Wall clock time and date at job start Tue Mar 31 2020 06:35:03 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52993 * 1 3 3 H 1.09006 * 109.78906 * 2 1 4 4 S 1.81902 * 109.63329 * 120.49258 * 2 1 3 5 5 C 1.81899 * 101.91257 * 68.40179 * 4 2 1 6 6 C 1.53245 * 108.50364 * 51.30662 * 5 4 2 7 7 N 1.46467 * 109.86342 * 297.99292 * 6 5 4 8 8 C 1.46893 * 111.00377 * 197.76739 * 7 6 5 9 9 C 1.52992 * 109.47546 * 293.95519 * 8 7 6 10 10 C 1.50697 * 109.47567 * 180.02562 * 9 8 7 11 11 H 1.07996 * 119.99969 * 359.97438 * 10 9 8 12 12 C 1.37875 * 120.00241 * 180.02562 * 10 9 8 13 13 N 1.31512 * 119.99958 * 359.97438 * 12 10 9 14 14 Si 1.86804 * 120.00115 * 179.97438 * 12 10 9 15 15 H 1.48500 * 109.46791 * 359.97438 * 14 12 10 16 16 H 1.48501 * 109.46691 * 119.99851 * 14 12 10 17 17 H 1.48499 * 109.47004 * 239.99932 * 14 12 10 18 18 C 1.46469 * 112.55614 * 72.65841 * 7 6 5 19 19 H 1.08996 * 109.40610 * 47.46421 * 18 7 6 20 20 C 1.50701 * 109.40691 * 167.22630 * 18 7 6 21 21 C 1.38236 * 119.99694 * 39.72846 * 20 18 7 22 22 C 1.38236 * 119.99804 * 179.78776 * 21 20 18 23 23 C 1.38239 * 119.99997 * 0.43991 * 22 21 20 24 24 C 1.38233 * 119.99638 * 359.81418 * 23 22 21 25 25 C 1.38230 * 120.00178 * 219.99733 * 20 18 7 26 26 H 1.09002 * 109.47476 * 299.50241 * 1 2 3 27 27 H 1.09000 * 109.47646 * 59.50535 * 1 2 3 28 28 H 1.09006 * 109.46909 * 179.50890 * 1 2 3 29 29 H 1.08999 * 109.62879 * 171.01071 * 5 4 2 30 30 H 1.08994 * 109.63101 * 291.40178 * 5 4 2 31 31 H 1.09001 * 109.41098 * 58.11963 * 6 5 4 32 32 H 1.09003 * 109.40407 * 177.95895 * 6 5 4 33 33 H 1.09002 * 109.47122 * 53.95590 * 8 7 6 34 34 H 1.09004 * 109.47185 * 173.95144 * 8 7 6 35 35 H 1.09002 * 109.46969 * 300.00165 * 9 8 7 36 36 H 1.09004 * 109.47185 * 59.99625 * 9 8 7 37 37 H 0.96998 * 120.00268 * 180.02562 * 13 12 10 38 38 H 1.08000 * 120.00238 * 0.02562 * 21 20 18 39 39 H 1.07997 * 120.00177 * 180.27344 * 22 21 20 40 40 H 1.07998 * 120.00077 * 179.83095 * 23 22 21 41 41 H 1.08002 * 119.99783 * 180.02562 * 24 23 22 42 42 H 1.07999 * 120.00180 * 359.97438 * 25 20 18 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5299 0.0000 0.0000 3 1 1.8990 1.0257 0.0000 4 16 2.1411 -0.8694 1.4763 5 6 1.6502 -2.5865 1.1310 6 6 2.1486 -2.9627 -0.2684 7 7 1.5188 -2.0991 -1.2699 8 6 1.6326 -2.6814 -2.6136 9 6 3.1035 -2.7125 -3.0332 10 6 3.2201 -3.3093 -4.4121 11 1 2.3338 -3.6343 -4.9365 12 6 4.4585 -3.4413 -5.0037 13 7 5.5379 -3.0459 -4.3648 14 14 4.6031 -4.1817 -6.7126 15 1 3.2520 -4.5441 -7.2109 16 1 5.2207 -3.1911 -7.6305 17 1 5.4517 -5.3990 -6.6544 18 6 2.0449 -0.7324 -1.2438 19 1 3.1341 -0.7640 -1.2205 20 6 1.5932 0.0017 -2.4800 21 6 0.3102 -0.1799 -2.9615 22 6 -0.1056 0.4968 -4.0930 23 6 0.7646 1.3481 -4.7481 24 6 2.0492 1.5256 -4.2694 25 6 2.4635 0.8522 -3.1355 26 1 -0.3634 0.5061 0.8944 27 1 -0.3634 0.5215 -0.8855 28 1 -0.3633 -1.0277 -0.0088 29 1 2.0978 -3.2509 1.8701 30 1 0.5644 -2.6721 1.1716 31 1 3.2307 -2.8395 -0.3129 32 1 1.8936 -4.0019 -0.4764 33 1 1.2358 -3.6966 -2.6045 34 1 1.0656 -2.0762 -3.3211 35 1 3.5002 -1.6973 -3.0424 36 1 3.6704 -3.3177 -2.3258 37 1 6.4091 -3.1384 -4.7812 38 1 -0.3686 -0.8475 -2.4516 39 1 -1.1093 0.3584 -4.4667 40 1 0.4406 1.8747 -5.6336 41 1 2.7289 2.1910 -4.7810 42 1 3.4672 0.9911 -2.7615 RHF calculation, no. of doubly occupied orbitals= 52 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000118422159.mol2 42 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 06:35:03 Heat of formation + Delta-G solvation = 14.666471 kcal Electronic energy + Delta-G solvation = -22219.071730 eV Core-core repulsion = 19289.304627 eV Total energy + Delta-G solvation = -2929.767104 eV No. of doubly occupied orbitals = 52 Molecular weight (most abundant/longest-lived isotopes) = 291.135 amu Computer time = 3.33 seconds Orbital eigenvalues (eV) -41.27508 -38.71864 -35.56167 -34.49475 -33.07837 -31.86158 -31.10185 -29.95043 -27.55555 -25.69835 -24.41354 -23.29311 -22.98943 -22.52496 -20.39355 -18.62943 -17.85343 -17.29889 -16.71311 -16.65257 -16.49835 -16.04993 -15.82947 -15.14154 -14.92528 -14.65248 -14.35884 -14.19024 -13.90579 -13.80663 -13.64798 -13.37222 -13.00892 -12.96693 -12.80604 -12.69312 -12.57112 -12.39312 -12.02594 -11.95974 -11.77939 -11.64706 -11.40187 -11.26529 -10.63234 -10.55806 -9.65297 -9.49144 -9.21990 -8.66600 -8.20646 -6.31307 0.49089 0.60431 0.84416 1.35509 1.36444 1.48918 1.53162 2.37753 2.80132 2.99118 3.12614 3.75389 3.79902 3.91816 4.04962 4.14372 4.22067 4.25603 4.26905 4.36536 4.38765 4.58452 4.62930 4.71111 4.74911 4.77585 4.84624 4.95106 5.01021 5.03831 5.09718 5.16315 5.24850 5.39897 5.48269 5.55534 5.62656 5.69365 5.70506 5.77610 5.98856 6.16808 6.22545 6.31310 6.85942 7.37513 8.90213 Molecular weight = 291.14amu Principal moments of inertia in cm(-1) A = 0.014101 B = 0.006581 C = 0.005076 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1985.257839 B = 4253.549579 C = 5515.011446 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.128 4.128 2 C -0.024 4.024 3 H 0.105 0.895 4 S -0.305 6.305 5 C -0.056 4.056 6 C 0.055 3.945 7 N -0.524 5.524 8 C 0.066 3.934 9 C 0.009 3.991 10 C -0.531 4.531 11 H 0.058 0.942 12 C 