Wall clock time and date at job start Tue Mar 31 2020 06:30:56 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52995 * 1 3 3 H 1.08996 * 109.76683 * 2 1 4 4 C 1.53042 * 109.77238 * 239.25721 * 2 1 3 5 5 C 1.50803 * 109.65306 * 193.04079 * 4 2 1 6 6 C 1.38618 * 118.12045 * 195.40789 * 5 4 2 7 7 C 1.38060 * 120.48416 * 180.63310 * 6 5 4 8 8 C 1.38317 * 119.88421 * 359.97438 * 7 6 5 9 9 C 1.37806 * 119.95916 * 359.85508 * 8 7 6 10 10 C 1.38376 * 122.01158 * 15.77228 * 5 4 2 11 11 N 1.39399 * 122.95479 * 359.13659 * 10 5 4 12 12 C 1.46904 * 111.00155 * 254.66322 * 11 10 5 13 13 C 1.53000 * 109.46997 * 176.20355 * 12 11 10 14 14 C 1.53005 * 109.46992 * 174.33648 * 13 12 11 15 15 S 1.80996 * 109.47238 * 180.02562 * 14 13 12 16 16 C 1.76202 * 99.99937 * 180.02562 * 15 14 13 17 17 H 1.08003 * 120.00228 * 0.02562 * 16 15 14 18 18 C 1.38802 * 120.00142 * 179.97438 * 16 15 14 19 19 N 1.31634 * 119.99732 * 359.97438 * 18 16 15 20 20 Si 1.86796 * 120.00289 * 180.02562 * 18 16 15 21 21 H 1.48500 * 109.46988 * 359.97438 * 20 18 16 22 22 H 1.48496 * 109.47266 * 119.99793 * 20 18 16 23 23 H 1.48499 * 109.47196 * 240.00090 * 20 18 16 24 24 C 1.46426 * 113.13762 * 20.21651 * 11 10 5 25 25 H 1.09005 * 109.46887 * 180.74078 * 1 2 3 26 26 H 1.09000 * 109.47580 * 300.74159 * 1 2 3 27 27 H 1.08996 * 109.47114 * 60.74095 * 1 2 3 28 28 H 1.08995 * 109.43988 * 72.98469 * 4 2 1 29 29 H 1.09004 * 109.41129 * 313.08010 * 4 2 1 30 30 H 1.07994 * 119.75901 * 0.65868 * 6 5 4 31 31 H 1.07998 * 120.05426 * 179.97438 * 7 6 5 32 32 H 1.07996 * 120.01722 * 179.82859 * 8 7 6 33 33 H 1.07991 * 119.79115 * 180.02562 * 9 8 7 34 34 H 1.08999 * 109.46665 * 56.20527 * 12 11 10 35 35 H 1.08999 * 109.47019 * 296.20721 * 12 11 10 36 36 H 1.08999 * 109.47667 * 294.33550 * 13 12 11 37 37 H 1.09002 * 109.47060 * 54.34349 * 13 12 11 38 38 H 1.08999 * 109.46834 * 300.00412 * 14 13 12 39 39 H 1.09002 * 109.46873 * 59.99945 * 14 13 12 40 40 H 0.96992 * 120.00089 * 180.02562 * 19 18 16 41 41 H 1.09000 * 109.60322 * 66.41258 * 24 11 10 42 42 H 1.09005 * 109.60452 * 186.89958 * 24 11 10 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8986 1.0257 0.0000 4 6 2.0477 -0.7362 -1.2378 5 6 3.5212 -1.0164 -1.0819 6 6 4.2407 -1.3769 -2.2106 7 6 5.5896 -1.6570 -2.1214 8 6 6.2306 -1.5775 -0.8983 9 6 5.5227 -1.2163 0.2275 10 6 4.1587 -0.9302 0.1432 11 7 3.5006 -0.5643 1.3164 12 6 3.8460 0.8090 1.7074 13 6 3.0348 1.2069 2.9421 14 6 3.4950 2.5810 3.4334 15 16 2.5359 3.0515 4.8945 16 6 3.2519 4.6247 5.2368 17 1 4.0412 5.0074 4.6068 18 6 2.8006 5.3727 6.3154 19 7 