Wall clock time and date at job start Tue Mar 31 2020 07:08:37 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46905 * 1 3 3 C 1.46900 * 110.99817 * 2 1 4 4 C 1.52998 * 109.47098 * 284.53143 * 3 2 1 5 5 C 1.53002 * 109.47105 * 180.02562 * 4 3 2 6 6 S 1.81001 * 109.46916 * 179.97438 * 5 4 3 7 7 C 1.76206 * 99.99968 * 179.97438 * 6 5 4 8 8 H 1.08001 * 119.99582 * 0.02562 * 7 6 5 9 9 C 1.38794 * 120.00168 * 179.97438 * 7 6 5 10 10 N 1.31633 * 120.00221 * 179.97438 * 9 7 6 11 11 Si 1.86796 * 119.99951 * 0.02562 * 9 7 6 12 12 H 1.48503 * 109.47271 * 89.99628 * 11 9 7 13 13 H 1.48497 * 109.47232 * 209.99547 * 11 9 7 14 14 H 1.48500 * 109.47536 * 329.99825 * 11 9 7 15 15 C 1.46897 * 110.99827 * 123.95225 * 2 1 3 16 16 H 1.08998 * 110.26925 * 184.06133 * 15 2 1 17 17 C 1.54354 * 110.30387 * 306.23708 * 15 2 1 18 18 C 1.54342 * 102.39014 * 145.27381 * 17 15 2 19 19 C 1.51375 * 105.17204 * 333.65120 * 18 17 15 20 20 C 1.38491 * 130.39089 * 197.18940 * 19 18 17 21 21 C 1.38104 * 120.21802 * 180.02562 * 20 19 18 22 22 C 1.38262 * 119.93104 * 359.97438 * 21 20 19 23 23 C 1.38100 * 119.93334 * 359.97438 * 22 21 20 24 24 C 1.38212 * 109.75606 * 17.19249 * 19 18 17 25 25 H 1.09005 * 109.46941 * 67.19074 * 1 2 3 26 26 H 1.08996 * 109.46923 * 187.18823 * 1 2 3 27 27 H 1.08999 * 109.47406 * 307.19242 * 1 2 3 28 28 H 1.09006 * 109.47214 * 44.53016 * 3 2 1 29 29 H 1.08999 * 109.47030 * 164.53002 * 3 2 1 30 30 H 1.09006 * 109.46984 * 300.00014 * 4 3 2 31 31 H 1.08999 * 109.47295 * 60.00021 * 4 3 2 32 32 H 1.08994 * 109.46927 * 299.99266 * 5 4 3 33 33 H 1.08999 * 109.47325 * 59.99674 * 5 4 3 34 34 H 0.96998 * 119.99800 * 179.97438 * 10 9 7 35 35 H 1.09000 * 110.82196 * 263.50139 * 17 15 2 36 36 H 1.09000 * 110.82266 * 27.04721 * 17 15 2 37 37 H 1.09007 * 110.30321 * 214.73282 * 18 17 15 38 38 H 1.09003 * 110.30957 * 92.57811 * 18 17 15 39 39 H 1.08001 * 119.89378 * 359.97438 * 20 19 18 40 40 H 1.07998 * 120.03557 * 180.02562 * 21 20 19 41 41 H 1.07998 * 120.02951 * 179.97438 * 22 21 20 42 42 H 1.07999 * 119.89152 * 180.02562 * 23 22 21 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4690 0.0000 0.0000 3 6 1.9954 1.3714 0.0000 4 6 1.8403 1.9773 -1.3963 5 6 2.3891 3.4055 -1.3965 6 16 2.2063 4.1218 -3.0486 7 6 2.8969 5.7184 -2.7680 8 1 3.2695 5.9811 -1.7889 9 6 2.9630 6.6381 -3.8054 10 7 3.4784 7.8310 -3.5956 11 14 2.3192 6.1836 -5.4989 12 1 0.8832 6.5493 -5.5972 13 1 3.0890 6.9181 -6.5347 14 1 2.4732 4.7219 -5.7113 15 6 1.9954 -0.7659 1.1376 16 1 3.0829 -0.6986 1.1673 17 6 1.3885 -0.2479 2.4589 18 6 1.2652 -1.5391 3.2954 