Wall clock time and date at job start Tue Mar 31 2020 08:57:25 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31520 * 1 3 3 Si 1.86803 * 120.00116 * 2 1 4 4 H 1.48493 * 109.47259 * 179.97438 * 3 2 1 5 5 H 1.48497 * 109.46990 * 300.00056 * 3 2 1 6 6 H 1.48506 * 109.46833 * 59.99920 * 3 2 1 7 7 C 1.37872 * 119.99786 * 179.97438 * 2 1 3 8 8 H 1.08001 * 119.99958 * 179.97438 * 7 2 1 9 9 C 1.50699 * 120.00427 * 359.97438 * 7 2 1 10 10 N 1.46497 * 109.47372 * 179.97438 * 9 7 2 11 11 C 1.46505 * 120.00298 * 263.73304 * 10 9 7 12 12 C 1.50700 * 109.46685 * 269.99910 * 11 10 9 13 13 C 1.34520 * 125.79145 * 90.00434 * 12 11 10 14 14 C 1.41379 * 106.84499 * 179.97438 * 13 12 11 15 15 C 1.34523 * 106.84005 * 359.97438 * 14 13 12 16 16 O 1.34306 * 108.41920 * 359.73446 * 15 14 13 17 17 C 1.34777 * 120.00076 * 83.72979 * 10 9 7 18 18 O 1.21274 * 120.00313 * 184.73342 * 17 10 9 19 19 C 1.50702 * 119.99654 * 4.74033 * 17 10 9 20 20 C 1.52994 * 109.47365 * 75.95415 * 19 17 10 21 21 C 1.53002 * 109.46978 * 179.97438 * 20 19 17 22 22 C 1.53002 * 109.47343 * 299.99998 * 21 20 19 23 23 C 1.53001 * 109.46531 * 60.00295 * 22 21 20 24 24 C 1.53000 * 109.46780 * 195.95924 * 19 17 10 25 25 H 0.97000 * 119.99735 * 359.97438 * 1 2 3 26 26 H 1.09003 * 109.46591 * 60.00206 * 9 7 2 27 27 H 1.08992 * 109.47076 * 300.00232 * 9 7 2 28 28 H 1.08995 * 109.46850 * 29.99632 * 11 10 9 29 29 H 1.08998 * 109.47346 * 150.00377 * 11 10 9 30 30 H 1.08000 * 126.57771 * 359.95716 * 13 12 11 31 31 H 1.07998 * 126.58164 * 179.97438 * 14 13 12 32 32 H 1.07997 * 125.79070 * 180.02562 * 15 14 13 33 33 H 1.09000 * 109.46999 * 315.95321 * 19 17 10 34 34 H 1.08999 * 109.47233 * 300.00050 * 20 19 17 35 35 H 1.09004 * 109.46788 * 60.00345 * 20 19 17 36 36 H 1.09005 * 109.46815 * 180.02562 * 21 20 19 37 37 H 1.09004 * 109.46838 * 60.00670 * 21 20 19 38 38 H 1.09000 * 109.47239 * 299.99998 * 22 21 20 39 39 H 1.09003 * 109.46834 * 179.97438 * 22 21 20 40 40 H 1.08999 * 109.46683 * 179.97438 * 23 22 21 41 41 H 1.09000 * 109.47601 * 59.99925 * 23 22 21 42 42 H 1.09000 * 109.46862 * 299.99481 * 24 19 17 43 43 H 1.09000 * 109.47210 * 59.99893 * 24 19 17 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3152 0.0000 0.0000 3 14 2.2492 1.6177 0.0000 4 1 3.7092 1.3464 0.0006 5 1 1.8905 2.3964 -1.2125 6 1 1.8904 2.3964 1.2126 7 6 2.0045 -1.1940 0.0005 8 1 3.0845 -1.1941 0.0001 9 6 1.2511 -2.4991 0.0017 10 7 2.2030 -3.6126 0.0015 11 6 2.5729 -4.2600 -1.2597 12 6 1.6263 -5.3997 -1.5357 13 6 0.4724 -5.3154 -2.2220 14 6 -0.0897 -6.6125 -2.2392 15 6 0.7545 -7.4122 -1.5629 16 8 1.7951 -6.6734 -1.1444 17 6 2.7388 -4.0415 1.1615 18 8 