Wall clock time and date at job start Tue Mar 31 2020 06:35:32 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53000 * 1 3 3 H 1.09004 * 109.62771 * 2 1 4 4 S 1.81898 * 109.62980 * 120.59552 * 2 1 3 5 5 C 1.81896 * 101.91519 * 171.01309 * 4 2 1 6 6 C 1.53254 * 108.50224 * 308.69435 * 5 4 2 7 7 N 1.46509 * 109.79500 * 62.03257 * 6 5 4 8 8 C 1.46897 * 110.95399 * 162.16948 * 7 6 5 9 9 C 1.52998 * 109.47203 * 295.91955 * 8 7 6 10 10 C 1.50701 * 109.47347 * 180.02562 * 9 8 7 11 11 H 1.08005 * 120.00026 * 359.97438 * 10 9 8 12 12 C 1.37877 * 120.00038 * 180.02562 * 10 9 8 13 13 N 1.31511 * 120.00295 * 359.97438 * 12 10 9 14 14 Si 1.86808 * 119.99716 * 179.97438 * 12 10 9 15 15 H 1.48490 * 109.47265 * 59.99652 * 14 12 10 16 16 H 1.48497 * 109.46841 * 179.97438 * 14 12 10 17 17 H 1.48497 * 109.46943 * 299.99321 * 14 12 10 18 18 C 1.46469 * 112.53450 * 287.22722 * 7 6 5 19 19 H 1.09004 * 109.40747 * 312.69683 * 18 7 6 20 20 C 1.50700 * 109.40465 * 192.85727 * 18 7 6 21 21 C 1.38234 * 120.00260 * 139.83909 * 20 18 7 22 22 C 1.38234 * 120.00240 * 179.97438 * 21 20 18 23 23 C 1.38233 * 120.00037 * 0.26327 * 22 21 20 24 24 C 1.38238 * 119.99752 * 359.47832 * 23 22 21 25 25 C 1.38234 * 120.00033 * 0.49775 * 24 23 22 26 26 H 1.08998 * 109.46973 * 180.39039 * 1 2 3 27 27 H 1.09001 * 109.47497 * 300.39525 * 1 2 3 28 28 H 1.09001 * 109.47046 * 60.39150 * 1 2 3 29 29 H 1.09007 * 109.63247 * 68.39487 * 5 4 2 30 30 H 1.08993 * 109.63368 * 188.99387 * 5 4 2 31 31 H 1.08999 * 109.40599 * 182.12100 * 6 5 4 32 32 H 1.09004 * 109.40662 * 301.96186 * 6 5 4 33 33 H 1.09002 * 109.46834 * 55.91472 * 8 7 6 34 34 H 1.08999 * 109.47397 * 175.91460 * 8 7 6 35 35 H 1.09002 * 109.46830 * 299.99519 * 9 8 7 36 36 H 1.08999 * 109.47349 * 59.99475 * 9 8 7 37 37 H 0.96998 * 120.00435 * 180.02562 * 13 12 10 38 38 H 1.07999 * 119.99751 * 359.97438 * 21 20 18 39 39 H 1.08002 * 119.99744 * 179.97438 * 22 21 20 40 40 H 1.07998 * 120.00395 * 179.72811 * 23 22 21 41 41 H 1.07999 * 119.99934 * 180.25938 * 24 23 22 42 42 H 1.08001 * 120.00294 * 179.76453 * 25 24 23 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8962 1.0267 0.0000 4 16 2.1411 -0.8720 1.4747 5 6 3.9230 -0.9908 1.1294 6 6 4.1084 -1.5846 -0.2712 7 7 3.5089 -0.6962 -1.2701 8 6 4.0196 -0.9967 -2.6143 9 6 5.5216 -0.7104 -2.6651 10 6 6.0454 -1.0181 -4.0442 11 1 5.3741 -1.3819 -4.8081 12 6 7.3818 -0.8361 -4.3306 13 7 8.1993 -0.3936 -3.4004 14 14 8.0311 -1.2182 -6.0400 15 1 7.3316 -0.3682 -7.0366 16 1 9.4890 -0.9402 -6.0892 17 1 7.7888 -2.6495 -6.3530 18 6 2.0448 -0.7302 -1.2450 19 1 