855 1.9930 -1.6705 32 1 1.8357 4.0074 -0.6759 33 1 3.4440 3.3894 -1.1226 34 1 3.5249 8.4736 -4.3207 35 1 2.0592 0.4634 2.9407 36 1 0.4085 0.1973 2.2868 37 1 0.3760 -1.4988 3.9245 38 1 2.1563 -1.6800 3.9072 39 1 0.3695 -4.3081 3.4021 40 1 0.3248 -5.8315 1.4714 41 1 1.0737 -5.0400 -0.7382 42 1 1.8618 -2.7260 -1.0120 RHF calculation, no. of doubly occupied orbitals= 52 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000074981530.mol2 42 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 07:08:43 Heat of formation + Delta-G solvation = 17.274673 kcal Electronic energy + Delta-G solvation = -20195.101742 eV Core-core repulsion = 17265.447738 eV Total energy + Delta-G solvation = -2929.654004 eV No. of doubly occupied orbitals = 52 Molecular weight (most abundant/longest-lived isotopes) = 291.135 amu Computer time = 1.77 seconds Orbital eigenvalues (eV) -40.69791 -37.78601 -35.06803 -32.69377 -32.41768 -31.02169 -29.10043 -27.46338 -26.71811 -25.62830 -23.66003 -22.86722 -21.33525 -20.79411 -19.87777 -17.46719 -16.73121 -16.38044 -15.46522 -15.34144 -15.20251 -14.97932 -14.69919 -14.15993 -13.82493 -13.79346 -13.40865 -12.93170 -12.88829 -12.76524 -12.35067 -12.05081 -11.97091 -11.73034 -11.69495 -11.46366 -11.32766 -11.17826 -11.03092 -10.98842 -10.84195 -10.34521 -10.10316 -9.75771 -8.98873 -8.97761 -8.75285 -8.53647 -8.34925 -6.91805 -6.26867 -3.98710 1.14150 1.22012 3.02530 3.31464 3.47357 3.51319 3.60405 3.88175 4.22606 4.31359 4.33488 4.71676 4.80869 4.83488 4.87457 4.92188 4.99879 5.11494 5.13823 5.21451 5.31534 5.36825 5.45224 5.45494 5.55428 5.56743 5.66874 5.69877 5.78877 5.80944 5.88306 5.94404 5.99069 6.00368 6.25196 6.28221 6.34065 6.45303 6.52845 6.68632 6.80643 7.01813 7.05415 7.97007 8.45726 9.19250 10.82663 Molecular weight = 291.14amu Principal moments of inertia in cm(-1) A = 0.036631 B = 0.002691 C = 0.002564 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 764.189654 B =10401.775125 C =10918.156034 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.021 3.979 2 N -0.530 5.530 3 C 0.059 3.941 4 C -0.094 4.094 5 C -0.082 4.082 6 S -0.216 6.216 7 C -0.501 4.501 8 H 0.087 0.913 9 C 0.091 3.909 10 N -0.883 5.883 11 Si 0.862 3.138 12 H -0.269 1.269 13 H -0.276 1.276 14 H -0.237 1.237 15 C 0.122 3.878 16 H 0.097 0.903 17 C -0.159 4.159 18 C -0.078 4.078 19 C -0.098 4.098 20 C -0.113 4.113 21 C -0.120 4.120 22 C -0.126 4.126 23 C -0.086 4.086 24 C -0.083 4.083 25 H 0.072 0.928 26 H 0.065 0.935 27 H 0.029 0.971 28 H 0.038 0.962 29 H 0.072 0.928 30 H 0.074 0.926 31 H 0.065 0.935 32 H 0.064 0.936 33 H 0.067 0.933 34 H 0.270 0.730 35 H 0.078 0.922 36 H 0.080 0.920 37 H 0.073 0.927 38 H 0.080 0.920 39 H 0.117 0.883 40 H 0.121 0.879 41 H 0.122 0.878 42 H 0.126 0.874 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -5.864 -23.930 12.868 27.796 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.127 4.127 2 N -0.252 5.252 3 C -0.070 4.070 4 C -0.133 4.133 5 C -0.231 4.231 6 S 0.012 5.988 7 C -0.649 4.649 8 H 0.105 0.895 9 C -0.117 4.117 10 N -0.520 5.520 11 Si 0.687 3.313 12 H -0.194 1.194 13 H -0.201 1.201 14 H -0.161 1.161 15 C 0.013 3.987 16 H 0.115 0.885 17 C -0.198 4.198 18 C -0.116 4.116 19 C -0.099 4.099 20 C -0.131 4.131 21 C -0.138 4.138 22 C -0.144 4.144 23 C -0.104 4.104 24 C -0.083 4.083 25 H 0.091 0.909 26 H 0.084 0.916 27 H 0.048 0.952 28 H 0.056 0.944 29 H 0.091 0.909 30 H 0.092 0.908 31 H 0.083 0.917 32 H 0.083 0.917 33 H 0.085 0.915 34 H 0.080 0.920 35 H 0.096 0.904 36 H 0.099 0.901 37 H 0.091 0.909 38 H 0.098 0.902 39 H 0.135 0.865 40 H 0.139 0.861 41 H 0.140 0.860 42 H 0.144 0.856 Dipole moment (debyes) X Y Z Total from point charges -6.081 -24.392 11.389 27.598 hybrid contribution 0.033 1.029 1.094 1.502 sum -6.048 -23.363 12.482 27.170 Atomic orbital electron populations 1.22467 0.87465 1.01494 1.01250 1.62097 1.08078 1.14176 1.40827 1.22202 0.99917 0.87173 0.97671 1.21285 1.01812 0.94147 0.96052 1.23017 1.02834 0.97295 0.99923 1.84168 1.82757 1.18088 1.13779 1.22133 1.45756 0.95759 1.01237 0.89464 1.24802 0.93912 0.94026 0.98991 1.69942 1.43514 1.05184 1.33341 0.86663 0.79661 0.81371 0.83614 1.19415 1.20144 1.16112 1.21308 0.99636 0.89288 0.88458 0.88507 1.23052 1.02576 0.97499 0.96629 1.20978 1.02328 0.91755 0.96503 1.20592 0.99012 0.94622 0.95661 1.20565 1.01039 0.92638 0.98890 1.21032 1.00429 0.99418 0.92954 1.21093 1.00030 0.95845 0.97447 1.20720 0.98433 0.92597 0.98633 1.20404 0.99117 0.95247 0.93531 0.90942 0.91611 0.95233 0.94399 0.90929 0.90769 0.91656 0.91708 0.91459 0.92009 0.90375 0.90128 0.90883 0.90191 0.86528 0.86136 0.85986 0.85573 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.02 0.23 8.54 60.07 0.51 0.75 16 2 N -0.53 -6.16 4.66 -235.02 -1.10 -7.26 16 3 C 0.06 0.75 4.56 -3.82 -0.02 0.74 16 4 C -0.09 -1.46 5.32 -26.73 -0.14 -1.60 16 5 C -0.08 -1.59 5.67 37.16 0.21 -1.37 16 6 S -0.22 -5.32 19.41 -107.50 -2.09 -7.40 16 7 C -0.50 -14.67 10.04 30.94 0.31 -14.36 16 8 H 0.09 2.71 8.03 -52.49 -0.42 2.29 16 9 C 0.09 2.68 5.50 -17.43 -0.10 2.58 16 10 N -0.88 -26.98 13.97 55.49 0.78 -26.20 16 11 Si 0.86 21.74 27.74 -169.99 -4.71 17.03 16 12 H -0.27 -6.70 7.11 56.52 0.40 -6.30 16 13 H -0.28 -6.74 7.11 56.52 0.40 -6.34 16 14 H -0.24 -5.87 6.74 56.52 0.38 -5.49 16 15 C 0.12 1.26 2.92 -67.83 -0.20 1.06 16 16 H 0.10 1.01 7.91 -51.93 -0.41 0.59 16 17 C -0.16 -1.41 5.96 -25.32 -0.15 -1.56 16 18 C -0.08 -0.63 6.77 -26.85 -0.18 -0.81 16 19 C -0.10 -0.94 6.14 -104.21 -0.64 -1.58 16 20 C -0.11 -0.99 10.04 -39.54 -0.40 -1.39 16 21 C -0.12 -1.01 10.05 -39.62 -0.40 -1.40 16 22 C -0.13 -1.13 10.05 -39.62 -0.40 -1.53 16 23 C -0.09 -0.88 9.89 -39.53 -0.39 -1.27 16 24 C -0.08 -0.86 4.31 -104.21 -0.45 -1.31 16 25 H 0.07 0.84 7.14 -51.93 -0.37 0.46 16 26 H 0.07 0.72 6.77 -51.93 -0.35 0.37 16 27 H 0.03 0.31 6.14 -51.93 -0.32 -0.01 16 28 H 0.04 0.47 7.78 -51.93 -0.40 0.07 16 29 H 0.07 0.89 7.79 -51.93 -0.40 0.49 16 30 H 0.07 1.20 8.14 -51.93 -0.42 0.78 16 31 H 0.06 1.03 7.07 -51.93 -0.37 0.66 16 32 H 0.06 1.26 8.14 -51.92 -0.42 0.84 16 33 H 0.07 1.31 8.14 -51.92 -0.42 0.88 16 34 H 0.27 7.65 8.31 -40.82 -0.34 7.31 16 35 H 0.08 0.64 8.14 -51.93 -0.42 0.22 16 36 H 0.08 0.76 5.60 -51.93 -0.29 0.47 16 37 H 0.07 0.53 8.14 -51.93 -0.42 0.10 16 38 H 0.08 0.58 8.14 -51.93 -0.42 0.15 16 39 H 0.12 0.80 8.06 -52.49 -0.42 0.38 16 40 H 0.12 0.74 8.06 -52.49 -0.42 0.32 16 41 H 0.12 0.86 8.06 -52.49 -0.42 0.44 16 42 H 0.13 1.30 8.06 -52.49 -0.42 0.88 16 LS Contribution 346.12 15.07 5.22 5.22 Total: -1.00 -31.07 346.12 -11.05 -42.13 By element: Atomic # 1 Polarization: 6.29 SS G_CDS: -6.72 Total: -0.43 kcal Atomic # 6 Polarization: -20.65 SS G_CDS: -2.42 Total: -23.07 kcal Atomic # 7 Polarization: -33.14 SS G_CDS: -0.32 Total: -33.46 kcal Atomic # 14 Polarization: 21.74 SS G_CDS: -4.71 Total: 17.03 kcal Atomic # 16 Polarization: -5.32 SS G_CDS: -2.09 Total: -7.40 kcal Total LS contribution 5.22 Total: 5.22 kcal Total: -31.07 -11.05 -42.13 kcal The number of atoms in the molecule is 42 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000074981530.mol2 42 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 59.401 kcal (2) G-P(sol) polarization free energy of solvation -31.072 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 28.328 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -11.054 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -42.126 kcal (6) G-S(sol) free energy of system = (1) + (5) 17.275 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.78 seconds