Wall clock time and date at job start Tue Mar 31 2020 06:31:03 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52995 * 1 3 3 H 1.08996 * 109.76683 * 2 1 4 4 C 1.53042 * 109.77238 * 239.25721 * 2 1 3 5 5 C 1.50803 * 109.65306 * 193.04079 * 4 2 1 6 6 C 1.38618 * 118.12045 * 195.40789 * 5 4 2 7 7 C 1.38060 * 120.48416 * 180.63310 * 6 5 4 8 8 C 1.38317 * 119.88421 * 359.97438 * 7 6 5 9 9 C 1.37806 * 119.95916 * 359.85508 * 8 7 6 10 10 C 1.38376 * 122.01158 * 15.77228 * 5 4 2 11 11 N 1.39399 * 122.95479 * 359.13659 * 10 5 4 12 12 C 1.46904 * 111.00155 * 254.66322 * 11 10 5 13 13 C 1.53000 * 109.46997 * 176.20355 * 12 11 10 14 14 C 1.53005 * 109.46992 * 174.33648 * 13 12 11 15 15 S 1.80996 * 109.47238 * 180.02562 * 14 13 12 16 16 C 1.76202 * 99.99937 * 180.02562 * 15 14 13 17 17 H 1.08003 * 120.00228 * 0.02562 * 16 15 14 18 18 C 1.38802 * 120.00142 * 179.97438 * 16 15 14 19 19 N 1.31634 * 119.99732 * 359.97438 * 18 16 15 20 20 Si 1.86796 * 120.00289 * 180.02562 * 18 16 15 21 21 H 1.48500 * 109.46988 * 359.97438 * 20 18 16 22 22 H 1.48496 * 109.47266 * 119.99793 * 20 18 16 23 23 H 1.48499 * 109.47196 * 240.00090 * 20 18 16 24 24 C 1.46426 * 113.13762 * 20.21651 * 11 10 5 25 25 H 1.09005 * 109.46887 * 180.74078 * 1 2 3 26 26 H 1.09000 * 109.47580 * 300.74159 * 1 2 3 27 27 H 1.08996 * 109.47114 * 60.74095 * 1 2 3 28 28 H 1.08995 * 109.43988 * 72.98469 * 4 2 1 29 29 H 1.09004 * 109.41129 * 313.08010 * 4 2 1 30 30 H 1.07994 * 119.75901 * 0.65868 * 6 5 4 31 31 H 1.07998 * 120.05426 * 179.97438 * 7 6 5 32 32 H 1.07996 * 120.01722 * 179.82859 * 8 7 6 33 33 H 1.07991 * 119.79115 * 180.02562 * 9 8 7 34 34 H 1.08999 * 109.46665 * 56.20527 * 12 11 10 35 35 H 1.08999 * 109.47019 * 296.20721 * 12 11 10 36 36 H 1.08999 * 109.47667 * 294.33550 * 13 12 11 37 37 H 1.09002 * 109.47060 * 54.34349 * 13 12 11 38 38 H 1.08999 * 109.46834 * 300.00412 * 14 13 12 39 39 H 1.09002 * 109.46873 * 59.99945 * 14 13 12 40 40 H 0.96992 * 120.00089 * 180.02562 * 19 18 16 41 41 H 1.09000 * 109.60322 * 66.41258 * 24 11 10 42 42 H 1.09005 * 109.60452 * 186.89958 * 24 11 10 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8986 1.0257 0.0000 4 6 2.0477 -0.7362 -1.2378 5 6 3.5212 -1.0164 -1.0819 6 6 4.2407 -1.3769 -2.2106 7 6 5.5896 -1.6570 -2.1214 8 6 6.2306 -1.5775 -0.8983 9 6 5.5227 -1.2163 0.2275 10 6 4.1587 -0.9302 0.1432 11 7 3.5006 -0.5643 1.3164 12 6 3.8460 0.8090 1.7074 13 6 3.0348 1.2069 2.9421 14 6 3.4950 2.5810 3.4334 15 16 2.5359 3.0515 4.8945 16 6 3.2519 4.6247 5.2368 17 1 4.0412 5.0074 4.6068 18 6 2.8006 5.3727 6.3154 19 7 1.8375 4.9070 7.0824 20 14 