Wall clock time and date at job start Tue Mar 31 2020 08:57:26 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31520 * 1 3 3 Si 1.86803 * 120.00116 * 2 1 4 4 H 1.48493 * 109.47259 * 179.97438 * 3 2 1 5 5 H 1.48497 * 109.46990 * 300.00056 * 3 2 1 6 6 H 1.48506 * 109.46833 * 59.99920 * 3 2 1 7 7 C 1.37872 * 119.99786 * 179.97438 * 2 1 3 8 8 H 1.08001 * 119.99958 * 179.97438 * 7 2 1 9 9 C 1.50699 * 120.00427 * 359.97438 * 7 2 1 10 10 N 1.46497 * 109.47372 * 179.97438 * 9 7 2 11 11 C 1.46505 * 120.00298 * 263.73304 * 10 9 7 12 12 C 1.50700 * 109.46685 * 269.99910 * 11 10 9 13 13 C 1.34520 * 125.79145 * 90.00434 * 12 11 10 14 14 C 1.41379 * 106.84499 * 179.97438 * 13 12 11 15 15 C 1.34523 * 106.84005 * 359.97438 * 14 13 12 16 16 O 1.34306 * 108.41920 * 359.73446 * 15 14 13 17 17 C 1.34777 * 120.00076 * 83.72979 * 10 9 7 18 18 O 1.21274 * 120.00313 * 184.73342 * 17 10 9 19 19 C 1.50702 * 119.99654 * 4.74033 * 17 10 9 20 20 C 1.52994 * 109.47365 * 75.95415 * 19 17 10 21 21 C 1.53002 * 109.46978 * 179.97438 * 20 19 17 22 22 C 1.53002 * 109.47343 * 299.99998 * 21 20 19 23 23 C 1.53001 * 109.46531 * 60.00295 * 22 21 20 24 24 C 1.53000 * 109.46780 * 195.95924 * 19 17 10 25 25 H 0.97000 * 119.99735 * 359.97438 * 1 2 3 26 26 H 1.09003 * 109.46591 * 60.00206 * 9 7 2 27 27 H 1.08992 * 109.47076 * 300.00232 * 9 7 2 28 28 H 1.08995 * 109.46850 * 29.99632 * 11 10 9 29 29 H 1.08998 * 109.47346 * 150.00377 * 11 10 9 30 30 H 1.08000 * 126.57771 * 359.95716 * 13 12 11 31 31 H 1.07998 * 126.58164 * 179.97438 * 14 13 12 32 32 H 1.07997 * 125.79070 * 180.02562 * 15 14 13 33 33 H 1.09000 * 109.46999 * 315.95321 * 19 17 10 34 34 H 1.08999 * 109.47233 * 300.00050 * 20 19 17 35 35 H 1.09004 * 109.46788 * 60.00345 * 20 19 17 36 36 H 1.09005 * 109.46815 * 180.02562 * 21 20 19 37 37 H 1.09004 * 109.46838 * 60.00670 * 21 20 19 38 38 H 1.09000 * 109.47239 * 299.99998 * 22 21 20 39 39 H 1.09003 * 109.46834 * 179.97438 * 22 21 20 40 40 H 1.08999 * 109.46683 * 179.97438 * 23 22 21 41 41 H 1.09000 * 109.47601 * 59.99925 * 23 22 21 42 42 H 1.09000 * 109.46862 * 299.99481 * 24 19 17 43 43 H 1.09000 * 109.47210 * 59.99893 * 24 19 17 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3152 0.0000 0.0000 3 14 2.2492 1.6177 0.0000 4 1 3.7092 1.3464 0.0006 5 1 1.8905 2.3964 -1.2125 6 1 1.8904 2.3964 1.2126 7 6 2.0045 -1.1940 0.0005 8 1 3.0845 -1.1941 0.0001 9 6 1.2511 -2.4991 0.0017 10 7 2.2030 -3.6126 0.0015 11 6 2.5729 -4.2600 -1.2597 12 6 1.6263 -5.3997 -1.5357 13 6 0.4724 -5.3154 -2.2220 14 6 -0.0897 -6.6125 -2.2392 15 6 0.7545 -7.4122 -1.5629 16 8 1.7951 -6.6734 -1.1444 17 6 2.7388 -4.0415 1.1615 18 8 3.5904 -4.9048 1.1535 19 6 