Wall clock time and date at job start Tue Mar 31 2020 06:35:08 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52993 * 1 3 3 H 1.09006 * 109.78906 * 2 1 4 4 S 1.81902 * 109.63329 * 120.49258 * 2 1 3 5 5 C 1.81899 * 101.91257 * 68.40179 * 4 2 1 6 6 C 1.53245 * 108.50364 * 51.30662 * 5 4 2 7 7 N 1.46467 * 109.86342 * 297.99292 * 6 5 4 8 8 C 1.46893 * 111.00377 * 197.76739 * 7 6 5 9 9 C 1.52992 * 109.47546 * 293.95519 * 8 7 6 10 10 C 1.50697 * 109.47567 * 180.02562 * 9 8 7 11 11 H 1.07996 * 119.99969 * 359.97438 * 10 9 8 12 12 C 1.37875 * 120.00241 * 180.02562 * 10 9 8 13 13 N 1.31512 * 119.99958 * 359.97438 * 12 10 9 14 14 Si 1.86804 * 120.00115 * 179.97438 * 12 10 9 15 15 H 1.48500 * 109.46791 * 359.97438 * 14 12 10 16 16 H 1.48501 * 109.46691 * 119.99851 * 14 12 10 17 17 H 1.48499 * 109.47004 * 239.99932 * 14 12 10 18 18 C 1.46469 * 112.55614 * 72.65841 * 7 6 5 19 19 H 1.08996 * 109.40610 * 47.46421 * 18 7 6 20 20 C 1.50701 * 109.40691 * 167.22630 * 18 7 6 21 21 C 1.38236 * 119.99694 * 39.72846 * 20 18 7 22 22 C 1.38236 * 119.99804 * 179.78776 * 21 20 18 23 23 C 1.38239 * 119.99997 * 0.43991 * 22 21 20 24 24 C 1.38233 * 119.99638 * 359.81418 * 23 22 21 25 25 C 1.38230 * 120.00178 * 219.99733 * 20 18 7 26 26 H 1.09002 * 109.47476 * 299.50241 * 1 2 3 27 27 H 1.09000 * 109.47646 * 59.50535 * 1 2 3 28 28 H 1.09006 * 109.46909 * 179.50890 * 1 2 3 29 29 H 1.08999 * 109.62879 * 171.01071 * 5 4 2 30 30 H 1.08994 * 109.63101 * 291.40178 * 5 4 2 31 31 H 1.09001 * 109.41098 * 58.11963 * 6 5 4 32 32 H 1.09003 * 109.40407 * 177.95895 * 6 5 4 33 33 H 1.09002 * 109.47122 * 53.95590 * 8 7 6 34 34 H 1.09004 * 109.47185 * 173.95144 * 8 7 6 35 35 H 1.09002 * 109.46969 * 300.00165 * 9 8 7 36 36 H 1.09004 * 109.47185 * 59.99625 * 9 8 7 37 37 H 0.96998 * 120.00268 * 180.02562 * 13 12 10 38 38 H 1.08000 * 120.00238 * 0.02562 * 21 20 18 39 39 H 1.07997 * 120.00177 * 180.27344 * 22 21 20 40 40 H 1.07998 * 120.00077 * 179.83095 * 23 22 21 41 41 H 1.08002 * 119.99783 * 180.02562 * 24 23 22 42 42 H 1.07999 * 120.00180 * 359.97438 * 25 20 18 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5299 0.0000 0.0000 3 1 1.8990 1.0257 0.0000 4 16 2.1411 -0.8694 1.4763 5 6 1.6502 -2.5865 1.1310 6 6 2.1486 -2.9627 -0.2684 7 7 1.5188 -2.0991 -1.2699 8 6 1.6326 -2.6814 -2.6136 9 6 3.1035 -2.7125 -3.0332 10 6 3.2201 -3.3093 -4.4121 11 1 2.3338 -3.6343 -4.9365 12 6 4.4585 -3.4413 -5.0037 13 7 5.5379 -3.0459 -4.3648 14 14 4.6031 -4.1817 -6.7126 15 1 3.2520 -4.5441 -7.2109 16 1 5.2207 -3.1911 -7.6305 17 1 5.4517 -5.3990 -6.6544 18 6 2.0449 -0.7324 -1.2438 19 1 3.1341 -0.7640 -1.2205 20 6 1.5932 0.0017 -2.4800 21 6 0.3102 -0.1799 -2.9615 22 6 -0.1056 0.4968 -4.0930 23 6 0.7646 1.3481 -4.7481 24 6 2.0492 1.5256 -4.2694 25 6 2.4635 0.8522 -3.1355 26 1 -0.3634 0.5061 0.8944 27 1 -0.3634 0.5215 -0.8855 28 1 -0.3633 -1.0277 -0.0088 29 1 2.0978 -3.2509 1.8701 30 1 0.5644 -2.6721 1.1716 31 1 3.2307 -2.8395 -0.3129 32 1 1.8936 -4.0019 -0.4764 33 1 1.2358 -3.6966 -2.6045 34 1 1.0656 -2.0762 -3.3211 35 1 3.5002 -1.6973 -3.0424 36 1 3.6704 -3.3177 -2.3258 37 1 6.4091 -3.1384 -4.7812 38 1 -0.3686 -0.8475 -2.4516 39 1 -1.1093 0.3584 -4.4667 40 1 0.4406 1.8747 -5.6336 41 1 2.7289 2.1910 -4.7810 42 1 3.4672 0.9911 -2.7615 RHF calculation, no. of doubly occupied orbitals= 52 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000118422159.mol2 42 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 06:35:08 Heat of formation + Delta-G solvation = 29.396551 kcal Electronic energy + Delta-G solvation = -22218.432986 eV Core-core repulsion = 19289.304627 eV Total energy + Delta-G solvation = -2929.128360 eV No. of doubly occupied orbitals = 52 Molecular weight (most abundant/longest-lived isotopes) = 291.135 amu Computer time = 5.18 seconds Orbital eigenvalues (eV) -39.96607 -37.42402 -33.85365 -32.89904 -31.57082 -30.67188 -29.75688 -28.35460 -26.13477 -23.93989 -23.05858 -22.08943 -21.68668 -20.97874 -19.03335 -16.57330 -16.53130 -16.13472 -15.34175 -15.22109 -14.83941 -14.57928 -14.50339 -13.85676 -13.67515 -13.25928 -12.99342 -12.74377 -12.47515 -12.34962 -12.09322 -11.96313 -11.72882 -11.67585 -11.25672 -11.12967 -10.95414 -10.84617 -10.71445 -10.59313 -10.26886 -9.90052 -9.82097 -9.44611 -9.14860 -8.49211 -8.33490 -8.24557 -7.69334 -7.46164 -6.02627 -4.04698 1.68870 1.81094 1.99907 2.68124 3.28095 3.35970 3.39837 4.09966 4.26992 4.44871 5.01350 5.02965 5.14023 5.24450 5.29063 5.33672 5.35565 5.41284 5.44771 5.53624 5.57826 5.85447 5.88225 5.95208 5.99538 6.04375 6.10848 6.22290 6.22872 6.35183 6.40065 6.45374 6.64141 6.81656 6.87641 6.88948 6.96904 7.36598 7.41033 7.45640 7.64668 7.80749 7.97328 8.40101 9.01695 9.59327 11.08398 Molecular weight = 291.14amu Principal moments of inertia in cm(-1) A = 0.014101 B = 0.006581 C = 0.005076 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1985.257839 B = 4253.549579 C = 5515.011446 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.139 4.139 2 C -0.031 4.031 3 H 0.104 0.896 4 S -0.284 6.284 5 C -0.070 4.070 6 C 0.057 3.943 7 N -0.544 5.544 8 C 0.050 3.950 9 C -0.005 4.005 10 C -0.514 4.514 11 H 0.054 0.946 12 C 0.059 3.941 13 N -0.894 5.894 14 Si 0.888 3.112 15 H -0.273 