3.5904 -4.9048 1.1535 19 6 2.2793 -3.4483 2.4684 20 6 0.9082 -4.0203 2.8341 21 6 0.4421 -3.4184 4.1613 22 6 1.4488 -3.7650 5.2601 23 6 2.8199 -3.1929 4.8942 24 6 3.2860 -3.7943 3.5673 25 1 -0.4850 0.8401 0.0004 26 1 0.6241 -2.5574 -0.8881 27 1 0.6248 -2.5563 0.8919 28 1 2.5146 -3.5347 -2.0711 29 1 3.5908 -4.6428 -1.1868 30 1 0.0552 -4.4271 -2.6730 31 1 -1.0187 -6.9053 -2.7058 32 1 0.6208 -8.4698 -1.3902 33 1 2.2066 -2.3652 2.3701 34 1 0.1911 -3.7738 2.0511 35 1 0.9809 -5.1035 2.9324 36 1 -0.5346 -3.8263 4.4221 37 1 0.3694 -2.3352 4.0634 38 1 1.5214 -4.8482 5.3579 39 1 1.1169 -3.3358 6.2055 40 1 3.5370 -3.4394 5.6772 41 1 2.7473 -2.1097 4.7964 42 1 3.3586 -4.8774 3.6656 43 1 4.2627 -3.3867 3.3068 RHF calculation, no. of doubly occupied orbitals= 55 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000078915844.mol2 43 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 08:57:25 Heat of formation + Delta-G solvation = -60.514087 kcal Electronic energy + Delta-G solvation = -24381.174837 eV Core-core repulsion = 21005.394788 eV Total energy + Delta-G solvation = -3375.780048 eV No. of doubly occupied orbitals = 55 Molecular weight (most abundant/longest-lived isotopes) = 291.162 amu Computer time = 0.57 seconds Orbital eigenvalues (eV) -43.47447 -41.22740 -38.53347 -36.93281 -34.70658 -33.88176 -32.61467 -31.63608 -31.13664 -29.14389 -27.04798 -25.17752 -23.82265 -23.47810 -22.61996 -21.59982 -20.78356 -19.89022 -18.77390 -18.19847 -17.76382 -17.46410 -16.74250 -16.35546 -16.18111 -15.84103 -15.39733 -14.97156 -14.90122 -14.54522 -14.16552 -13.96743 -13.72275 -13.70297 -13.55861 -13.33806 -13.14069 -13.01372 -12.94124 -12.66639 -12.51987 -12.25664 -12.06472 -11.89674 -11.73408 -11.48249 -11.31378 -10.98490 -10.86253 -10.66293 -10.47698 -9.64539 -9.40362 -8.20142 -6.33911 0.72533 1.40073 1.44019 1.53748 1.63889 1.71404 2.16780 2.38040 2.49697 3.10424 3.60785 3.80324 3.82914 3.87005 4.06138 4.14933 4.26465 4.33579 4.35468 4.41433 4.53415 4.55558 4.59117 4.63035 4.72694 4.84950 4.91762 4.99002 5.02395 5.06781 5.18362 5.20343 5.23191 5.29083 5.29925 5.37271 5.42196 5.58704 5.61406 5.65907 5.79606 6.06491 6.23414 6.51154 6.80097 7.26961 7.39789 8.85785 Molecular weight = 291.16amu Principal moments of inertia in cm(-1) A = 0.009994 B = 0.007360 C = 0.004997 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2800.999271 B = 3803.563110 C = 5602.045379 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.915 5.915 2 C 0.028 3.972 3 Si 0.952 3.048 4 H -0.273 1.273 5 H -0.278 1.278 6 H -0.276 1.276 7 C -0.547 4.547 8 H 0.051 0.949 9 C 0.252 3.748 10 N -0.596 5.596 11 C 0.191 