2.2793 -3.4483 2.4684 20 6 0.9082 -4.0203 2.8341 21 6 0.4421 -3.4184 4.1613 22 6 1.4488 -3.7650 5.2601 23 6 2.8199 -3.1929 4.8942 24 6 3.2860 -3.7943 3.5673 25 1 -0.4850 0.8401 0.0004 26 1 0.6241 -2.5574 -0.8881 27 1 0.6248 -2.5563 0.8919 28 1 2.5146 -3.5347 -2.0711 29 1 3.5908 -4.6428 -1.1868 30 1 0.0552 -4.4271 -2.6730 31 1 -1.0187 -6.9053 -2.7058 32 1 0.6208 -8.4698 -1.3902 33 1 2.2066 -2.3652 2.3701 34 1 0.1911 -3.7738 2.0511 35 1 0.9809 -5.1035 2.9324 36 1 -0.5346 -3.8263 4.4221 37 1 0.3694 -2.3352 4.0634 38 1 1.5214 -4.8482 5.3579 39 1 1.1169 -3.3358 6.2055 40 1 3.5370 -3.4394 5.6772 41 1 2.7473 -2.1097 4.7964 42 1 3.3586 -4.8774 3.6656 43 1 4.2627 -3.3867 3.3068 RHF calculation, no. of doubly occupied orbitals= 55 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000078915844.mol2 43 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 08:57:26 Heat of formation + Delta-G solvation = -46.296711 kcal Electronic energy + Delta-G solvation = -24380.558325 eV Core-core repulsion = 21005.394788 eV Total energy + Delta-G solvation = -3375.163537 eV No. of doubly occupied orbitals = 55 Molecular weight (most abundant/longest-lived isotopes) = 291.162 amu Computer time = 0.49 seconds Orbital eigenvalues (eV) -42.17973 -39.62209 -37.15830 -35.16906 -32.86147 -32.50586 -31.20846 -30.35931 -29.75347 -27.31532 -25.58558 -23.38027 -22.35082 -22.20417 -21.34152 -20.30606 -19.49522 -18.29004 -17.11157 -16.61785 -16.08574 -15.88677 -15.34296 -14.75586 -14.53856 -14.34782 -14.01889 -13.74668 -13.59334 -12.89671 -12.64720 -12.47778 -12.40129 -12.24412 -12.16835 -11.88566 -11.73172 -11.45609 -11.28352 -10.98105 -10.85985 -10.79971 -10.59975 -10.35732 -10.12061 -9.97970 -9.80926 -9.68241 -9.58092 -8.94451 -8.58950 -8.15289 -7.81858 -6.21335 -4.28615 2.02892 2.90712 3.19561 3.24510 3.28888 3.33063 3.56195 4.03442 4.31780 5.02368 5.07524 5.09823 5.11503 5.13598 5.33156 5.35659 5.55356 5.60856 5.64524 5.79450 5.85636 5.86609 5.91369 5.99549 6.04872 6.11130 6.23948 6.29403 6.33216 6.42046 6.43719 6.49670 6.55064 6.55493 6.68876 6.70150 6.83508 6.89966 7.22978 7.47161 7.53754 7.74117 8.03231 8.28425 8.77253 9.01751 9.39420 10.85230 Molecular weight = 291.16amu Principal moments of inertia in cm(-1) A = 0.009994 B = 0.007360 C = 0.004997 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2800.999271 B = 3803.563110 C = 5602.045379 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.889 5.889 2 C 0.067 3.933 3 Si 0.894 3.106 4 H -0.272 1.272 5 H -0.283 1.283 6 H -0.282 1.282 7 C -0.539 4.539 8 H 0.062 0.938 9 C 0.234 3.766 10 N -0.594 5.594 11 C 0.193 3.807 12 C -0.013 4.013 13 C -0.204 4.204 14 C -0.216 