19 6 1.1416 -2.6572 2.2824 20 6 0.6971 -3.9601 2.4336 21 6 0.6724 -4.8162 1.3502 22 6 1.0920 -4.3718 0.1100 23 6 1.5346 -3.0725 -0.0429 24 6 1.5611 -2.2129 1.0427 25 1 -0.3633 0.3984 -0.9474 26 1 -0.3633 -1.0196 0.1286 27 1 -0.3634 0.6212 0.8186 28 1 1.4417 1.9732 0.7207 29 1 3.0503 1.3557 0.2741 30 1 2.3941 1.3755 -2.1171 31 1 0.7855 1.9930 -1.6705 32 1 1.8357 4.0074 -0.6759 33 1 3.4440 3.3894 -1.1226 34 1 3.5249 8.4736 -4.3207 35 1 2.0592 0.4634 2.9407 36 1 0.4085 0.1973 2.2868 37 1 0.3760 -1.4988 3.9245 38 1 2.1563 -1.6800 3.9072 39 1 0.3695 -4.3081 3.4021 40 1 0.3248 -5.8315 1.4714 41 1 1.0737 -5.0400 -0.7382 42 1 1.8618 -2.7260 -1.0120 RHF calculation, no. of doubly occupied orbitals= 52 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000074981530.mol2 42 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 07:08:37 Heat of formation + Delta-G solvation = 0.523247 kcal Electronic energy + Delta-G solvation = -20195.828138 eV Core-core repulsion = 17265.447738 eV Total energy + Delta-G solvation = -2930.380400 eV No. of doubly occupied orbitals = 52 Molecular weight (most abundant/longest-lived isotopes) = 291.135 amu Computer time = 3.29 seconds Orbital eigenvalues (eV) -41.42297 -38.63198 -35.93548 -34.68600 -33.80316 -31.78753 -29.77438 -28.31309 -28.09406 -27.57200 -24.67946 -23.59892 -22.32038 -21.63506 -20.70630 -19.61460 -17.46945 -17.27209 -17.08596 -16.45290 -16.36339 -16.04691 -15.81662 -15.21663 -14.96451 -14.89964 -14.77570 -14.09889 -13.85459 -13.62937 -13.61013 -13.38626 -13.15184 -12.93876 -12.75132 -12.65474 -12.63845 -12.39759 -12.18904 -11.94232 -11.86187 -11.64150 -11.62304 -11.39137 -11.16168 -10.55595 -9.66859 -9.43389 -9.24677 -8.98782 -8.52028 -6.23035 0.45999 0.53061 1.12891 1.31849 1.48216 1.74994 2.24986 2.68806 2.81892 2.86002 3.00132 3.51283 3.61515 3.93278 4.04331 4.18214 4.20728 4.22775 4.24107 4.29738 4.35634 4.41877 4.50127 4.60432 4.68890 4.71566 4.76175 4.80225 4.82699 4.89657 5.00223 5.05907 5.15240 5.17316 5.21545 5.29438 5.32423 5.59381 5.66765 5.69818 5.74986 6.08735 6.10004 6.12496 6.18691 6.92259 8.61080 Molecular weight = 291.14amu Principal moments of inertia in cm(-1) A = 0.036631 B = 0.002691 C = 0.002564 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 764.189654 B =10401.775125 C =10918.156034 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.026 3.974 2 N -0.537 5.537 3 C 0.069 3.931 4 C -0.081 4.081 5 C -0.068 4.068 6 S -0.223 6.223 7 C -0.521 4.521 8 H 0.051 0.949 9 C 0.037 3.963 10 N -0.923 5.923 11 Si 0.926 3.074 12 H -0.261 1.261 13 