Wall clock time and date at job start Tue Mar 31 2020 06:35:35 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53000 * 1 3 3 H 1.09004 * 109.62771 * 2 1 4 4 S 1.81898 * 109.62980 * 120.59552 * 2 1 3 5 5 C 1.81896 * 101.91519 * 171.01309 * 4 2 1 6 6 C 1.53254 * 108.50224 * 308.69435 * 5 4 2 7 7 N 1.46509 * 109.79500 * 62.03257 * 6 5 4 8 8 C 1.46897 * 110.95399 * 162.16948 * 7 6 5 9 9 C 1.52998 * 109.47203 * 295.91955 * 8 7 6 10 10 C 1.50701 * 109.47347 * 180.02562 * 9 8 7 11 11 H 1.08005 * 120.00026 * 359.97438 * 10 9 8 12 12 C 1.37877 * 120.00038 * 180.02562 * 10 9 8 13 13 N 1.31511 * 120.00295 * 359.97438 * 12 10 9 14 14 Si 1.86808 * 119.99716 * 179.97438 * 12 10 9 15 15 H 1.48490 * 109.47265 * 59.99652 * 14 12 10 16 16 H 1.48497 * 109.46841 * 179.97438 * 14 12 10 17 17 H 1.48497 * 109.46943 * 299.99321 * 14 12 10 18 18 C 1.46469 * 112.53450 * 287.22722 * 7 6 5 19 19 H 1.09004 * 109.40747 * 312.69683 * 18 7 6 20 20 C 1.50700 * 109.40465 * 192.85727 * 18 7 6 21 21 C 1.38234 * 120.00260 * 139.83909 * 20 18 7 22 22 C 1.38234 * 120.00240 * 179.97438 * 21 20 18 23 23 C 1.38233 * 120.00037 * 0.26327 * 22 21 20 24 24 C 1.38238 * 119.99752 * 359.47832 * 23 22 21 25 25 C 1.38234 * 120.00033 * 0.49775 * 24 23 22 26 26 H 1.08998 * 109.46973 * 180.39039 * 1 2 3 27 27 H 1.09001 * 109.47497 * 300.39525 * 1 2 3 28 28 H 1.09001 * 109.47046 * 60.39150 * 1 2 3 29 29 H 1.09007 * 109.63247 * 68.39487 * 5 4 2 30 30 H 1.08993 * 109.63368 * 188.99387 * 5 4 2 31 31 H 1.08999 * 109.40599 * 182.12100 * 6 5 4 32 32 H 1.09004 * 109.40662 * 301.96186 * 6 5 4 33 33 H 1.09002 * 109.46834 * 55.91472 * 8 7 6 34 34 H 1.08999 * 109.47397 * 175.91460 * 8 7 6 35 35 H 1.09002 * 109.46830 * 299.99519 * 9 8 7 36 36 H 1.08999 * 109.47349 * 59.99475 * 9 8 7 37 37 H 0.96998 * 120.00435 * 180.02562 * 13 12 10 38 38 H 1.07999 * 119.99751 * 359.97438 * 21 20 18 39 39 H 1.08002 * 119.99744 * 179.97438 * 22 21 20 40 40 H 1.07998 * 120.00395 * 179.72811 * 23 22 21 41 41 H 1.07999 * 119.99934 * 180.25938 * 24 23 22 42 42 H 1.08001 * 120.00294 * 179.76453 * 25 24 23 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8962 1.0267 0.0000 4 16 2.1411 -0.8720 1.4747 5 6 3.9230 -0.9908 1.1294 6 6 4.1084 -1.5846 -0.2712 7 7 3.5089 -0.6962 -1.2701 8 6 4.0196 -0.9967 -2.6143 9 6 5.5216 -0.7104 -2.6651 10 6 6.0454 -1.0181 -4.0442 11 1 5.3741 -1.3819 -4.8081 12 6 7.3818 -0.8361 -4.3306 13 7 8.1993 -0.3936 -3.4004 14 14 8.0311 -1.2182 -6.0400 15 1 7.3316 -0.3682 -7.0366 16 1 9.4890 -0.9402 -6.0892 17 1 7.7888 -2.6495 -6.3530 18 6 2.0448 -0.7302 -1.2450 19 1 1.7069 -1.7663 -1.2229 20 6 