1.7069 -1.7663 -1.2229 20 6 1.5071 -0.0545 -2.4801 21 6 0.4151 -0.5871 -3.1395 22 6 -0.0785 0.0330 -4.2720 23 6 0.5232 1.1827 -4.7484 24 6 1.6119 1.7184 -4.0859 25 6 2.1052 1.0986 -2.9531 26 1 -0.3633 -1.0276 0.0070 27 1 -0.3634 0.5199 0.8864 28 1 -0.3633 0.5077 -0.8935 29 1 4.3706 0.0024 1.1682 30 1 4.3967 -1.6382 1.8672 31 1 5.1725 -1.6974 -0.4788 32 1 3.6248 -2.5604 -0.3178 33 1 3.8420 -2.0474 -2.8439 34 1 3.5059 -0.3731 -3.3460 35 1 5.6992 0.3403 -2.4355 36 1 6.0353 -1.3340 -1.9334 37 1 9.1394 -0.2653 -3.6019 38 1 -0.0524 -1.4878 -2.7698 39 1 -0.9314 -0.3835 -4.7874 40 1 0.1403 1.6648 -5.6357 41 1 2.0794 2.6190 -4.4556 42 1 2.9581 1.5149 -2.4377 RHF calculation, no. of doubly occupied orbitals= 52 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000118422165.mol2 42 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 06:35:32 Heat of formation + Delta-G solvation = 12.607464 kcal Electronic energy + Delta-G solvation = -21692.723326 eV Core-core repulsion = 18762.866937 eV Total energy + Delta-G solvation = -2929.856389 eV No. of doubly occupied orbitals = 52 Molecular weight (most abundant/longest-lived isotopes) = 291.135 amu Computer time = 3.43 seconds Orbital eigenvalues (eV) -41.12603 -38.69555 -35.75934 -34.72626 -32.92421 -31.70962 -31.55306 -30.15214 -27.39169 -25.66827 -23.97198 -23.89728 -23.00651 -21.74641 -20.98392 -18.73456 -18.04148 -17.28794 -16.87362 -16.53173 -16.25566 -15.89880 -15.69175 -15.53708 -15.31735 -14.69748 -14.32185 -14.24082 -14.15486 -13.69817 -13.49453 -13.44909 -13.17801 -12.99453 -12.92833 -12.72485 -12.45234 -12.37506 -12.11950 -11.97251 -11.83338 -11.64650 -11.31347 -11.21091 -10.73397 -10.51873 -9.72730 -9.51451 -9.33603 -8.70294 -8.21006 -6.31601 0.43552 0.56249 0.78513 1.38655 1.41071 1.49050 1.49594 2.38170 2.75074 2.92898 3.12582 3.71013 3.76217 3.87033 3.98597 4.10906 4.14893 4.21295 4.23220 4.34776 4.36041 4.46488 4.55506 4.65137 4.68817 4.77206 4.79385 4.82772 4.89289 4.98401 5.07320 5.12294 5.18996 5.22422 5.42291 5.57084 5.65226 5.67977 5.70729 5.76636 6.02750 6.15203 6.22817 6.29373 6.84024 7.37158 8.90578 Molecular weight = 291.14amu Principal moments of inertia in cm(-1) A = 0.013571 B = 0.005817 C = 0.004315 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2062.762834 B = 4812.462087 C = 6487.033634 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.124 4.124 2 C -0.026 4.026 3 H 0.083 0.917 4 S -0.281 6.281 5 C -0.065 4.065 6 C 0.055 3.945 7 N -0.551 5.551 8 C 0.079 3.921 9 C 0.042 3.958 10 C -0.542 4.542 11 H 0.054 0.946 12 C 0.007 3.993 