4.216 15 C -0.054 4.054 16 O -0.168 6.168 17 C 0.526 3.474 18 O -0.568 6.568 19 C -0.104 4.104 20 C -0.105 4.105 21 C -0.116 4.116 22 C -0.118 4.118 23 C -0.119 4.119 24 C -0.097 4.097 25 H 0.265 0.735 26 H 0.036 0.964 27 H 0.046 0.954 28 H 0.110 0.890 29 H 0.089 0.911 30 H 0.148 0.852 31 H 0.143 0.857 32 H 0.196 0.804 33 H 0.113 0.887 34 H 0.074 0.926 35 H 0.056 0.944 36 H 0.059 0.941 37 H 0.068 0.932 38 H 0.058 0.942 39 H 0.057 0.943 40 H 0.058 0.942 41 H 0.064 0.936 42 H 0.064 0.936 43 H 0.061 0.939 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -0.399 -8.421 2.849 8.898 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.527 5.527 2 C -0.136 4.136 3 Si 0.721 3.279 4 H -0.196 1.196 5 H -0.209 1.209 6 H -0.208 1.208 7 C -0.578 4.578 8 H 0.080 0.920 9 C 0.114 3.886 10 N -0.325 5.325 11 C 0.069 3.931 12 C -0.065 4.065 13 C -0.224 4.224 14 C -0.235 4.235 15 C -0.122 4.122 16 O -0.063 6.063 17 C 0.315 3.685 18 O -0.448 6.448 19 C -0.125 4.125 20 C -0.143 4.143 21 C -0.153 4.153 22 C -0.155 4.155 23 C -0.156 4.156 24 C -0.135 4.135 25 H 0.074 0.926 26 H 0.054 0.946 27 H 0.064 0.936 28 H 0.128 0.872 29 H 0.108 0.892 30 H 0.166 0.834 31 H 0.161 0.839 32 H 0.212 0.788 33 H 0.131 0.869 34 H 0.092 0.908 35 H 0.074 0.926 36 H 0.077 0.923 37 H 0.087 0.913 38 H 0.076 0.924 39 H 0.075 0.925 40 H 0.077 0.923 41 H 0.082 0.918 42 H 0.083 0.917 43 H 0.080 0.920 Dipole moment (debyes) X Y Z Total from point charges 0.130 -8.819 3.005 9.318 hybrid contribution -0.068 1.032 -0.317 1.082 sum 0.061 -7.787 2.688 8.238 Atomic orbital electron populations 1.69936 1.05947 1.27187 1.49593 1.24920 0.94828 0.99190 0.94702 0.86497 0.80225 0.83352 0.77786 1.19620 1.20857 1.20796 1.21543 0.93673 0.90417 1.52122 0.91984 1.19583 0.87597 0.82237 0.99133 1.48297 1.45629 1.34114 1.04414 1.19691 0.95838 0.88831 0.88759 1.23279 0.99357 0.83805 1.00067 1.21662 0.96412 0.98677 1.05634 1.21782 1.02188 0.93775 1.05738 1.23951 0.88337 0.97595 1.02319 1.84104 1.41401 1.19155 1.61663 1.20617 0.80685 0.81316 0.85870 1.90581 1.32959 1.33470 1.87827 1.21287 0.95967 1.03543 0.91682 1.21470 0.95565 0.99476 0.97803 1.21503 0.97862 1.01570 0.94401 1.21541 0.95474 1.00546 0.97987 1.21538 0.96435 1.00675 0.96976 1.21309 0.97841 1.01116 0.93200 0.92569 0.94584 0.93610 0.87244 0.89237 0.83400 0.83895 0.78750 0.86875 0.90785 0.92567 0.92256 0.91281 0.92369 0.92473 0.92350 0.91764 0.91701 0.91999 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.89 -23.74 13.29 55.43 0.74 -23.00 16 2 C 0.07 1.72 5.46 -17.82 -0.10 1.62 16 3 Si 0.89 20.11 29.54 -169.99 -5.02 15.09 16 4 H -0.27 -6.11 7.11 56.52 0.40 -5.71 16 5 H -0.28 -6.35 7.11 56.52 0.40 -5.95 