3.809 12 C -0.044 4.044 13 C -0.205 4.205 14 C -0.221 4.221 15 C -0.044 4.044 16 O -0.193 6.193 17 C 0.518 3.482 18 O -0.591 6.591 19 C -0.100 4.100 20 C -0.099 4.099 21 C -0.113 4.113 22 C -0.113 4.113 23 C -0.115 4.115 24 C -0.092 4.092 25 H 0.268 0.732 26 H 0.022 0.978 27 H 0.038 0.962 28 H 0.116 0.884 29 H 0.082 0.918 30 H 0.149 0.851 31 H 0.174 0.826 32 H 0.239 0.761 33 H 0.091 0.909 34 H 0.052 0.948 35 H 0.058 0.942 36 H 0.077 0.923 37 H 0.056 0.944 38 H 0.066 0.934 39 H 0.082 0.918 40 H 0.082 0.918 41 H 0.059 0.941 42 H 0.060 0.940 43 H 0.050 0.950 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -1.000 -9.009 3.832 9.841 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.553 5.553 2 C -0.173 4.173 3 Si 0.778 3.222 4 H -0.198 1.198 5 H -0.204 1.204 6 H -0.202 1.202 7 C -0.585 4.585 8 H 0.069 0.931 9 C 0.132 3.868 10 N -0.326 5.326 11 C 0.068 3.932 12 C -0.095 4.095 13 C -0.225 4.225 14 C -0.240 4.240 15 C -0.111 4.111 16 O -0.089 6.089 17 C 0.308 3.692 18 O -0.473 6.473 19 C -0.121 4.121 20 C -0.137 4.137 21 C -0.150 4.150 22 C -0.151 4.151 23 C -0.152 4.152 24 C -0.130 4.130 25 H 0.077 0.923 26 H 0.040 0.960 27 H 0.056 0.944 28 H 0.134 0.866 29 H 0.101 0.899 30 H 0.167 0.833 31 H 0.192 0.808 32 H 0.256 0.744 33 H 0.110 0.890 34 H 0.071 0.929 35 H 0.076 0.924 36 H 0.096 0.904 37 H 0.075 0.925 38 H 0.085 0.915 39 H 0.100 0.900 40 H 0.100 0.900 41 H 0.078 0.922 42 H 0.079 0.921 43 H 0.069 0.931 Dipole moment (debyes) X Y Z Total from point charges -0.474 -9.407 3.975 10.223 hybrid contribution 0.092 1.129 -0.699 1.331 sum -0.382 -8.278 3.276 8.911 Atomic orbital electron populations 1.70014 1.07044 1.28073 1.50216 1.25562 0.95516 1.01955 0.94309 0.85591 0.78865 0.79800 0.77954 1.19752 1.20390 1.20174 1.21665 0.93190 0.91547 1.52106 0.93112 1.19220 0.87413 0.82247 0.97906 1.48306 1.45114 1.33743 1.05401 1.19711 0.95905 0.89550 0.88041 1.23021 1.00166 0.84004 1.02276 1.21885 0.95937 0.99965 1.04706 1.22142 1.03385 0.92509 1.05966 1.24883 0.86697 0.99107 1.00460 1.84079 1.43098 1.19301 1.62445 1.21128 0.80285 0.81078 0.86701 1.90552 1.33935 1.34591 1.88209 1.21293 0.97682 1.01913 0.91260 1.21415 0.93936 0.99590 0.98771 1.21499 0.99396 1.00642 0.93468 1.21535 0.94120 1.01204 0.98198 1.21538 0.97700 1.00220 0.95755 1.21292 0.96727 1.00943 0.94079 0.92297 0.96013 0.94421 0.86598 0.89934 0.83316 0.80809 0.74446 0.89041 0.92926 0.92367 0.90407 0.92491 0.91530 0.89967 0.89960 0.92181 0.92102 0.93113 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.91 -49.25 13.29 21.45 0.28 -48.97 16 2 C 0.03 1.42 5.46 84.65 0.46 1.88 16 3 Si 0.95 41.31 29.54 68.60 2.03 43.34 