1.8375 4.9070 7.0824 20 14 3.5591 7.0408 6.6779 21 1 4.6143 7.3333 5.6748 22 1 2.5080 8.0877 6.6108 23 1 4.1584 7.0274 8.0365 24 6 2.0488 -0.7387 1.2400 25 1 -0.3633 -1.0276 0.0133 26 1 -0.3634 0.5253 0.8832 27 1 -0.3633 0.5023 -0.8965 28 1 1.8873 -0.1180 -2.1210 29 1 1.5094 -1.6773 -1.3511 30 1 3.7425 -1.4388 -3.1667 31 1 6.1433 -1.9376 -3.0052 32 1 7.2852 -1.7988 -0.8256 33 1 6.0259 -1.1546 1.1809 34 1 3.6163 1.4889 0.8870 35 1 4.9099 0.8643 1.9381 36 1 1.9768 1.2491 2.6837 37 1 3.1873 0.4695 3.7302 38 1 4.5530 2.5388 3.6918 39 1 3.3426 3.3184 2.6453 40 1 1.5219 5.4298 7.8359 41 1 1.8116 -1.7996 1.1597 42 1 1.5831 -0.3242 2.1342 RHF calculation, no. of doubly occupied orbitals= 52 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000080628356.mol2 42 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 06:30:56 Heat of formation + Delta-G solvation = -7.324346 kcal Electronic energy + Delta-G solvation = -20582.099210 eV Core-core repulsion = 17651.378513 eV Total energy + Delta-G solvation = -2930.720697 eV No. of doubly occupied orbitals = 52 Molecular weight (most abundant/longest-lived isotopes) = 291.135 amu Computer time = 2.53 seconds Orbital eigenvalues (eV) -41.71195 -38.38602 -36.12183 -34.62179 -33.99981 -32.23850 -30.61873 -28.03377 -27.63031 -27.27720 -25.45816 -23.03505 -22.85071 -22.16981 -20.11034 -19.57992 -17.88952 -17.01042 -16.98311 -16.90507 -16.35597 -16.20965 -15.58508 -15.16457 -15.09242 -14.73995 -14.49624 -14.24395 -14.02253 -13.62706 -13.42630 -13.13356 -13.11267 -12.95363 -12.92032 -12.69200 -12.48746 -12.43610 -12.30965 -12.15532 -11.86678 -11.60897 -11.48502 -11.27061 -11.15503 -10.34855 -10.18247 -9.59904 -8.82221 -8.67069 -8.38363 -6.14358 0.43420 0.48839 1.31017 1.37724 1.48708 1.72457 2.26880 2.71031 2.94142 2.95976 3.30754 3.70409 3.76604 3.81041 3.93520 4.02287 4.16005 4.19994 4.26299 4.34579 4.40349 4.44957 4.54093 4.60166 4.65284 4.70913 4.73986 4.77126 4.83312 4.96166 4.99031 5.04689 5.12192 5.18501 5.22075 5.30656 5.38614 5.39367 5.45009 5.56434 5.66102 5.90799 6.06567 6.17583 6.49120 7.04133 8.71279 Molecular weight = 291.14amu Principal moments of inertia in cm(-1) A = 0.023535 B = 0.003212 C = 0.002973 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1189.422765 B = 8714.030466 C = 9416.856067 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.139 4.139 2 C -0.126 4.126 3 H 0.058 0.942 4 C -0.068 4.068 5 C -0.132 4.132 6 C -0.111 4.111 7 C -0.138 4.138 8 C -0.115 4.115 9 C -0.138 4.138 10 C 0.092 3.908 11 N -0.505 5.505 12 C 0.081 3.919 13 C -0.085 4.085 14 C -0.088 4.088 15 S -0.190 6.190 16 C -0.539 4.539 17 H 0.071 0.929 18 C 0.016 3.984 19 N -0.907 5.907 20 Si 0.994 3.006 21 H -0.263 1.263 22 H -0.271 1.271 23 H -0.271 1.271 24 C 0.051 3.949 25 H 0.068 0.932 26 H 0.051 0.949 27 H 0.065 0.935 28 H 0.085 0.915 29 H 0.088 0.912 30 H 0.140 0.860 31 H 0.145 0.855 32 H 0.141 0.859 33 H 0.121 0.879 34 H 0.038 0.962 35 H 0.077 0.923 36 H 0.071 0.929 37 H 0.070 0.930 38 H 0.062 0.938 39 H 0.060 0.940 40 H 0.272 0.728 41 H 0.082 0.918 42 H 0.086 0.914 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 3.365 -13.560 -20.063 24.448 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.196 4.196 2 C -0.146 4.146 3 H 0.077 0.923 4 C -0.105 4.105 5 C -0.135 4.135 6 C -0.130 4.130 7 C -0.156 4.156 8 C -0.134 4.134 9 C -0.157 4.157 10 C -0.004 4.004 11 N -0.221 5.221 12 C -0.046 4.046 13 C -0.123 4.123 14 C -0.237 4.237 15 S 0.038 5.962 16 C -0.687 4.687 17 H 0.090 0.910 18 C -0.189 4.189 19 N -0.543 5.543 20 Si 0.816 3.184 21 H -0.187 1.187 22 H -0.196 1.196 23 H -0.196 1.196 24 C -0.076 4.076 25 H 0.087 0.913 26 H 0.071 0.929 27 H 0.084 0.916 28 H 0.104 0.896 29 H 0.106 0.894 30 H 0.158 0.842 31 H 0.163 0.837 32 H 0.159 0.841 33 H 0.139 0.861 34 H 0.056 0.944 35 H 0.096 0.904 36 H 0.090 0.910 37 H 0.089 0.911 38 H 0.081 0.919 39 H 0.079 0.921 40 H 0.081 0.919 41 H 0.101 0.899 42 H 0.104 0.896 Dipole moment (debyes) X Y Z Total from point charges 2.565 -14.370 -18.938 23.911 hybrid contribution 1.020 2.107 -0.468 2.388 sum 3.585 -12.263 -19.407 23.234 Atomic orbital electron populations 1.21703 0.92970 1.02700 1.02271 1.21707 0.97662 0.99167 0.96030 0.92316 1.20604 0.90521 1.01185 0.98199 1.20246 0.97513 1.03165 0.92546 1.21264 0.94668 0.98997 0.98046 1.21379 0.94788 1.01093 0.98368 1.21261 1.00728 0.99040 0.92323 1.21236 0.93216 1.01688 0.99600 1.18730 0.93602 0.99963 0.88074 1.58707 1.10018 1.23381 1.29984 1.22032 1.00281 0.86498 0.95813 1.21289 0.99863 0.94041 0.97132 1.23129 1.01726 0.99731 0.99141 1.84591 1.52573 1.24457 1.34555 1.23073 1.24293 1.04037 1.17248 0.91036 1.26060 0.95291 1.02929 0.94652 1.70154 1.27517 1.39600 1.17052 0.84970 0.78313 0.76691 0.78429 1.18733 1.19599 1.19639 1.22473 0.85349 1.01301 0.98467 0.91328 0.92939 0.91644 0.89647 0.89399 0.84196 0.83726 0.84076 0.86099 0.94411 0.90431 0.91029 0.91130 0.91947 0.92124 0.91934 0.89925 0.89596 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -2.41 9.20 71.98 0.66 -1.75 16 2 C -0.13 -2.58 2.78 -10.65 -0.03 -2.61 16 3 H 0.06 1.42 6.64 -2.39 -0.02 1.40 16 4 C -0.07 -1.22 5.15 