H -0.263 1.263 14 H -0.229 1.229 15 C 0.121 3.879 16 H 0.094 0.906 17 C -0.155 4.155 18 C -0.074 4.074 19 C -0.108 4.108 20 C -0.120 4.120 21 C -0.122 4.122 22 C -0.133 4.133 23 C -0.103 4.103 24 C -0.099 4.099 25 H 0.065 0.935 26 H 0.065 0.935 27 H 0.035 0.965 28 H 0.043 0.957 29 H 0.078 0.922 30 H 0.069 0.931 31 H 0.066 0.934 32 H 0.064 0.936 33 H 0.066 0.934 34 H 0.277 0.723 35 H 0.084 0.916 36 H 0.076 0.924 37 H 0.084 0.916 38 H 0.090 0.910 39 H 0.136 0.864 40 H 0.144 0.856 41 H 0.138 0.862 42 H 0.118 0.882 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -6.831 -26.038 13.242 30.000 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.122 4.122 2 N -0.259 5.259 3 C -0.060 4.060 4 C -0.120 4.120 5 C -0.217 4.217 6 S 0.005 5.995 7 C -0.669 4.669 8 H 0.069 0.931 9 C -0.168 4.168 10 N -0.561 5.561 11 Si 0.747 3.253 12 H -0.186 1.186 13 H -0.187 1.187 14 H -0.153 1.153 15 C 0.013 3.987 16 H 0.111 0.889 17 C -0.194 4.194 18 C -0.111 4.111 19 C -0.108 4.108 20 C -0.138 4.138 21 C -0.140 4.140 22 C -0.151 4.151 23 C -0.121 4.121 24 C -0.100 4.100 25 H 0.084 0.916 26 H 0.084 0.916 27 H 0.054 0.946 28 H 0.061 0.939 29 H 0.096 0.904 30 H 0.088 0.912 31 H 0.084 0.916 32 H 0.083 0.917 33 H 0.085 0.915 34 H 0.086 0.914 35 H 0.103 0.897 36 H 0.094 0.906 37 H 0.102 0.898 38 H 0.108 0.892 39 H 0.154 0.846 40 H 0.162 0.838 41 H 0.156 0.844 42 H 0.136 0.864 Dipole moment (debyes) X Y Z Total from point charges -7.046 -26.508 11.776 29.850 hybrid contribution 0.353 1.614 1.098 1.983 sum -6.694 -24.894 12.874 28.815 Atomic orbital electron populations 1.22413 0.87120 1.01583 1.01088 1.62011 1.08428 1.13367 1.42080 1.22013 1.00522 0.87875 0.95586 1.21158 1.01358 0.91503 0.97990 1.23071 1.03149 0.99143 0.96315 1.83886 1.82230 1.15298 1.18078 1.22343 1.45987 0.98569 0.99951 0.93116 1.25787 0.94004 0.93862 1.03137 1.70040 1.44666 1.06394 1.34996 0.85705 0.79380 0.81588 0.78627 1.18609 1.18738 1.15278 1.21332 0.99476 0.89314 0.88605 0.88853 1.23014 1.02268 0.98079 0.96007 1.20986 1.03308 0.90634 0.96220 1.20834 0.98941 0.95411 0.95648 1.20878 1.00536 0.92380 0.99965 1.21362 0.99623 1.00509 0.92506 1.21337 0.99671 0.95573 0.98492 1.20803 0.99419 0.93475 0.98415 1.20483 1.00083 0.95274 0.94152 0.91613 0.91581 0.94628 0.93853 0.90386 0.91232 0.91576 0.91725 0.91548 0.91410 0.89687 0.90583 0.89777 0.89213 0.84585 0.83809 0.84450 0.86438 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.03 0.54 8.54 127.69 1.09 1.63 16 2 N -0.54 -11.89 4.66 -897.48 -4.18 -16.07 16 3 C 0.07 1.67 4.56 86.30 0.39 2.06 16 4 C -0.08 -2.42 5.32 