1.5071 -0.0545 -2.4801 21 6 0.4151 -0.5871 -3.1395 22 6 -0.0785 0.0330 -4.2720 23 6 0.5232 1.1827 -4.7484 24 6 1.6119 1.7184 -4.0859 25 6 2.1052 1.0986 -2.9531 26 1 -0.3633 -1.0276 0.0070 27 1 -0.3634 0.5199 0.8864 28 1 -0.3633 0.5077 -0.8935 29 1 4.3706 0.0024 1.1682 30 1 4.3967 -1.6382 1.8672 31 1 5.1725 -1.6974 -0.4788 32 1 3.6248 -2.5604 -0.3178 33 1 3.8420 -2.0474 -2.8439 34 1 3.5059 -0.3731 -3.3460 35 1 5.6992 0.3403 -2.4355 36 1 6.0353 -1.3340 -1.9334 37 1 9.1394 -0.2653 -3.6019 38 1 -0.0524 -1.4878 -2.7698 39 1 -0.9314 -0.3835 -4.7874 40 1 0.1403 1.6648 -5.6357 41 1 2.0794 2.6190 -4.4556 42 1 2.9581 1.5149 -2.4377 RHF calculation, no. of doubly occupied orbitals= 52 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000118422165.mol2 42 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 06:35:35 Heat of formation + Delta-G solvation = 27.036177 kcal Electronic energy + Delta-G solvation = -21692.097650 eV Core-core repulsion = 18762.866937 eV Total energy + Delta-G solvation = -2929.230713 eV No. of doubly occupied orbitals = 52 Molecular weight (most abundant/longest-lived isotopes) = 291.135 amu Computer time = 0.08 seconds Orbital eigenvalues (eV) -39.95038 -37.45519 -34.24058 -32.98785 -31.49053 -30.67525 -30.20351 -28.66400 -25.93886 -24.00087 -22.84653 -22.55428 -21.82952 -20.26632 -19.63581 -17.17103 -16.39663 -16.22257 -15.47558 -15.10152 -14.74399 -14.57425 -14.37413 -14.33935 -13.92165 -13.57225 -13.14833 -12.95467 -12.47021 -12.41159 -12.24233 -12.05333 -11.92793 -11.70218 -11.33039 -11.13880 -11.04795 -10.92286 -10.80669 -10.60318 -10.51523 -9.88912 -9.67308 -9.34366 -9.17177 -8.69068 -8.44960 -8.31746 -7.90798 -7.54321 -6.02980 -4.05197 1.47688 1.60092 1.91407 2.65469 3.31251 3.35815 3.38233 3.92401 4.09866 4.45587 4.85039 4.90439 5.01869 5.08220 5.16090 5.24718 5.31032 5.32990 5.33748 5.43845 5.54610 5.57910 5.69202 5.72158 5.80397 5.96475 6.03745 6.10634 6.12853 6.13856 6.25686 6.32718 6.46680 6.61161 6.71992 6.77988 6.94493 7.17588 7.35028 7.47949 7.73282 7.82716 8.01958 8.39657 9.01239 9.58690 11.08244 Molecular weight = 291.14amu Principal moments of inertia in cm(-1) A = 0.013571 B = 0.005817 C = 0.004315 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2062.762834 B = 4812.462087 C = 6487.033634 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.132 4.132 2 C -0.030 4.030 3 H 0.095 0.905 4 S -0.288 6.288 5 C -0.069 4.069 6 C 0.053 3.947 7 N -0.544 5.544 8 C 0.056 3.944 9 C 0.031 3.969 10 C -0.521 4.521 11 H 0.052 0.948 12 C 0.060 3.940 13 N -0.893 5.893 14 Si 0.891 3.109 15 H -0.277 1.277 16 H -0.287 1.287 17 H -0.277 1.277 18 C 0.130 3.870 19 H 0.054 0.946 20 C -0.073 4.073 21 C -0.115 4.115 22 C -0.127 4.127 23 C -0.121 4.121 24 C -0.123 4.123 25 C -0.083 4.083 26 H 0.062 0.938 27 H 0.062 0.938 28 H 0.073 0.927 29 H 0.092 0.908 30 H 0.103 0.897 31 H 0.104 0.896 32 H 0.040 0.960 33 H 0.018 0.982 34 H 0.079 0.921 35 H 0.023 0.977 36 H 0.016 0.984 37 H 0.261 0.739 38 H 0.116 0.884 39 H 0.117 0.883 40 H 0.117 0.883 41 H 0.121 0.879 42 H 0.133 0.867 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -15.730 1.457 4.766 16.501 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.191 4.191 2 C -0.159 4.159 3 H 0.114 0.886 4 S -0.060 6.060 5 C -0.217 4.217 6 C -0.076 4.076 7 N -0.269 5.269 8 C -0.070 4.070 9 C -0.007 4.007 10 C -0.560 4.560 11 H 0.071 0.929 12 C -0.141 4.141 13 N -0.532 5.532 14 Si 0.718 3.282 15 H -0.202 1.202 16 H -0.212 1.212 17 H -0.203 1.203 18 C 0.020 3.980 19 H 0.072 0.928 20 C -0.075 4.075 21 C -0.133 4.133 22 C -0.145 4.145 23 C -0.140 4.140 24 C -0.141 4.141 25 C -0.101 4.101 26 H 0.081 0.919 27 H 0.081 0.919 28 H 0.092 0.908 29 H 0.111 0.889 30 H 0.121 0.879 31 H 0.122 0.878 32 H 0.058 0.942 33 H 0.037 0.963 34 H 0.097 0.903 35 H 0.042 0.958 36 H 0.034 0.966 37 H 0.071 0.929 38 H 0.134 0.866 39 H 0.135 0.865 40 H 0.135 0.865 41 H 0.139 0.861 42 H 0.151 0.849 Dipole moment (debyes) X Y Z Total from point charges -15.953 1.584 5.870 17.072 hybrid contribution 1.010 -0.630 -2.168 2.474 sum -14.943 0.954 3.701 15.424 Atomic orbital electron populations 1.21651 0.92065 1.02756 1.02626 1.23186 0.98528 1.01486 0.92672 0.88631 1.86678 1.09763 1.77834 1.31773 1.23546 0.92764 1.05438 1.00000 1.22299 1.02386 0.93336 0.89624 1.61353 1.03677 1.54057 1.07803 1.22574 0.99901 0.98022 0.86466 1.19105 0.87385 0.97574 0.96590 1.21114 0.93637 1.44285 0.96939 0.92927 1.24962 0.97010 0.95212 0.96927 1.69948 1.04358 1.45928 1.32999 0.86681 0.77776 0.78849 0.84851 1.20223 1.21249 1.20293 1.20722 0.89163 0.97111 0.91052 0.92774 1.19644 0.95780 0.95995 0.96068 1.20948 0.96626 0.99814 0.95952 1.21000 1.00361 0.96384 0.96766 1.21109 0.96626 0.96522 0.99693 1.21183 0.96597 1.00330 0.95966 1.21149 0.98656 0.94366 0.95966 0.91937 0.91896 0.90783 0.88930 0.87893 0.87842 0.94188 0.96349 0.90272 0.95817 0.96592 0.92929 0.86560 0.86480 0.86520 0.86089 0.84884 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.13 -1.48 8.77 37.16 0.33 -1.15 16 2 C -0.03 -0.40 2.87 -26.61 -0.08 -0.47 16 3 H 0.10 1.36 8.14 -51.93 -0.42 0.94 16 4 S -0.29 -4.04 21.77 -107.50 -2.34 -6.38 16 5 C -0.07 -0.98 6.69 37.29 0.25 -0.73 16 6 C 0.05 0.87 5.29 -3.91 -0.02 0.84 16 7 N -0.54 -9.42 3.82 -228.40 -0.87 -10.30 16 8 C 0.06 1.15 4.21 -3.83 -0.02 1.14 16 9 C 0.03 0.77 4.90 -27.88 -0.14 0.64 16 10 C -0.52 -14.51 9.11 -34.44 -0.31 -14.83 16 11 H 0.05 1.44 7.74 -52.48 -0.41 1.04 16 12 C 0.06 1.71 5.46 -17.82 -0.10 1.61 16 13 N -0.89 -26.40 13.29 55.43 0.74 -25.67 16 14 Si 0.89 21.51 29.54 -169.99 -5.02 16.49 16 15 H -0.28 -6.58 7.11 56.52 0.40 -6.18 16 16 H -0.29 -6.85 7.11 56.52 0.40 -6.45 16 17 H -0.28 -6.60 7.11 56.52 0.40 -6.20 16 18 C 0.13 1.93 1.66 -68.97 -0.11 1.81 16 19 H 0.05 0.84 7.77 -51.93 -0.40 0.44 16 20 C -0.07 -1.06 2.71 -104.62 -0.28 -1.34 16 21 C -0.11 -1.48 8.70 -39.58 -0.34 -1.83 16 22 C -0.13 -1.53 10.05 -39.58 -0.40 -1.92 16 23 C -0.12 -1.50 10.05 -39.58 -0.40 -1.90 16 24 C -0.12 -1.69 10.05 -39.58 -0.40 -2.09 16 25 C -0.08 -1.27 7.11 -39.58 -0.28 -1.55 16 26 H 0.06 0.68 8.14 -51.93 -0.42 0.25 16 27 H 0.06 0.65 8.14 -51.93 -0.42 0.23 16 28 H 0.07 0.80 6.62 -51.93 -0.34 0.46 16 29 H 0.09 1.36 8.14 -51.92 -0.42 0.93 16 30 H 0.10 1.28 8.14 -51.93 -0.42 0.86 16 31 H 0.10 1.89 5.77 -51.93 -0.30 1.59 16 32 H 0.04 0.65 7.91 -51.93 -0.41 0.24 16 33 H 0.02 0.39 8.14 -51.93 -0.42 -0.03 16 34 H 0.08 1.64 4.64 -51.93 -0.24 1.40 16 35 H 0.02 0.64 8.14 -51.93 -0.42 0.22 16 36 H 0.02 0.42 6.18 -51.93 -0.32 0.10 16 37 H 0.26 7.33 8.31 -40.82 -0.34 6.99 16 38 H 0.12 1.32 8.04 -52.49 -0.42 0.90 16 39 H 0.12 1.13 8.06 -52.49 -0.42 0.71 16 40 H 0.12 1.18 8.06 -52.49 -0.42 0.75 16 41 H 0.12 1.49 8.06 -52.49 -0.42 1.07 16 42 H 0.13 2.21 7.60 -52.49 -0.40 1.81 16 LS Contribution 339.10 15.07 5.11 5.11 Total: -1.00 -29.14 339.10 -11.30 -40.44 By element: Atomic # 1 Polarization: 8.67 SS G_CDS: -6.61 Total: 2.06 kcal Atomic # 6 Polarization: -19.46 SS G_CDS: -2.30 Total: -21.76 kcal Atomic # 7 Polarization: -35.83 SS G_CDS: -0.14 Total: -35.96 kcal Atomic # 14 Polarization: 21.51 SS G_CDS: -5.02 Total: 16.49 kcal Atomic # 16 Polarization: -4.04 SS G_CDS: -2.34 Total: -6.38 kcal Total LS contribution 5.11 Total: 5.11 kcal Total: -29.14 -11.30 -40.44 kcal The number of atoms in the molecule is 42 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000118422165.mol2 42 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 67.478 kcal (2) G-P(sol) polarization free energy of solvation -29.141 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 38.336 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -11.300 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -40.441 kcal (6) G-S(sol) free energy of system = (1) + (5) 27.036 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.08 seconds