29.89 0.15 -1.06 16 5 C -0.13 -2.82 5.74 -19.71 -0.11 -2.93 16 6 C -0.11 -1.98 9.63 22.32 0.21 -1.77 16 7 C -0.14 -2.30 10.05 22.25 0.22 -2.08 16 8 C -0.12 -2.15 10.03 22.19 0.22 -1.92 16 9 C -0.14 -3.18 9.42 22.50 0.21 -2.97 16 10 C 0.09 2.28 5.11 38.30 0.20 2.48 16 11 N -0.51 -13.20 4.61 -695.81 -3.21 -16.41 16 12 C 0.08 2.26 4.59 86.30 0.40 2.66 16 13 C -0.08 -2.77 4.43 30.60 0.14 -2.64 16 14 C -0.09 -3.58 5.67 71.98 0.41 -3.17 16 15 S -0.19 -10.19 21.44 -56.49 -1.21 -11.40 16 16 C -0.54 -31.38 9.50 67.95 0.65 -30.74 16 17 H 0.07 4.04 7.80 -2.91 -0.02 4.01 16 18 C 0.02 0.89 5.49 84.86 0.47 1.36 16 19 N -0.91 -54.91 13.22 21.65 0.29 -54.62 16 20 Si 0.99 44.18 29.55 68.60 2.03 46.21 16 21 H -0.26 -11.23 7.11 99.48 0.71 -10.52 16 22 H -0.27 -11.56 7.11 99.48 0.71 -10.86 16 23 H -0.27 -11.60 7.11 99.48 0.71 -10.90 16 24 C 0.05 1.20 4.78 86.52 0.41 1.61 16 25 H 0.07 1.02 8.14 -2.38 -0.02 1.00 16 26 H 0.05 1.02 8.14 -2.39 -0.02 1.00 16 27 H 0.06 1.01 8.14 -2.39 -0.02 0.99 16 28 H 0.09 1.33 8.14 -2.39 -0.02 1.31 16 29 H 0.09 1.36 8.08 -2.38 -0.02 1.34 16 30 H 0.14 1.80 8.06 -2.91 -0.02 1.77 16 31 H 0.14 1.61 8.06 -2.91 -0.02 1.58 16 32 H 0.14 1.96 8.06 -2.91 -0.02 1.94 16 33 H 0.12 2.79 8.06 -2.91 -0.02 2.76 16 34 H 0.04 1.07 6.91 -2.39 -0.02 1.06 16 35 H 0.08 2.17 7.89 -2.39 -0.02 2.15 16 36 H 0.07 2.32 6.42 -2.39 -0.02 2.31 16 37 H 0.07 2.41 8.14 -2.39 -0.02 2.39 16 38 H 0.06 2.52 8.14 -2.40 -0.02 2.50 16 39 H 0.06 2.44 8.14 -2.39 -0.02 2.42 16 40 H 0.27 15.20 8.31 -92.71 -0.77 14.43 16 41 H 0.08 1.82 8.11 -2.39 -0.02 1.80 16 42 H 0.09 2.16 5.57 -2.38 -0.01 2.14 16 Total: -1.00 -66.79 346.69 3.08 -63.71 By element: Atomic # 1 Polarization: 17.06 SS G_CDS: 0.98 Total: 18.04 kcal Atomic # 6 Polarization: -49.74 SS G_CDS: 4.21 Total: -45.53 kcal Atomic # 7 Polarization: -68.10 SS G_CDS: -2.92 Total: -71.03 kcal Atomic # 14 Polarization: 44.18 SS G_CDS: 2.03 Total: 46.21 kcal Atomic # 16 Polarization: -10.19 SS G_CDS: -1.21 Total: -11.40 kcal Total: -66.79 3.08 -63.71 kcal The number of atoms in the molecule is 42 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000080628356.mol2 42 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 56.386 kcal (2) G-P(sol) polarization free energy of solvation -66.789 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -10.403 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.078 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -63.710 kcal (6) G-S(sol) free energy of system = (1) + (5) -7.324 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 2.54 seconds