0.004 3.996 13 N -0.931 5.931 14 Si 0.957 3.043 15 H -0.260 1.260 16 H -0.281 1.281 17 H -0.280 1.280 18 C 0.138 3.862 19 H 0.023 0.977 20 C -0.076 4.076 21 C -0.097 4.097 22 C -0.129 4.129 23 C -0.123 4.123 24 C -0.131 4.131 25 C -0.128 4.128 26 H 0.068 0.932 27 H 0.071 0.929 28 H 0.069 0.931 29 H 0.121 0.879 30 H 0.107 0.893 31 H 0.020 0.980 32 H 0.091 0.909 33 H 0.065 0.935 34 H 0.082 0.918 35 H -0.005 1.005 36 H -0.019 1.019 37 H 0.260 0.740 38 H 0.138 0.862 39 H 0.147 0.853 40 H 0.144 0.856 41 H 0.130 0.870 42 H 0.101 0.899 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -12.778 6.881 6.344 15.839 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.187 4.187 2 C -0.153 4.153 3 H 0.123 0.877 4 S -0.077 6.077 5 C -0.204 4.204 6 C -0.074 4.074 7 N -0.247 5.247 8 C -0.061 4.061 9 C -0.029 4.029 10 C -0.570 4.570 11 H 0.076 0.924 12 C -0.194 4.194 13 N -0.572 5.572 14 Si 0.782 3.218 15 H -0.184 1.184 16 H -0.207 1.207 17 H -0.206 1.206 18 C 0.028 3.972 19 H 0.041 0.959 20 C -0.078 4.078 21 C -0.115 4.115 22 C -0.147 4.147 23 C -0.141 4.141 24 C -0.149 4.149 25 C -0.147 4.147 26 H 0.087 0.913 27 H 0.090 0.910 28 H 0.088 0.912 29 H 0.139 0.861 30 H 0.125 0.875 31 H 0.038 0.962 32 H 0.109 0.891 33 H 0.083 0.917 34 H 0.100 0.900 35 H 0.014 0.986 36 H 0.000 1.000 37 H 0.069 0.931 38 H 0.156 0.844 39 H 0.165 0.835 40 H 0.162 0.838 41 H 0.148 0.852 42 H 0.119 0.881 Dipole moment (debyes) X Y Z Total from point charges -12.544 7.315 7.424 16.309 hybrid contribution 1.521 -0.960 -2.049 2.726 sum -11.022 6.356 5.375 13.812 Atomic orbital electron populations 1.21965 0.90695 1.03460 1.02575 1.23201 1.00958 0.99864 0.91246 0.87714 1.86804 1.80131 1.09191 1.31527 1.23507 1.05341 0.93139 0.98419 1.22192 0.96167 0.97989 0.91099 1.61626 1.56381 1.00921 1.05794 1.22326 0.96592 0.98832 0.88345 1.19436 0.93512 0.94992 0.94958 1.21562 0.92815 1.40244 1.02367 0.92375 1.25877 0.95668 0.96054 1.01804 1.70109 0.98592 1.48921 1.39579 0.85521 0.78577 0.78053 0.79683 1.18417 1.20665 1.20555 1.20486 0.95489 0.88795 0.92404 0.95876 1.19568 0.94989 0.97148 0.96121 1.21140 0.95073 0.98681 0.96636 1.21453 1.00872 0.96837 0.95561 1.21415 0.93427 0.98971 1.00277 1.21260 0.97267 1.00350 0.96065 1.21059 0.98650 0.97980 0.96967 0.91289 0.91026 0.91180 0.86121 0.87490 0.96152 0.89065 0.91658 0.89991 0.98620 1.00034 0.93079 0.84436 0.83525 0.83833 0.85237 0.88109 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.13 -2.96 8.00 71.98 0.58 -2.39 16 2 C -0.02 -0.67 2.97 30.68 0.09 -0.58 16 3 H 0.10 2.92 8.14 -2.38 -0.02 2.90 16 4 S -0.30 -8.72 21.80 -56.49 -1.23 -9.95 16 5 C -0.06 -1.40 6.33 72.06 0.46 -0.95 16 6 C 0.06 1.77 4.67 86.47 0.40 2.17 16 7 N -0.52 -17.50 3.15 -876.65 -2.76 -20.26 16 8 C 0.07 2.64 4.51 86.30 0.39 3.03 16 9 C 0.01 0.48 4.31 29.84 0.13 0.61 16 10 C -0.53 -29.96 9.11 25.60 0.23 -29.72 16 11 H 0.06 3.16 7.74 -2.91 -0.02 3.14 16 12 C 0.00 0.21 5.46 84.65 0.46 0.68 16 13 N -0.93 -57.09 13.29 21.45 0.28 -56.80 16 14 Si 0.96 44.53 29.54 68.60 2.03 46.56 16 15 H -0.26 -11.50 7.11 99.48 0.71 -10.79 16 16 H -0.28 -12.84 7.11 99.48 0.71 -12.14 16 17 H -0.28 -12.74 7.11 99.48 0.71 -12.03 16 18 C 0.14 4.71 1.12 44.34 0.05 4.76 16 19 H 0.02 0.98 6.96 -2.39 -0.02 0.97 16 20 C -0.08 -2.55 3.00 -19.87 -0.06 -2.61 16 21 C -0.10 -2.81 4.91 22.27 0.11 -2.70 16 22 C -0.13 -3.33 10.05 22.27 0.22 -3.11 16 23 C -0.12 -3.24 10.05 22.27 0.22 -3.01 16 24 C -0.13 -4.01 10.05 22.27 0.22 -3.78 16 25 C -0.13 -4.48 9.25 22.27 0.21 -4.28 16 26 H 0.07 1.41 8.14 -2.39 -0.02 1.39 16 27 H 0.07 1.62 5.73 -2.39 -0.01 1.60 16 28 H 0.07 1.65 6.69 -2.38 -0.02 1.63 16 29 H 0.12 2.59 8.14 -2.39 -0.02 2.57 16 30 H 0.11 2.35 7.57 -2.39 -0.02 2.34 16 31 H 0.02 0.79 7.17 -2.39 -0.02 0.77 16 32 H 0.09 2.78 7.82 -2.39 -0.02 2.76 16 33 H 0.06 2.56 7.93 -2.39 -0.02 2.54 16 34 H 0.08 3.26 4.86 -2.39 -0.01 3.25 16 35 H 0.00 -0.26 5.92 -2.39 -0.01 -0.27 16 36 H -0.02 -1.07 6.97 -2.39 -0.02 -1.09 16 37 H 0.26 15.08 8.31 -92.71 -0.77 14.31 16 38 H 0.14 3.69 6.73 -2.91 -0.02 3.67 16 39 H 0.15 2.84 8.06 -2.91 -0.02 2.82 16 40 H 0.14 2.89 8.06 -2.91 -0.02 2.87 16 41 H 0.13 3.45 8.06 -2.91 -0.02 3.43 16 42 H 0.10 3.72 8.04 -2.91 -0.02 3.69 16 Total: -1.00 -65.01 329.92 3.03 -61.98 By element: Atomic # 1 Polarization: 19.35 SS G_CDS: 0.99 Total: 20.34 kcal Atomic # 6 Polarization: -45.59 SS G_CDS: 3.72 Total: -41.87 kcal Atomic # 7 Polarization: -74.59 SS G_CDS: -2.48 Total: -77.06 kcal Atomic # 14 Polarization: 44.53 SS G_CDS: 2.03 Total: 46.56 kcal Atomic # 16 Polarization: -8.72 SS G_CDS: -1.23 Total: -9.95 kcal Total: -65.01 3.03 -61.98 kcal The number of atoms in the molecule is 42 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000118422159.mol2 42 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 76.651 kcal (2) G-P(sol) polarization free energy of solvation -65.012 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 11.639 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.027 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -61.985 kcal (6) G-S(sol) free energy of system = (1) + (5) 14.666 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 3.33 seconds