13 N -0.929 5.929 14 Si 0.960 3.040 15 H -0.268 1.268 16 H -0.282 1.282 17 H -0.268 1.268 18 C 0.135 3.865 19 H 0.054 0.946 20 C -0.085 4.085 21 C -0.117 4.117 22 C -0.122 4.122 23 C -0.121 4.121 24 C -0.135 4.135 25 C -0.105 4.105 26 H 0.069 0.931 27 H 0.072 0.928 28 H 0.079 0.921 29 H 0.084 0.916 30 H 0.123 0.877 31 H 0.078 0.922 32 H 0.045 0.955 33 H 0.010 0.990 34 H 0.080 0.920 35 H -0.008 1.008 36 H -0.004 1.004 37 H 0.264 0.736 38 H 0.135 0.865 39 H 0.149 0.851 40 H 0.143 0.857 41 H 0.127 0.873 42 H 0.107 0.893 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -17.899 0.854 3.654 18.289 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.183 4.183 2 C -0.155 4.155 3 H 0.102 0.898 4 S -0.053 6.053 5 C -0.214 4.214 6 C -0.074 4.074 7 N -0.275 5.275 8 C -0.048 4.048 9 C 0.004 3.996 10 C -0.580 4.580 11 H 0.073 0.927 12 C -0.192 4.192 13 N -0.569 5.569 14 Si 0.785 3.215 15 H -0.192 1.192 16 H -0.207 1.207 17 H -0.193 1.193 18 C 0.025 3.975 19 H 0.072 0.928 20 C -0.086 4.086 21 C -0.135 4.135 22 C -0.140 4.140 23 C -0.139 4.139 24 C -0.153 4.153 25 C -0.124 4.124 26 H 0.088 0.912 27 H 0.091 0.909 28 H 0.098 0.902 29 H 0.102 0.898 30 H 0.141 0.859 31 H 0.096 0.904 32 H 0.063 0.937 33 H 0.028 0.972 34 H 0.098 0.902 35 H 0.011 0.989 36 H 0.015 0.985 37 H 0.072 0.928 38 H 0.153 0.847 39 H 0.166 0.834 40 H 0.161 0.839 41 H 0.145 0.855 42 H 0.125 0.875 Dipole moment (debyes) X Y Z Total from point charges -18.142 0.981 4.771 18.784 hybrid contribution 1.649 -0.410 -1.801 2.476 sum -16.493 0.571 2.970 16.768 Atomic orbital electron populations 1.21615 0.89830 1.03460 1.03370 1.23204 1.00226 1.00416 0.91650 0.89825 1.86632 1.08855 1.77759 1.32042 1.23473 0.93707 1.05237 0.98947 1.22250 1.00785 0.93708 0.90695 1.61256 1.05727 1.54338 1.06181 1.22132 0.96840 0.97241 0.88586 1.18901 0.90488 0.95019 0.95156 1.21512 0.94202 1.44342 0.97989 0.92748 1.25866 0.97273 0.94836 1.01181 1.70081 1.04711 1.46827 1.35255 0.85576 0.77192 0.79064 0.79698 1.19245 1.20716 1.19305 1.20740 0.87025 0.97357 0.92389 0.92803 1.19636 0.96745 0.96002 0.96257 1.21194 0.95947 1.00325 0.96075 1.21393 1.00723 0.95774 0.96120 1.21447 0.95711 0.96586 1.00157 1.21366 0.97415 1.00778 0.95726 1.21029 0.98763 0.95496 0.97098 0.91183 0.90917 0.90229 0.89767 0.85897 0.90429 0.93712 0.97207 0.90204 0.98915 0.98544 0.92760 0.84735 0.83372 0.83878 0.85479 0.87530 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.12 -2.52 8.77 71.98 0.63 -1.89 16 2 C -0.03 -0.67 2.87 30.68 0.09 -0.58 16 3 H 0.08 2.40 8.14 -2.38 -0.02 2.38 16 4 S -0.28 -7.58 