3.5591 7.0408 6.6779 21 1 4.6143 7.3333 5.6748 22 1 2.5080 8.0877 6.6108 23 1 4.1584 7.0274 8.0365 24 6 2.0488 -0.7387 1.2400 25 1 -0.3633 -1.0276 0.0133 26 1 -0.3634 0.5253 0.8832 27 1 -0.3633 0.5023 -0.8965 28 1 1.8873 -0.1180 -2.1210 29 1 1.5094 -1.6773 -1.3511 30 1 3.7425 -1.4388 -3.1667 31 1 6.1433 -1.9376 -3.0052 32 1 7.2852 -1.7988 -0.8256 33 1 6.0259 -1.1546 1.1809 34 1 3.6163 1.4889 0.8870 35 1 4.9099 0.8643 1.9381 36 1 1.9768 1.2491 2.6837 37 1 3.1873 0.4695 3.7302 38 1 4.5530 2.5388 3.6918 39 1 3.3426 3.3184 2.6453 40 1 1.5219 5.4298 7.8359 41 1 1.8116 -1.7996 1.1597 42 1 1.5831 -0.3242 2.1342 RHF calculation, no. of doubly occupied orbitals= 52 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000080628356.mol2 42 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 06:31:03 Heat of formation + Delta-G solvation = 8.268176 kcal Electronic energy + Delta-G solvation = -20581.423067 eV Core-core repulsion = 17651.378513 eV Total energy + Delta-G solvation = -2930.044555 eV No. of doubly occupied orbitals = 52 Molecular weight (most abundant/longest-lived isotopes) = 291.135 amu Computer time = 5.11 seconds Orbital eigenvalues (eV) -40.82003 -37.49967 -35.14436 -32.80471 -32.41537 -31.43228 -29.70381 -26.83677 -26.43750 -25.56686 -24.32297 -22.12406 -21.99854 -20.97490 -19.18527 -17.55163 -16.93208 -16.06026 -15.99815 -15.24007 -14.99079 -14.80422 -14.35173 -14.15202 -13.91564 -13.65519 -13.40419 -13.01476 -12.92368 -12.47314 -12.32027 -12.14052 -11.85650 -11.73529 -11.46623 -11.34510 -11.34010 -11.08514 -10.86362 -10.80116 -10.70328 -10.58660 -10.24234 -9.61627 -9.25946 -9.06750 -8.79698 -8.30700 -7.89572 -6.53090 -6.23231 -3.93312 1.26345 1.30428 3.20866 3.21795 3.29854 3.48905 3.65258 3.86895 4.22141 4.51391 4.61241 4.66473 4.84669 4.97377 5.10153 5.12911 5.17848 5.26536 5.28766 5.32502 5.42641 5.45150 5.47183 5.56746 5.60453 5.67737 5.74202 5.77793 5.80185 5.91086 5.97735 6.05948 6.11780 6.17139 6.24042 6.34707 6.39907 6.45491 6.54604 6.68894 6.77187 7.01538 7.40904 7.60858 8.36810 9.23382 10.85037 Molecular weight = 291.14amu Principal moments of inertia in cm(-1) A = 0.023535 B = 0.003212 C = 0.002973 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1189.422765 B = 8714.030466 C = 9416.856067 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.142 4.142 2 C -0.130 4.130 3 H 0.077 0.923 4 C -0.072 4.072 5 C -0.121 4.121 6 C -0.106 4.106 7 C -0.140 4.140 8 C -0.111 4.111 9 C -0.121 4.121 10 C 0.118 3.882 11 N -0.499 5.499 12 C 0.067 3.933 13 C -0.100 4.100 14 C -0.112 4.112 15 S -0.131 6.131 16 C -0.515 