1.273 16 H -0.284 1.284 17 H -0.284 1.284 18 C 0.132 3.868 19 H 0.066 0.934 20 C -0.063 4.063 21 C -0.092 4.092 22 C -0.132 4.132 23 C -0.122 4.122 24 C -0.121 4.121 25 C -0.099 4.099 26 H 0.053 0.947 27 H 0.067 0.933 28 H 0.071 0.929 29 H 0.101 0.899 30 H 0.087 0.913 31 H 0.054 0.946 32 H 0.084 0.916 33 H 0.060 0.940 34 H 0.078 0.922 35 H 0.022 0.978 36 H 0.012 0.988 37 H 0.259 0.741 38 H 0.129 0.871 39 H 0.116 0.884 40 H 0.114 0.886 41 H 0.116 0.884 42 H 0.118 0.882 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -10.213 7.038 7.118 14.300 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.197 4.197 2 C -0.160 4.160 3 H 0.122 0.878 4 S -0.056 6.056 5 C -0.219 4.219 6 C -0.073 4.073 7 N -0.268 5.268 8 C -0.076 4.076 9 C -0.043 4.043 10 C -0.553 4.553 11 H 0.072 0.928 12 C -0.142 4.142 13 N -0.533 5.533 14 Si 0.716 3.284 15 H -0.197 1.197 16 H -0.210 1.210 17 H -0.211 1.211 18 C 0.022 3.978 19 H 0.084 0.916 20 C -0.065 4.065 21 C -0.110 4.110 22 C -0.150 4.150 23 C -0.140 4.140 24 C -0.139 4.139 25 C -0.118 4.118 26 H 0.072 0.928 27 H 0.086 0.914 28 H 0.090 0.910 29 H 0.119 0.881 30 H 0.106 0.894 31 H 0.072 0.928 32 H 0.102 0.898 33 H 0.079 0.921 34 H 0.097 0.903 35 H 0.040 0.960 36 H 0.031 0.969 37 H 0.069 0.931 38 H 0.146 0.854 39 H 0.134 0.866 40 H 0.132 0.868 41 H 0.135 0.865 42 H 0.136 0.864 Dipole moment (debyes) X Y Z Total from point charges -9.963 7.468 8.182 14.899 hybrid contribution 0.667 -1.040 -2.298 2.609 sum -9.296 6.428 5.884 12.742 Atomic orbital electron populations 1.22037 0.92704 1.03320 1.01662 1.23237 0.99526 1.00359 0.92884 0.87781 1.86716 1.79372 1.07947 1.31548 1.23526 1.04207 0.93968 1.00158 1.22144 0.98077 0.97566 0.89500 1.61552 1.57018 1.00843 1.07350 1.22593 1.00285 0.98222 0.86492 1.19622 0.90592 0.97512 0.96539 1.21131 0.92572 1.40413 1.01194 0.92795 1.24978 0.95985 0.95619 0.97605 1.69967 0.98026 1.47648 1.37652 0.86600 0.78101 0.78921 0.84798 1.19743 1.21040 1.21064 1.20594 0.97920 0.88653 0.90609 0.91608 1.19534 0.94165 0.96833 0.95994 1.21012 0.95738 0.98246 0.96021 1.21052 0.99530 0.97966 0.96446 1.21035 0.94187 0.99194 0.99571 1.20997 0.96061 1.00292 0.96525 1.20974 0.98912 0.96356 0.95528 0.92775 0.91432 0.91047 0.88111 0.89425 0.92780 0.89802 0.92147 0.90344 0.96022 0.96950 0.93145 0.85364 0.86636 0.86786 0.86547 0.86422 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -1.73 8.00 37.15 0.30 -1.44 16 2 C -0.03 -0.44 2.97 -26.61 -0.08 -0.52 16 3 H 0.10 1.43 8.14 -51.93 -0.42 1.01 16 4 S -0.28 -4.12 21.80 -107.50 -2.34 -6.46 16 5 C -0.07 -0.92 6.33 37.28 0.24 -0.69 16 6 C 0.06 0.90 4.67 -3.93 -0.02 0.88 16 7 N -0.54 -9.04 3.15 -228.44 -0.72 -9.76 16 8 C 0.05 1.00 4.51 -3.83 -0.02 0.98 16 9 C 0.00 -0.11 4.31 -27.89 -0.12 -0.23 16 10 C -0.51 -14.30 9.11 -34.44 -0.31 -14.61 16 11 H 0.05 1.48 7.74 -52.49 -0.41 1.07 16 12 C 0.06 1.69 5.46 -17.82 -0.10 1.59 16 13 N -0.89 -26.59 13.29 55.43 0.74 -25.85 16 14 Si 0.89 21.67 29.54 -169.99 -5.02 16.65 16 15 H -0.27 -6.53 7.11 56.52 0.40 -6.13 16 16 H -0.28 -6.90 7.11 56.52 0.40 -6.50 16 17 H -0.28 -6.88 7.11 56.52 0.40 -6.48 16 18 C 0.13 2.17 1.12 -68.97 -0.08 2.10 16 19 H 0.07 1.28 6.96 -51.93 -0.36 0.91 16 20 C -0.06 -1.04 3.00 -104.62 -0.31 -1.35 16 21 C -0.09 -1.40 4.91 -39.58 -0.19 -1.59 16 22 C -0.13 -1.87 10.05 -39.58 -0.40 -2.27 16 23 C -0.12 -1.74 10.05 -39.58 -0.40 -2.13 16 24 C -0.12 -1.85 10.05 -39.59 -0.40 -2.25 16 25 C -0.10 -1.66 9.25 -39.59 -0.37 -2.03 16 26 H 0.05 0.62 8.14 -51.93 -0.42 0.20 16 27 H 0.07 0.84 5.73 -51.93 -0.30 0.54 16 28 H 0.07 0.93 6.69 -51.93 -0.35 0.59 16 29 H 0.10 1.18 8.14 -51.93 -0.42 0.75 16 30 H 0.09 1.09 7.57 -51.93 -0.39 0.69 16 31 H 0.05 0.99 7.17 -51.93 -0.37 0.62 16 32 H 0.08 1.29 7.82 -51.93 -0.41 0.89 16 33 H 0.06 1.20 7.93 -51.93 -0.41 0.79 16 34 H 0.08 1.59 4.86 -51.93 -0.25 1.33 16 35 H 0.02 0.57 5.92 -51.93 -0.31 0.27 16 36 H 0.01 0.33 6.97 -51.93 -0.36 -0.03 16 37 H 0.26 7.31 8.31 -40.82 -0.34 6.97 16 38 H 0.13 1.87 6.73 -52.49 -0.35 1.52 16 39 H 0.12 1.37 8.06 -52.49 -0.42 0.94 16 40 H 0.11 1.35 8.06 -52.49 -0.42 0.92 16 41 H 0.12 1.56 8.06 -52.49 -0.42 1.14 16 42 H 0.12 1.96 8.04 -52.49 -0.42 1.53 16 LS Contribution 329.92 15.07 4.97 4.97 Total: -1.00 -29.47 329.92 -11.00 -40.47 By element: Atomic # 1 Polarization: 9.92 SS G_CDS: -6.36 Total: 3.55 kcal Atomic # 6 Polarization: -21.32 SS G_CDS: -2.26 Total: -23.57 kcal Atomic # 7 Polarization: -35.63 SS G_CDS: 0.02 Total: -35.61 kcal Atomic # 14 Polarization: 21.67 SS G_CDS: -5.02 Total: 16.65 kcal Atomic # 16 Polarization: -4.12 SS G_CDS: -2.34 Total: -6.46 kcal Total LS contribution 4.97 Total: 4.97 kcal Total: -29.47 -11.00 -40.47 kcal The number of atoms in the molecule is 42 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000118422159.mol2 42 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 69.865 kcal (2) G-P(sol) polarization free energy of solvation -29.470 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 40.395 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -10.999 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -40.468 kcal (6) G-S(sol) free energy of system = (1) + (5) 29.397 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 5.18 seconds