30.59 0.16 -2.26 16 5 C -0.07 -2.60 5.67 71.98 0.41 -2.19 16 6 S -0.22 -10.89 19.41 -56.49 -1.10 -11.99 16 7 C -0.52 -31.08 10.04 67.95 0.68 -30.40 16 8 H 0.05 3.28 8.03 -2.91 -0.02 3.26 16 9 C 0.04 2.18 5.50 84.86 0.47 2.65 16 10 N -0.92 -57.32 13.97 21.65 0.30 -57.02 16 11 Si 0.93 44.66 27.74 68.60 1.90 46.57 16 12 H -0.26 -12.22 7.11 99.48 0.71 -11.51 16 13 H -0.26 -11.99 7.11 99.48 0.71 -11.28 16 14 H -0.23 -10.69 6.74 99.48 0.67 -10.02 16 15 C 0.12 2.36 2.92 44.84 0.13 2.49 16 16 H 0.09 1.85 7.91 -2.39 -0.02 1.84 16 17 C -0.15 -2.49 5.96 31.51 0.19 -2.30 16 18 C -0.07 -1.04 6.77 30.52 0.21 -0.84 16 19 C -0.11 -1.88 6.14 -19.60 -0.12 -2.00 16 20 C -0.12 -1.82 10.04 22.30 0.22 -1.60 16 21 C -0.12 -1.77 10.05 22.24 0.22 -1.55 16 22 C -0.13 -2.19 10.05 22.24 0.22 -1.97 16 23 C -0.10 -2.05 9.89 22.30 0.22 -1.83 16 24 C -0.10 -1.98 4.31 -19.60 -0.08 -2.06 16 25 H 0.07 1.45 7.14 -2.38 -0.02 1.43 16 26 H 0.07 1.38 6.77 -2.39 -0.02 1.37 16 27 H 0.04 0.70 6.14 -2.39 -0.01 0.69 16 28 H 0.04 1.00 7.78 -2.38 -0.02 0.99 16 29 H 0.08 1.80 7.79 -2.39 -0.02 1.78 16 30 H 0.07 2.17 8.14 -2.38 -0.02 2.15 16 31 H 0.07 1.99 7.07 -2.39 -0.02 1.97 16 32 H 0.06 2.48 8.14 -2.40 -0.02 2.46 16 33 H 0.07 2.56 8.14 -2.40 -0.02 2.54 16 34 H 0.28 15.81 8.31 -92.71 -0.77 15.04 16 35 H 0.08 1.24 8.14 -2.39 -0.02 1.22 16 36 H 0.08 1.30 5.60 -2.39 -0.01 1.28 16 37 H 0.08 1.00 8.14 -2.38 -0.02 0.98 16 38 H 0.09 1.09 8.14 -2.39 -0.02 1.07 16 39 H 0.14 1.47 8.06 -2.91 -0.02 1.45 16 40 H 0.14 1.35 8.06 -2.91 -0.02 1.32 16 41 H 0.14 1.72 8.06 -2.91 -0.02 1.70 16 42 H 0.12 2.44 8.06 -2.91 -0.02 2.42 16 Total: -1.00 -66.83 346.12 2.29 -64.54 By element: Atomic # 1 Polarization: 13.19 SS G_CDS: 0.95 Total: 14.14 kcal Atomic # 6 Polarization: -44.58 SS G_CDS: 4.42 Total: -40.17 kcal Atomic # 7 Polarization: -69.21 SS G_CDS: -3.88 Total: -73.09 kcal Atomic # 14 Polarization: 44.66 SS G_CDS: 1.90 Total: 46.57 kcal Atomic # 16 Polarization: -10.89 SS G_CDS: -1.10 Total: -11.99 kcal Total: -66.83 2.29 -64.54 kcal The number of atoms in the molecule is 42 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000074981530.mol2 42 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 65.062 kcal (2) G-P(sol) polarization free energy of solvation -66.826 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -1.764 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.287 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -64.539 kcal (6) G-S(sol) free energy of system = (1) + (5) 0.523 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 3.29 seconds