16 6 H -0.28 -6.32 7.11 56.52 0.40 -5.91 16 7 C -0.54 -13.56 8.57 -34.44 -0.30 -13.86 16 8 H 0.06 1.60 7.81 -52.49 -0.41 1.19 16 9 C 0.23 5.39 4.79 -5.20 -0.02 5.37 16 10 N -0.59 -12.52 2.46 -176.44 -0.43 -12.96 16 11 C 0.19 3.65 5.94 -5.19 -0.03 3.61 16 12 C -0.01 -0.24 6.90 -35.62 -0.25 -0.49 16 13 C -0.20 -3.42 10.81 -39.70 -0.43 -3.85 16 14 C -0.22 -3.15 10.91 -39.70 -0.43 -3.58 16 15 C -0.05 -0.78 12.09 29.42 0.36 -0.42 16 16 O -0.17 -3.06 10.65 5.68 0.06 -3.00 16 17 C 0.53 11.22 6.81 -10.98 -0.07 11.14 16 18 O -0.57 -13.18 15.55 5.56 0.09 -13.09 16 19 C -0.10 -1.95 1.69 -91.77 -0.15 -2.11 16 20 C -0.11 -1.80 4.93 -26.73 -0.13 -1.94 16 21 C -0.12 -1.69 5.92 -26.73 -0.16 -1.85 16 22 C -0.12 -1.54 5.92 -26.73 -0.16 -1.70 16 23 C -0.12 -1.65 5.92 -26.75 -0.16 -1.81 16 24 C -0.10 -1.61 4.62 -26.75 -0.12 -1.74 16 25 H 0.26 6.74 8.31 -40.82 -0.34 6.41 16 26 H 0.04 0.87 8.02 -51.93 -0.42 0.46 16 27 H 0.05 1.09 4.83 -51.93 -0.25 0.84 16 28 H 0.11 1.91 8.07 -51.93 -0.42 1.49 16 29 H 0.09 1.70 7.36 -51.93 -0.38 1.32 16 30 H 0.15 2.37 8.06 -52.49 -0.42 1.95 16 31 H 0.14 1.69 8.06 -52.49 -0.42 1.26 16 32 H 0.20 1.97 8.06 -52.49 -0.42 1.55 16 33 H 0.11 2.34 6.70 -51.93 -0.35 1.99 16 34 H 0.07 1.38 6.13 -51.93 -0.32 1.06 16 35 H 0.06 0.95 8.14 -51.93 -0.42 0.53 16 36 H 0.06 0.78 8.14 -51.93 -0.42 0.36 16 37 H 0.07 1.07 8.14 -51.93 -0.42 0.65 16 38 H 0.06 0.74 8.14 -51.93 -0.42 0.31 16 39 H 0.06 0.65 8.14 -51.93 -0.42 0.23 16 40 H 0.06 0.71 8.14 -51.93 -0.42 0.29 16 41 H 0.06 0.91 8.14 -51.93 -0.42 0.49 16 42 H 0.06 1.11 7.93 -51.93 -0.41 0.70 16 43 H 0.06 1.06 8.14 -51.93 -0.42 0.64 16 LS Contribution 348.57 15.07 5.25 5.25 Total: -1.00 -28.96 348.57 -8.22 -37.18 By element: Atomic # 1 Polarization: 12.87 SS G_CDS: -6.74 Total: 6.12 kcal Atomic # 6 Polarization: -9.43 SS G_CDS: -2.16 Total: -11.59 kcal Atomic # 7 Polarization: -36.26 SS G_CDS: 0.30 Total: -35.96 kcal Atomic # 8 Polarization: -16.24 SS G_CDS: 0.15 Total: -16.10 kcal Atomic # 14 Polarization: 20.11 SS G_CDS: -5.02 Total: 15.09 kcal Total LS contribution 5.25 Total: 5.25 kcal Total: -28.96 -8.22 -37.18 kcal The number of atoms in the molecule is 43 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000078915844.mol2 43 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -9.119 kcal (2) G-P(sol) polarization free energy of solvation -28.956 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -38.075 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.222 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -37.177 kcal (6) G-S(sol) free energy of system = (1) + (5) -46.297 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.49 seconds