16 4 H -0.27 -11.80 7.11 99.48 0.71 -11.10 16 5 H -0.28 -11.84 7.11 99.48 0.71 -11.13 16 6 H -0.28 -11.69 7.11 99.48 0.71 -10.98 16 7 C -0.55 -28.18 8.57 25.60 0.22 -27.96 16 8 H 0.05 2.69 7.81 -2.91 -0.02 2.67 16 9 C 0.25 12.07 4.79 85.63 0.41 12.48 16 10 N -0.60 -26.14 2.46 -830.52 -2.04 -28.18 16 11 C 0.19 7.54 5.94 85.63 0.51 8.05 16 12 C -0.04 -1.62 6.90 24.83 0.17 -1.45 16 13 C -0.20 -6.85 10.81 22.19 0.24 -6.61 16 14 C -0.22 -6.03 10.91 22.19 0.24 -5.79 16 15 C -0.04 -1.19 12.09 66.97 0.81 -0.38 16 16 O -0.19 -6.99 10.65 -2.58 -0.03 -7.01 16 17 C 0.52 22.85 6.81 87.66 0.60 23.45 16 18 O -0.59 -28.22 15.55 -3.01 -0.05 -28.27 16 19 C -0.10 -3.87 1.69 -11.54 -0.02 -3.89 16 20 C -0.10 -3.42 4.93 30.59 0.15 -3.27 16 21 C -0.11 -3.15 5.92 30.60 0.18 -2.97 16 22 C -0.11 -2.66 5.92 30.60 0.18 -2.47 16 23 C -0.11 -2.98 5.92 30.58 0.18 -2.80 16 24 C -0.09 -3.07 4.62 30.58 0.14 -2.93 16 25 H 0.27 13.65 8.31 -92.71 -0.77 12.88 16 26 H 0.02 1.10 8.02 -2.39 -0.02 1.08 16 27 H 0.04 1.87 4.83 -2.39 -0.01 1.86 16 28 H 0.12 4.26 8.07 -2.39 -0.02 4.24 16 29 H 0.08 3.31 7.36 -2.39 -0.02 3.29 16 30 H 0.15 4.83 8.06 -2.91 -0.02 4.80 16 31 H 0.17 3.55 8.06 -2.91 -0.02 3.53 16 32 H 0.24 3.94 8.06 -2.91 -0.02 3.91 16 33 H 0.09 3.92 6.70 -2.39 -0.02 3.91 16 34 H 0.05 2.02 6.13 -2.39 -0.01 2.00 16 35 H 0.06 1.96 8.14 -2.38 -0.02 1.94 16 36 H 0.08 1.89 8.14 -2.38 -0.02 1.87 16 37 H 0.06 1.73 8.14 -2.38 -0.02 1.71 16 38 H 0.07 1.48 8.14 -2.39 -0.02 1.46 16 39 H 0.08 1.58 8.14 -2.39 -0.02 1.56 16 40 H 0.08 1.77 8.14 -2.39 -0.02 1.75 16 41 H 0.06 1.62 8.14 -2.39 -0.02 1.60 16 42 H 0.06 2.06 7.93 -2.39 -0.02 2.04 16 43 H 0.05 1.76 8.14 -2.39 -0.02 1.74 16 Total: -1.00 -62.75 348.57 5.66 -57.10 By element: Atomic # 1 Polarization: 25.65 SS G_CDS: 0.98 Total: 26.63 kcal Atomic # 6 Polarization: -19.12 SS G_CDS: 4.48 Total: -14.64 kcal Atomic # 7 Polarization: -75.39 SS G_CDS: -1.76 Total: -77.14 kcal Atomic # 8 Polarization: -35.21 SS G_CDS: -0.07 Total: -35.28 kcal Atomic # 14 Polarization: 41.31 SS G_CDS: 2.03 Total: 43.34 kcal Total: -62.75 5.66 -57.10 kcal The number of atoms in the molecule is 43 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000078915844.mol2 43 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -3.418 kcal (2) G-P(sol) polarization free energy of solvation -62.752 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -66.171 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 5.657 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -57.096 kcal (6) G-S(sol) free energy of system = (1) + (5) -60.514 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.57 seconds