Wall clock time and date at job start Tue Mar 31 2020 06:31:16 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52999 * 1 3 3 H 1.09007 * 109.76683 * 2 1 4 4 C 1.53043 * 109.81985 * 120.76961 * 2 1 3 5 5 C 1.50798 * 109.64850 * 166.94751 * 4 2 1 6 6 C 1.38623 * 118.12180 * 164.50644 * 5 4 2 7 7 C 1.38051 * 120.48618 * 179.71618 * 6 5 4 8 8 C 1.38316 * 119.89025 * 359.97438 * 7 6 5 9 9 C 1.37806 * 119.95262 * 0.14765 * 8 7 6 10 10 C 1.38376 * 122.01703 * 344.46317 * 5 4 2 11 11 N 1.39409 * 122.96581 * 0.48563 * 10 5 4 12 12 C 1.46900 * 110.99922 * 214.50527 * 11 10 5 13 13 C 1.52994 * 109.46994 * 190.63875 * 12 11 10 14 14 C 1.53007 * 109.47132 * 174.70675 * 13 12 11 15 15 S 1.80999 * 109.46948 * 180.02562 * 14 13 12 16 16 C 1.76208 * 99.99638 * 179.97438 * 15 14 13 17 17 H 1.08000 * 120.00048 * 0.02562 * 16 15 14 18 18 C 1.38803 * 119.99659 * 179.97438 * 16 15 14 19 19 N 1.31627 * 120.00324 * 0.02562 * 18 16 15 20 20 Si 1.86799 * 119.99511 * 179.97438 * 18 16 15 21 21 H 1.48504 * 109.46950 * 90.00465 * 20 18 16 22 22 H 1.48499 * 109.46960 * 209.99793 * 20 18 16 23 23 H 1.48488 * 109.47490 * 330.00502 * 20 18 16 24 24 C 1.46430 * 113.13905 * 340.05707 * 11 10 5 25 25 H 1.08998 * 109.47111 * 180.74410 * 1 2 3 26 26 H 1.09008 * 109.46556 * 300.73629 * 1 2 3 27 27 H 1.08996 * 109.47286 * 60.73712 * 1 2 3 28 28 H 1.09001 * 109.44433 * 287.00245 * 4 2 1 29 29 H 1.09004 * 109.44216 * 46.93316 * 4 2 1 30 30 H 1.07991 * 119.75796 * 359.73096 * 6 5 4 31 31 H 1.07995 * 120.05770 * 179.97438 * 7 6 5 32 32 H 1.08000 * 120.02592 * 180.12678 * 8 7 6 33 33 H 1.07998 * 119.79449 * 179.97438 * 9 8 7 34 34 H 1.09000 * 109.47519 * 70.63819 * 12 11 10 35 35 H 1.08999 * 109.47196 * 310.63809 * 12 11 10 36 36 H 1.09002 * 109.47520 * 294.70770 * 13 12 11 37 37 H 1.08997 * 109.47376 * 54.70729 * 13 12 11 38 38 H 1.09002 * 109.46916 * 299.99632 * 14 13 12 39 39 H 1.08997 * 109.46946 * 59.99791 * 14 13 12 40 40 H 0.96999 * 120.00003 * 179.97438 * 19 18 16 41 41 H 1.08999 * 109.60160 * 173.03347 * 24 11 10 42 42 H 1.08995 * 109.60704 * 293.36155 * 24 11 10 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8987 1.0258 0.0000 4 6 2.0489 -0.7366 1.2371 5 6 3.5224 -1.0162 1.0798 6 6 4.2433 -1.3753 2.2080 7 6 5.5937 -1.6478 2.1189 8 6 6.2347 -1.5634 0.8961 9 6 5.5251 -1.2046 -0.2294 10 6 4.1598 -0.9248 -0.1450 11 7 3.5003 -0.5610 -1.3181 12 6 4.0562 -1.2726 -2.4768 13 6 3.4998 -0.6625 -3.7648 14 6 4.1775 -1.3141 -4.9720 15 16 3.5198 -0.5918 -6.4957 16 6 4.4473 -1.4979 -7.6889 17 1 5.1631 -2.2397 -7.3667 18 6 4.2572 -1.2591 -9.0429 19 7 3.3844 -0.3554 -9.4357 20 