4.515 17 H 0.073 0.927 18 C 0.070 3.930 19 N -0.870 5.870 20 Si 0.918 3.082 21 H -0.272 1.272 22 H -0.280 1.280 23 H -0.280 1.280 24 C 0.052 3.948 25 H 0.055 0.945 26 H 0.063 0.937 27 H 0.055 0.945 28 H 0.073 0.927 29 H 0.075 0.925 30 H 0.117 0.883 31 H 0.118 0.882 32 H 0.121 0.879 33 H 0.126 0.874 34 H 0.040 0.960 35 H 0.078 0.922 36 H 0.069 0.931 37 H 0.076 0.924 38 H 0.061 0.939 39 H 0.058 0.942 40 H 0.267 0.733 41 H 0.077 0.923 42 H 0.097 0.903 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 2.573 -13.415 -18.055 22.640 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.200 4.200 2 C -0.150 4.150 3 H 0.095 0.905 4 C -0.109 4.109 5 C -0.124 4.124 6 C -0.125 4.125 7 C -0.158 4.158 8 C -0.130 4.130 9 C -0.141 4.141 10 C 0.022 3.978 11 N -0.214 5.214 12 C -0.059 4.059 13 C -0.138 4.138 14 C -0.261 4.261 15 S 0.097 5.903 16 C -0.664 4.664 17 H 0.091 0.909 18 C -0.138 4.138 19 N -0.505 5.505 20 Si 0.745 3.255 21 H -0.196 1.196 22 H -0.206 1.206 23 H -0.206 1.206 24 C -0.075 4.075 25 H 0.074 0.926 26 H 0.082 0.918 27 H 0.074 0.926 28 H 0.092 0.908 29 H 0.094 0.906 30 H 0.135 0.865 31 H 0.136 0.864 32 H 0.139 0.861 33 H 0.144 0.856 34 H 0.058 0.942 35 H 0.096 0.904 36 H 0.088 0.912 37 H 0.095 0.905 38 H 0.080 0.920 39 H 0.077 0.923 40 H 0.076 0.924 41 H 0.095 0.905 42 H 0.115 0.885 Dipole moment (debyes) X Y Z Total from point charges 1.773 -14.208 -16.918 22.163 hybrid contribution 1.233 2.163 -1.004 2.685 sum 3.007 -12.045 -17.922 21.802 Atomic orbital electron populations 1.21730 0.94054 1.01916 1.02312 1.21780 0.96828 1.00340 0.96060 0.90471 1.20594 0.91299 1.00582 0.98448 1.19998 0.96617 1.03220 0.92561 1.20942 0.94294 0.99703 0.97556 1.21004 0.94702 1.02417 0.97702 1.20971 0.99690 0.99713 0.92580 1.21098 0.93142 1.00857 0.98982 1.18574 0.93087 0.98370 0.87804 1.58739 1.09300 1.24450 1.28923 1.22285 1.00963 0.85451 0.97249 1.21445 0.99408 0.96605 0.96380 1.23218 1.02895 0.97750 1.02282 1.84607 1.50459 1.24557 1.30674 1.22734 1.23965 1.03003 1.16662 0.90920 1.25017 0.94988 0.98682 0.95129 1.70031 1.26225 1.37797 1.16483 0.86115 0.78991 0.82106 0.78330 1.19603 1.20580 1.20556 1.22461 0.85907 1.00865 0.98261 0.92560 0.91837 0.92630 0.90808 0.90624 0.86450 0.86367 0.86089 0.85629 0.94200 0.90364 0.91229 0.90488 0.92015 0.92281 0.92367 0.90503 0.88507 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -1.32 9.20 37.16 0.34 -0.97 16 2 C -0.13 -1.39 2.78 -90.40 -0.25 -1.64 16 3 H 0.08 0.94 6.64 -51.93 -0.34 0.60 16 4 C -0.07 -0.71 5.15 -27.81 -0.14 -0.86 16 5 C -0.12 -1.39 5.74 -104.38 -0.60 -1.99 16 6 C -0.11 -1.09 9.63 -39.51 -0.38 -1.47 16 7 C -0.14 -1.36 10.05 -39.62 -0.40 -1.76 16 8 C -0.11 -1.14 10.03 -39.71 -0.40 -1.54 16 9 C -0.12 -1.44 9.42 -39.22 -0.37 -1.81 16 10 C 0.12 1.50 5.11 -83.85 -0.43 1.08 16 11 N -0.50 -6.55 4.61 -171.28 -0.79 -7.34 16 12 C 0.07 0.93 4.59 -3.82 -0.02 0.92 16 13 C -0.10 -1.61 4.43 -26.73 -0.12 -1.73 16 14 C -0.11 -2.25 5.67 37.16 0.21 -2.04 16 15 S -0.13 -3.41 21.44 -107.50 -2.30 -5.72 16 16 C -0.52 -14.79 9.50 30.94 0.29 -14.50 16 17 H 0.07 2.03 7.80 -52.48 -0.41 1.62 16 18 C 0.07 2.01 5.49 -17.43 -0.10 1.92 16 19 N -0.87 -25.97 13.22 55.49 0.73 -25.24 16 20 Si 0.92 21.57 29.55 -169.99 -5.02 16.55 16 21 H -0.27 -6.24 7.11 56.52 0.40 -5.84 16 22 H -0.28 -6.45 7.11 56.52 0.40 -6.05 16 23 H -0.28 -6.45 7.11 56.52 0.40 -6.05 16 24 C 0.05 0.62 4.78 -3.88 -0.02 0.60 16 25 H 0.06 0.46 8.14 -51.93 -0.42 0.04 16 26 H 0.06 0.63 8.14 -51.93 -0.42 0.20 16 27 H 0.05 0.47 8.14 -51.93 -0.42 0.05 16 28 H 0.07 0.66 8.14 -51.93 -0.42 0.24 16 29 H 0.08 0.68 8.08 -51.93 -0.42 0.26 16 30 H 0.12 0.96 8.06 -52.49 -0.42 0.53 16 31 H 0.12 0.88 8.06 -52.49 -0.42 0.46 16 32 H 0.12 0.98 8.06 -52.49 -0.42 0.55 16 33 H 0.13 1.44 8.06 -52.49 -0.42 1.02 16 34 H 0.04 0.57 6.91 -51.93 -0.36 0.21 16 35 H 0.08 1.09 7.89 -51.93 -0.41 0.68 16 36 H 0.07 1.10 6.42 -51.93 -0.33 0.77 16 37 H 0.08 1.29 8.14 -51.93 -0.42 0.86 16 38 H 0.06 1.23 8.14 -51.92 -0.42 0.81 16 39 H 0.06 1.18 8.14 -51.92 -0.42 0.76 16 40 H 0.27 7.39 8.31 -40.82 -0.34 7.05 16 41 H 0.08 0.87 8.11 -51.93 -0.42 0.45 16 42 H 0.10 1.19 5.57 -51.93 -0.29 0.90 16 LS Contribution 346.69 15.07 5.22 5.22 Total: -1.00 -30.88 346.69 -11.31 -42.18 By element: Atomic # 1 Polarization: 6.92 SS G_CDS: -6.77 Total: 0.14 kcal Atomic # 6 Polarization: -23.43 SS G_CDS: -2.37 Total: -25.80 kcal Atomic # 7 Polarization: -32.52 SS G_CDS: -0.06 Total: -32.58 kcal Atomic # 14 Polarization: 21.57 SS G_CDS: -5.02 Total: 16.55 kcal Atomic # 16 Polarization: -3.41 SS G_CDS: -2.30 Total: -5.72 kcal Total LS contribution 5.22 Total: 5.22 kcal Total: -30.88 -11.31 -42.18 kcal The number of atoms in the molecule is 42 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000080628356.mol2 42 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 50.450 kcal (2) G-P(sol) polarization free energy of solvation -30.877 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 19.574 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -11.305 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -42.182 kcal (6) G-S(sol) free energy of system = (1) + (5) 8.268 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 5.12 seconds