21.77 -56.49 -1.23 -8.81 16 5 C -0.07 -1.86 6.69 72.07 0.48 -1.37 16 6 C 0.05 1.86 5.29 86.46 0.46 2.31 16 7 N -0.55 -19.71 3.82 -876.51 -3.35 -23.07 16 8 C 0.08 3.36 4.21 86.30 0.36 3.72 16 9 C 0.04 2.21 4.90 29.85 0.15 2.35 16 10 C -0.54 -30.95 9.11 25.60 0.23 -30.71 16 11 H 0.05 3.01 7.74 -2.91 -0.02 2.99 16 12 C 0.01 0.39 5.46 84.66 0.46 0.85 16 13 N -0.93 -56.32 13.29 21.45 0.28 -56.04 16 14 Si 0.96 44.26 29.54 68.60 2.03 46.28 16 15 H -0.27 -11.87 7.11 99.48 0.71 -11.16 16 16 H -0.28 -12.67 7.11 99.48 0.71 -11.97 16 17 H -0.27 -11.90 7.11 99.48 0.71 -11.19 16 18 C 0.13 3.96 1.66 44.33 0.07 4.04 16 19 H 0.05 1.61 7.77 -2.39 -0.02 1.59 16 20 C -0.08 -2.40 2.71 -19.86 -0.05 -2.45 16 21 C -0.12 -2.75 8.70 22.27 0.19 -2.55 16 22 C -0.12 -2.54 10.05 22.27 0.22 -2.32 16 23 C -0.12 -2.69 10.05 22.27 0.22 -2.47 16 24 C -0.13 -3.64 10.05 22.27 0.22 -3.41 16 25 C -0.11 -3.27 7.11 22.27 0.16 -3.11 16 26 H 0.07 1.33 8.14 -2.39 -0.02 1.31 16 27 H 0.07 1.35 8.14 -2.39 -0.02 1.33 16 28 H 0.08 1.55 6.62 -2.39 -0.02 1.54 16 29 H 0.08 2.54 8.14 -2.38 -0.02 2.52 16 30 H 0.12 2.99 8.14 -2.39 -0.02 2.97 16 31 H 0.08 3.02 5.77 -2.39 -0.01 3.01 16 32 H 0.04 1.46 7.91 -2.38 -0.02 1.44 16 33 H 0.01 0.43 8.14 -2.39 -0.02 0.41 16 34 H 0.08 3.42 4.64 -2.39 -0.01 3.41 16 35 H -0.01 -0.44 8.14 -2.39 -0.02 -0.46 16 36 H 0.00 -0.20 6.18 -2.39 -0.01 -0.22 16 37 H 0.26 15.06 8.31 -92.71 -0.77 14.29 16 38 H 0.13 2.63 8.04 -2.91 -0.02 2.61 16 39 H 0.15 2.17 8.06 -2.91 -0.02 2.14 16 40 H 0.14 2.39 8.06 -2.91 -0.02 2.36 16 41 H 0.13 3.13 8.06 -2.91 -0.02 3.11 16 42 H 0.11 3.80 7.60 -2.91 -0.02 3.77 16 Total: -1.00 -63.66 339.10 2.62 -61.04 By element: Atomic # 1 Polarization: 17.20 SS G_CDS: 0.98 Total: 18.18 kcal Atomic # 6 Polarization: -41.50 SS G_CDS: 3.91 Total: -37.59 kcal Atomic # 7 Polarization: -76.03 SS G_CDS: -3.07 Total: -79.10 kcal Atomic # 14 Polarization: 44.26 SS G_CDS: 2.03 Total: 46.28 kcal Atomic # 16 Polarization: -7.58 SS G_CDS: -1.23 Total: -8.81 kcal Total: -63.66 2.62 -61.04 kcal The number of atoms in the molecule is 42 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000118422165.mol2 42 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 73.652 kcal (2) G-P(sol) polarization free energy of solvation -63.664 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 9.988 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.620 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -61.045 kcal (6) G-S(sol) free energy of system = (1) + (5) 12.607 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 3.43 seconds