14 5.2409 -2.2192 -10.3078 21 1 4.5026 -3.4540 -10.6757 22 1 5.4406 -1.3827 -11.5184 23 1 6.5613 -2.5841 -9.7349 24 6 2.0488 -0.7377 -1.2407 25 1 -0.3633 -1.0276 0.0133 26 1 -0.3633 0.5253 0.8834 27 1 -0.3633 0.5023 -0.8965 28 1 1.8892 -0.1188 2.1208 29 1 1.5116 -1.6782 1.3507 30 1 3.7449 -1.4426 3.1637 31 1 6.1488 -1.9266 3.0024 32 1 7.2907 -1.7781 0.8235 33 1 6.0282 -1.1390 -1.1827 34 1 3.7787 -2.3254 -2.4241 35 1 5.1424 -1.1825 -2.4717 36 1 2.4248 -0.8358 -3.8142 37 1 3.6957 0.4097 -3.7732 38 1 5.2525 -1.1407 -4.9226 39 1 3.9816 -2.3863 -4.9636 40 1 3.2519 -0.1882 -10.3819 41 1 1.5818 -0.3237 -2.1343 42 1 1.8131 -1.7991 -1.1632 RHF calculation, no. of doubly occupied orbitals= 52 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000080628361.mol2 42 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 06:31:16 Heat of formation + Delta-G solvation = 8.733499 kcal Electronic energy + Delta-G solvation = -20368.495404 eV Core-core repulsion = 17438.471027 eV Total energy + Delta-G solvation = -2930.024377 eV No. of doubly occupied orbitals = 52 Molecular weight (most abundant/longest-lived isotopes) = 291.135 amu Computer time = 9.37 seconds Orbital eigenvalues (eV) -40.75246 -37.26568 -35.74253 -32.74650 -32.41401 -31.42999 -29.75128 -26.97384 -26.45168 -25.54546 -24.32750 -22.26861 -21.95353 -20.55056 -19.47145 -17.57788 -17.08370 -16.09792 -15.98630 -15.29223 -14.89702 -14.80035 -14.29054 -14.07513 -13.90837 -13.65592 -13.50806 -13.39916 -12.87082 -12.61385 -12.32179 -12.15734 -11.99726 -11.77972 -11.57945 -11.35338 -11.07774 -10.99095 -10.86032 -10.79510 -10.66679 -10.52717 -10.23937 -9.93279 -9.51592 -9.06335 -8.80871 -8.31593 -7.67759 -6.53637 -6.23346 -3.93708 1.30943 1.36867 3.20476 3.21783 3.28745 3.43312 3.62789 3.86934 4.21918 4.43617 4.60029 4.65535 4.77641 4.96179 5.09972 5.12848 5.19742 5.25131 5.27063 5.32569 5.39075 5.41915 5.44381 5.50074 5.55450 5.58456 5.69718 5.76949 5.80456 5.87419 5.91648 5.98824 6.04614 6.13114 6.21522 6.29258 6.39300 6.50343 6.54368 6.68937 6.76440 7.04994 7.31006 7.60104 8.36137 9.23020 10.84853 Molecular weight = 291.14amu Principal moments of inertia in cm(-1) A = 0.023152 B = 0.003095 C = 0.002773 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1209.114596 B = 9043.769262 C =10095.457804 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.145 4.145 2 C -0.095 4.095 3 H 0.083 0.917 4 C -0.071 4.071 5 C -0.131 4.131 6 C -0.093 4.093 7 C -0.158 4.158 8 C -0.095 4.095 9 C -0.165 4.165 10 C 0.137 3.863 11 N -0.492 5.492 12 C 0.057 3.943 13 C -0.096 4.096 14 C -0.113 4.113 15 S -0.131 6.131 16 C -0.517 4.517 17 H 0.072 0.928 18 C 0.071 3.929 19 N -0.870 5.870 20 Si 0.918 3.082 21 H -0.277 1.277 22 H -0.282 1.282 23 H -0.272 1.272 24 C 0.059 3.941 25 H 0.055 0.945 26 H 0.058 0.942 27 H 0.061 0.939 28 H 0.074 0.926 29 H 0.072 0.928 30 H 0.118 0.882 31 H 0.117 0.883 32 H 0.120 0.880 33 H 0.129 0.871 34 H 0.045 0.955 35 H 0.087 0.913 36 H 0.066 0.934 37 H 0.076 0.924 38 H 0.061 0.939 39 H 0.059 0.941 40 H 0.267 0.733 41 H 0.092 0.908 42 H 0.045 0.955 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -1.294 -1.701 23.254 23.352 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.202 4.202 2 C -0.114 4.114 3 H 0.102 0.898 4 C -0.108 4.108 5 C -0.135 4.135 6 C -0.112 4.112 7 C -0.177 4.177 8 C -0.113 4.113 9 C -0.186 4.186 10 C 0.038 3.962 11 N -0.203 5.203 12 C -0.070 4.070 13 C -0.135 4.135 14 C -0.262 4.262 15 S 0.098 5.902 16 C -0.665 4.665 17 H 0.090 0.910 18 C -0.138 4.138 19 N -0.505 5.505 20 Si 0.745 3.255 21 H -0.203 1.203 22 H -0.207 1.207 23 H -0.197 1.197 24 C -0.067 4.067 25 H 0.074 0.926 26 H 0.077 0.923 27 H 0.080 0.920 28 H 0.092 0.908 29 H 0.090 0.910 30 H 0.136 0.864 31 H 0.135 0.865 32 H 0.138 0.862 33 H 0.147 0.853 34 H 0.063 0.937 35 H 0.105 0.895 36 H 0.085 0.915 37 H 0.095 0.905 38 H 0.080 0.920 39 H 0.078 0.922 40 H 0.077 0.923 41 H 0.110 0.890 42 H 0.064 0.936 Dipole moment (debyes) X Y Z Total from point charges -2.146 -0.301 22.761 22.864 hybrid contribution 1.538 -2.212 -0.573 2.755 sum -0.608 -2.513 22.187 22.337 Atomic orbital electron populations 1.21768 0.94158 1.02047 1.02260 1.21289 0.95834 1.00399 0.93841 0.89819 1.20575 0.91392 1.00404 0.98423 1.19505 0.95909 1.05477 0.92566 1.20898 0.94185 0.98755 0.97344 1.20926 0.94830 1.04307 0.97636 1.20930 0.99522 0.98439 0.92459 1.21261 0.93163 1.04530 0.99646 1.18680 0.92994 0.94541 0.90026 1.58046 1.05059 1.54955 1.02279 1.22495 1.00611 0.95399 0.88445 1.21334 1.00128 1.01067 0.90989 1.23220 1.02140 1.02051 0.98804 1.84631 1.56098 1.54282 0.95216 1.22693 1.26392 1.25144 0.92255 0.90956 1.25014 0.95532 0.95428 0.97807 1.70019 1.32925 1.31297 1.16291 0.86167 0.79966 0.79441 0.79972 1.20280 1.20744 1.19668 1.22300 0.85577 0.99309 0.99557 0.92557 0.92322 0.91972 0.90770 0.90984 0.86413 0.86478 0.86193 0.85297 0.93679 0.89490 0.91493 0.90511 0.92015 0.92218 0.92297 0.88962 0.93624 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -1.16 9.20 37.16 0.34 -0.81 16 2 C -0.09 -0.94 2.94 -90.40 -0.27 -1.20 16 3 H 0.08 0.91 8.14 -51.92 -0.42 0.49 16 4 C -0.07 -0.67 5.15 -27.81 -0.14 -0.81 16 5 C -0.13 -1.51 5.74 -104.38 -0.60 -2.11 16 6 C -0.09 -0.96 9.63 -39.51 -0.38 -1.34 16 7 C -0.16 -1.59 10.05 -39.62 -0.40 -1.99 16 8 C -0.09 -1.02 10.04 -39.71 -0.40 -1.42 16 9 C -0.17 -2.04 9.02 -39.22 -0.35 -2.39 16 10 C 0.14 1.77 5.83 -83.85 -0.49 1.28 16 11 N -0.49 -6.49 4.54 -171.29 -0.78 -7.27 16 12 C 0.06 0.79 4.55 -3.83 -0.02 0.77 16 13 C -0.10 -1.57 4.94 -26.73 -0.13 -1.70 16 14 C -0.11 -2.26 5.67 37.16 0.21 -2.05 16 15 S -0.13 -3.41 21.44 -107.50 -2.30 -5.71 16 16 C -0.52 -14.83 9.50 30.94 0.29 -14.53 16 17 H 0.07 2.01 7.80 -52.49 -0.41 1.60 16 18 C 0.07 2.03 5.49 -17.43 -0.10 1.93 16 19 N -0.87 -26.01 13.22 55.49 0.73 -25.28 16 20 Si 0.92 21.55 29.55 -169.99 -5.02 16.52 16 21 H -0.28 -6.37 7.11 56.52 0.40 -5.97 16 22 H -0.28 -6.49 7.11 56.52 0.40 -6.09 16 23 H -0.27 -6.24 7.11 56.52 0.40 -5.84 16 24 C 0.06 0.68 4.45 -3.88 -0.02 0.67 16 25 H 0.06 0.43 8.14 -51.93 -0.42 0.00 16 26 H 0.06 0.41 8.14 -51.92 -0.42 -0.02 16 27 H 0.06 0.50 8.14 -51.93 -0.42 0.08 16 28 H 0.07 0.60 8.14 -51.93 -0.42 0.18 16 29 H 0.07 0.63 8.09 -51.93 -0.42 0.21 16 30 H 0.12 0.94 8.06 -52.49 -0.42 0.52 16 31 H 0.12 0.92 8.06 -52.49 -0.42 0.49 16 32 H 0.12 1.05 8.06 -52.49 -0.42 0.62 16 33 H 0.13 1.54 5.72 -52.49 -0.30 1.24 16 34 H 0.04 0.62 8.14 -51.93 -0.42 0.19 16 35 H 0.09 1.16 5.51 -51.93 -0.29 0.88 16 36 H 0.07 1.08 6.80 -51.93 -0.35 0.72 16 37 H 0.08 1.31 8.14 -51.93 -0.42 0.88 16 38 H 0.06 1.22 8.14 -51.91 -0.42 0.80 16 39 H 0.06 1.18 8.14 -51.92 -0.42 0.76 16 40 H 0.27 7.44 8.31 -40.82 -0.34 7.10 16 41 H 0.09 1.10 6.59 -51.93 -0.34 0.76 16 42 H 0.05 0.53 8.11 -51.93 -0.42 0.11 16 LS Contribution 346.64 15.07 5.22 5.22 Total: -1.00 -31.15 346.64 -11.33 -42.48 By element: Atomic # 1 Polarization: 6.47 SS G_CDS: -6.74 Total: -0.27 kcal Atomic # 6 Polarization: -23.25 SS G_CDS: -2.44 Total: -25.70 kcal Atomic # 7 Polarization: -32.50 SS G_CDS: -0.04 Total: -32.55 kcal Atomic # 14 Polarization: 21.55 SS G_CDS: -5.02 Total: 16.52 kcal Atomic # 16 Polarization: -3.41 SS G_CDS: -2.30 Total: -5.71 kcal Total LS contribution 5.22 Total: 5.22 kcal Total: -31.15 -11.33 -42.48 kcal The number of atoms in the molecule is 42 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000080628361.mol2 42 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 51.215 kcal (2) G-P(sol) polarization free energy of solvation -31.150 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 20.065 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -11.332 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -42.482 kcal (6) G-S(sol) free energy of system = (1) + (5) 8.733 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 9.37 seconds